Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec03g0402 ATGCTTCTTGAATCTTCAAGTTCGAACATGAGCCCTCCCAAATCTTGTCTACGCCCTGTCGGTTGGGTTTGGGTAATGGCTCTGGCAGAGGTGAAAACGCTGTATCTGCAATTTCTTCCGCTTTTCATCCTAATTTGGGTATCCAGAATGGGCGTCTCGGACACTATGTTCAACGACTCCGTAAGTGGGTATTCGGTTGTTTCCAGGAATGAAAATCCAAAAGGACGGTGTCCACATGGTTGGTTTATTAGCCCAAACAAGACCAAGTGCTATGGTTTCATGTCGAGTCCAAAATCATGGAATGATTCAGAGACCCAATGTAATGGTTTTGGTGGGAACTTAGCAGCTCTCATAACATGTCAAGAGTTTAGCTTTGCACAAGATCTATGTAATGGAACTCTTGGTGGCTGTTGGGTTGGTGGCAGAGCGTTCAACTCTTCAAATGATTTTGTTTGGAAATGGTCAGATAATGTATCGAAATGGAATGATTCCATTATTCCCAGAACAACTTTGCAATCTAACTGCAAAAATGTCTCTTGCCGCATGAATGATTCGGTTGAAACGTGTACTTTAATATTTGGGGGACCAGCAACACCGTTCCTTAGGGATGAGAAATGCAGCAGTTCTCACCCTTTTATATGCATGATAAATCTAGATGATAGATGCCATCGCATGCACTGCCACAAGGAGTATCTAGTTATTCTAGCTGTTGTGAGTGGGTTGATATTTTGCACAACGTTAGCTGTGGTGATTTGGCTTCTTGCCCACAAGAGGAGCAAGAAACGGAGAAGGTCCCGGAAGCCATCCAACCCAGCAGCTTCTGCACTGGTACCCCCCTCGTGGAAGGTGTTTACCAAAGAAGAGCTAAGATCAATAACAAAAAACTTCAGTGAGGGAAAATGTCTTCTTGGAGACACAAAAACGGGTGGTACATACATTGGACTTTTGCCTGATGGTTCAAGAGTTGCAATTAAAAGGTTGAAGAAGTCCAGCTTTCAGAGGAAAAAAGAGTTTCATTCCGAAATTGCAAGAGTTGCTAGACTTCGTCACCCAAATTTGGTTGCCCTGAAAGGATGCTGCTATGACCATGGTGACCGCTACATTGTTTATGAATTCATTGTTAATGGGCCCTTAGATAGATGGCTTCACCATGTACCAAGAGGTGGTCGATGCTTAGATTGGAACATGAGAATGAAAATTGCTACAACTCTTGCCCAAGGGATTGCGTTCCTTCATGACAAGGTCAAGCCACATGTGGTACATCGTGATATCCGTGCGAGTAATGTACTTCTTGATGAAGAATTTGGAGCACATCTGATGGGAGTTGGCCTATCGAAATTGGTAGCATATGAAGTGATGCATGAGAGGACAGTGATGGCAGGAGGAACCTATGGATACCTTGCTCCTGAATTTGTCTACAGGAACGAGCTAACCACAAAAAGTGATGTCTATAGTTTTGGGGTGCTACTGCTTGAAATTGTGACCGGTCGAAGACCTGCACAGGCAGTTGATTCGGTTGGTTGGCAGAGCATTTTCGAATGGGCAACGCCTCTCGTGCAGGCTCACCGTTACCTAGATCTCTTGGATCCTCATATAACAGCCACTTCCACTTCTGAAATTCCAGAGGCTGGTGTTGTTCAGAAAGTTGTGGATCTTGTGTATGCTTGCACACAGCATGTTCCATCCATGCGCCCTAGAATGTCGCACGTTGTTCATCAGCTGCAACAATTGGCTCCCTCACCTCTCACACATCTCACTATGAAGTAA 1767 44.54 MLLESSSSNMSPPKSCLRPVGWVWVMALAEVKTLYLQFLPLFILIWVSRMGVSDTMFNDSVSGYSVVSRNENPKGRCPHGWFISPNKTKCYGFMSSPKSWNDSETQCNGFGGNLAALITCQEFSFAQDLCNGTLGGCWVGGRAFNSSNDFVWKWSDNVSKWNDSIIPRTTLQSNCKNVSCRMNDSVETCTLIFGGPATPFLRDEKCSSSHPFICMINLDDRCHRMHCHKEYLVILAVVSGLIFCTTLAVVIWLLAHKRSKKRRRSRKPSNPAASALVPPSWKVFTKEELRSITKNFSEGKCLLGDTKTGGTYIGLLPDGSRVAIKRLKKSSFQRKKEFHSEIARVARLRHPNLVALKGCCYDHGDRYIVYEFIVNGPLDRWLHHVPRGGRCLDWNMRMKIATTLAQGIAFLHDKVKPHVVHRDIRASNVLLDEEFGAHLMGVGLSKLVAYEVMHERTVMAGGTYGYLAPEFVYRNELTTKSDVYSFGVLLLEIVTGRRPAQAVDSVGWQSIFEWATPLVQAHRYLDLLDPHITATSTSEIPEAGVVQKVVDLVYACTQHVPSMRPRMSHVVHQLQQLAPSPLTHLTMK 588
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4411811 4414850 + CePI673135_03g004020.1 Cec03g0402 198026
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec03g0402 588 SMART tyrkin_6 306 574 IPR020635 GO:0004713(InterPro)|GO:0006468(InterPro)
Cec03g0402 588 PANTHER OS01G0750732 PROTEIN 186 577 IPR050885 -
Cec03g0402 588 SMART CLECT_2 77 215 IPR001304 -
Cec03g0402 588 SUPERFAMILY C-type lectin-like 65 218 IPR016187 -
Cec03g0402 588 Pfam Lectin C-type domain 97 215 IPR001304 -
Cec03g0402 588 ProSiteProfiles C-type lectin domain profile. 86 215 IPR001304 -
Cec03g0402 588 ProSiteProfiles Protein kinase domain profile. 297 587 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec03g0402 588 Gene3D Transferase(Phosphotransferase) domain 1 373 583 - -
Cec03g0402 588 Gene3D - 61 218 IPR016186 -
Cec03g0402 588 ProSitePatterns Tyrosine protein kinases specific active-site signature. 419 431 IPR008266 GO:0004672(InterPro)|GO:0006468(InterPro)
Cec03g0402 588 Pfam Protein tyrosine and serine/threonine kinase 318 574 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cec03g0402 588 SUPERFAMILY Protein kinase-like (PK-like) 270 574 IPR011009 -
Cec03g0402 588 CDD CLECT 89 214 - -
Cec03g0402 588 FunFam C-type lectin receptor-like tyrosine-protein kinase 274 372 - -
Cec03g0402 588 FunFam C-type lectin receptor-like tyrosine-protein kinase At1g52310 373 588 - -
Cec03g0402 588 Gene3D Phosphorylase Kinase; domain 1 255 372 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec03g0402 Cec-Chr3:4411811 Cec11g0097 Cec-Chr11:1197317 5.20E-53 dispersed
Cec03g0402 Cec-Chr3:4411811 Cec07g1364 Cec-Chr7:29242073 9.40E-55 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71812 PF07714 PK_Tyr_Ser-Thr 1.30E-39 CL0016 Cec PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec03g0402 - - - 0.0