Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec03g0384 ATGCTTTCTAGAGTTGGGAACGTTCTTTGGATGGAAAATCGCGACGATGAAGACTCTGCTTCTTGGACTAAAAACAACAGCGACCACAACCATCTCAACCACCCTGCTAATTGCTCTGTTTTGGACAACAAGGACGAAATCACCTCTCTCTCCACCTTCAAATCCATGCTCGAGGTTGAAGACGACTGGTGCATCTCTGCTAATGCCCTCCATAACCATAATCACCACACCGACATCAATGACATTACCTTCTCTCAGAATTTCACCGACCCACCTGACAATTTGTTGCTCCCTCCTGGAGATTCCTCCTCTTCTTGTTCCCCTTCTTCCTCTGTCTTCAATAACATTGACCCATCTCAATTGCGCTTCTTTTTACCCCAAACTCGCACTTTGTCTTCACTTCATAAGGTAATTTCTAACAACCCTTTAGACCATGGATTCGATTTGGGAGCAGAGGTTGGGTTTCTTGACGTCCAAGCTTCAAATGCTTCGACTCTGCTCAACGATGGAGGTGGGTTATTAACTGGGTTCACTGATTTAAGCCCAACTAGCCAGATGAACACTCCTAATTTGTGCTTAGGCTCTCAATTGACAGCCCCAAATGTGTCCCCAATGCCTGAAAATTGTTCGGGTTTAGCTGGATTCCAGAGTTTCGATGAGAATTTGGGAAATGCTCTGCTTCTGAATCGGTCTAAGCTTTTGAGACCACTAGAATCTTTTCCCACAGTGGGAGCTCAGCCAACTCTGTTTCAGAAGAGGGCAGCTCTAAGGAAGAGTTTAGCTGATAAGGGAAGCAATTTGGGGGTTTTGAGCCCCGATGGCGGCTGGTTTTCAAACAGGATTGAAGGGGGCATTGGAAAAAATGAAGTGGGTGATGAAAATGGGAAGAAGAGGAAAATGATTTATGCAGATGAATTGCAAGATACTAGCATCGACACATCTCGTTTTAATTACGATTCTGATGACTTTACTGAGAATACTAACACTAAATTGGATGACAGTGGTAGAAATGTTGGAAATACATCTAACGCCAATAGTACAATGACCGGCGGCGACCAGAAGGGGAAGAAGAAAGGACTTCCGGCGAAGAATTTGATGGCTGAGAGGCGCCGGAGGAAGAAGCTCAATGATAGGCTCTACATGCTGAGGTCCGTTGTTCCAAAAATCAGCAAAATGGATAGAGCTTCAATTCTTGGGGATGCAATTGAGTACTTGAAGGAACTACTGCAAAGAATCAATGACCTCCATAATGAATTGGAGTTTGCCCCATCTGGGGCAGCCTTGACGCCGGGCGCAAGCTTCCACCCGCTGACTCCAACTCCGCCAAGCCTCTCGAGTCGTATAAAGGAGGAGCTTTGTCCTAGCTCATTTCCCAGCCCAAATGGCCAACCTGCAAGGGTCGAAGTTAGGGTACGAGAAGGACGGGCAGTAAATATACACATGTTTTGTGGTCGTCGACCGGGTCTCTTACTCTCCACAGTTAGGGCATTAGATAATCTTGGATTGGACATCCAACAAGCTGTGATTAGCTGCTTTAATGGTTTTGCCATGGACATTTTTCGAGCAGAGCAATGCAGCGAAGGTCAAGATGTCCATCCCGAGCAGATAAAAGCAATTTTATTGGATTCAGTTGGTTTTAATGGTACGACATAG 1653 45.61 MLSRVGNVLWMENRDDEDSASWTKNNSDHNHLNHPANCSVLDNKDEITSLSTFKSMLEVEDDWCISANALHNHNHHTDINDITFSQNFTDPPDNLLLPPGDSSSSCSPSSSVFNNIDPSQLRFFLPQTRTLSSLHKVISNNPLDHGFDLGAEVGFLDVQASNASTLLNDGGGLLTGFTDLSPTSQMNTPNLCLGSQLTAPNVSPMPENCSGLAGFQSFDENLGNALLLNRSKLLRPLESFPTVGAQPTLFQKRAALRKSLADKGSNLGVLSPDGGWFSNRIEGGIGKNEVGDENGKKRKMIYADELQDTSIDTSRFNYDSDDFTENTNTKLDDSGRNVGNTSNANSTMTGGDQKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDLHNELEFAPSGAALTPGASFHPLTPTPPSLSSRIKEELCPSSFPSPNGQPARVEVRVREGRAVNIHMFCGRRPGLLLSTVRALDNLGLDIQQAVISCFNGFAMDIFRAEQCSEGQDVHPEQIKAILLDSVGFNGTT 550
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4303182 4305986 + CePI673135_03g003840.1 Cec03g0384 198008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec03g0384 550 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 316 545 IPR051358 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Cec03g0384 550 SMART finulus 365 414 IPR011598 GO:0046983(InterPro)
Cec03g0384 550 MobiDBLite consensus disorder prediction 324 352 - -
Cec03g0384 550 FunFam BHLH transcription factor 355 423 - -
Cec03g0384 550 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 362 425 IPR036638 GO:0046983(InterPro)
Cec03g0384 550 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 359 408 IPR011598 GO:0046983(InterPro)
Cec03g0384 550 CDD bHLH_AtAMS_like 362 426 - -
Cec03g0384 550 Pfam Helix-loop-helix DNA-binding domain 366 408 IPR011598 GO:0046983(InterPro)
Cec03g0384 550 Gene3D - 353 422 IPR036638 GO:0046983(InterPro)
Cec03g0384 550 Coils Coil 398 418 - -
Cec03g0384 550 MobiDBLite consensus disorder prediction 324 359 - -
Cec03g0384 550 Pfam Plant bHLH transcription factor, ACT-like domain 467 539 IPR054502 -
Cec03g0384 550 CDD ACT_UUR-ACR-like 479 539 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec03g0384 Cec-Chr3:4303182 Cec05g1432 Cec-Chr5:16729218 1.70E-138 dispersed
Cec03g0384 Cec-Chr3:4303182 Cec11g1540 Cec-Chr11:29671983 3.30E-33 transposed
Cec03g0384 Cec-Chr3:4303182 Cec08g1223 Cec-Chr8:24160848 3.30E-33 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29187 PF00010 HLH 2.10E-09 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec03g0384 - - - 0.0