Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec03g0436 ATGGCCTCAAAATCCTCCCACCTTCTACTAATTCTTCTCTTCATTCTCTCATTCATCAATTCCTCCCTCCAAGATTACTACACTCCCAACAAGAAAAATATGAACATAATCGACTCTTGCTGGCGAAAAACCTCCAATTGGGCCACAAACCGCCAAGCCTTAGCCGATTGCGCCGTTGGCTACGGCAAGGACGCAATCGGAGGCAAATTTGGCACCATTTACGTCGTCACCGACCCTTCCGACAACCCTTCAAACCCGAAATACGGAACGTTACGTTACGGCGTGATCCAAAACAAGCCATTGTGGATTGTGTTTGGTAAGGACATGGTTATTGTGTTGAAGAATGAGCTGATGGTAAATAGTTACAAGACCATTGATGGGCGTGGAGCTACAGTGGAAATTGCTTATGGGCCTTGTATTACGGTTCAAAGGGTTAGCCATGTAATTATACATGGAATTAGTATTCATGATTGTAAGCCTGGCAAAGCTGGGCTTGTTAGAGACAGTGTTTCGCATGTTGGGAAGCGACAAGGGTCTGATGGTGATGCTATTTCTGTGTTTGGTTCTTCCCATGTTTGGATTGATCATTGTTTCTTAGCTCGATGTACTGATGGTCTTGTTGATGTTATTCATGCTTCCACTGCTGTTACTATCTCAAATAACTACTTCTCCCAACATGATAAGGTGATGTTACTTGGACATAATGATGGGTTCACTGAAGATAAAATTATGAGAGTCACCATTGTTTTCAACCGCTTCGGTGCTGGCCTTATCGAGAGGATGCCAAGGGTTAGGTTTGGTTATGCTCATGTAGCGAACAATAGATACGACGAGTGGAAAATGTATGCCATCGGTGGAAGTGCAAACCCCACAATCTTCAGTGAAGGAAACTACTTCGTAGCTCCCCGAAATTCTTATGCCAAGCAGGTTACAAAGAGGGAGGTTAATAATGGGTGGAAGAACTGGAAATGGAGATCCTCCAGAGATGTGTTCTTAAATGGTGCTTATTTTGTGCCATCAGGATGGGGAAGCTGCACACCAATTTACACAAAAGTTCAGTCTTTTCCAGTGGCTCCTGGCTCTATGGTTCCTGCTTTGACTGAAAATGCAGGCCCACTTCCTTGTTTAATCGGCAAACCTTGCTAA 1146 44.07 MASKSSHLLLILLFILSFINSSLQDYYTPNKKNMNIIDSCWRKTSNWATNRQALADCAVGYGKDAIGGKFGTIYVVTDPSDNPSNPKYGTLRYGVIQNKPLWIVFGKDMVIVLKNELMVNSYKTIDGRGATVEIAYGPCITVQRVSHVIIHGISIHDCKPGKAGLVRDSVSHVGKRQGSDGDAISVFGSSHVWIDHCFLARCTDGLVDVIHASTAVTISNNYFSQHDKVMLLGHNDGFTEDKIMRVTIVFNRFGAGLIERMPRVRFGYAHVANNRYDEWKMYAIGGSANPTIFSEGNYFVAPRNSYAKQVTKREVNNGWKNWKWRSSRDVFLNGAYFVPSGWGSCTPIYTKVQSFPVAPGSMVPALTENAGPLPCLIGKPC 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4737919 4739959 + CePI673135_03g004360.1 Cec03g0436 198060
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec03g0436 381 Gene3D - 34 374 IPR012334 -
Cec03g0436 381 SUPERFAMILY Pectin lyase-like 34 372 IPR011050 -
Cec03g0436 381 PRINTS Pollen allergen Amb family signature 116 132 IPR018082 -
Cec03g0436 381 PRINTS Pollen allergen Amb family signature 80 105 IPR018082 -
Cec03g0436 381 PRINTS Pollen allergen Amb family signature 322 346 IPR018082 -
Cec03g0436 381 PRINTS Pollen allergen Amb family signature 282 301 IPR018082 -
Cec03g0436 381 PRINTS Pollen allergen Amb family signature 260 279 IPR018082 -
Cec03g0436 381 PRINTS Pollen allergen Amb family signature 180 201 IPR018082 -
Cec03g0436 381 PRINTS Pollen allergen Amb family signature 352 375 IPR018082 -
Cec03g0436 381 PRINTS Pollen allergen Amb family signature 57 74 IPR018082 -
Cec03g0436 381 SMART amb_all 108 305 IPR002022 -
Cec03g0436 381 PANTHER PECTATE LYASE 18-RELATED 10 376 IPR045032 GO:0030570(InterPro)
Cec03g0436 381 Pfam Pectate lyase 114 299 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g1797 Cec-Chr1:32403441 Cec03g0436 Cec-Chr3:4737919 3.80E-89 dispersed
Cec03g0436 Cec-Chr3:4737919 Cec09g2059 Cec-Chr9:37643072 7.50E-122 dispersed
Cec03g0436 Cec-Chr3:4737919 Cec04g1882 Cec-Chr4:37361596 2.00E-162 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec03g0436 K01728 - csv:101211379 732.25