Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec03g0453 ATGTCTTGTTCAAATCTGACTATGTGGGTGTCTTCAAAACCCACCGTTTCTGATGCATCCTCCCTCTCTTTCCGCTCATTTTTGAGCCCTTTTCAGCTTCCTTCCCAGAATTCGAGCTCAACTTACCCTGGCCGATCATGCTCAGTTTCTCCAATCCACTGTGGTCTTCGGGAGCTTCGAGACCGTATCGATTCGGTGAAGAACACCCAGAAGATCACTGAAGCTATGAAGCTTGTTGCTGCTGCCAAAGTCCGCAGAGCTCAAGAAGCTGTTGTAAATGGAAGACCCTTCTCAGAAGCTTTGGTTGAGGTTCTTTACAACATCAATGAGCAACTTCAAACAGAAGATGTCGATGTTCCTTTAACCAAAGTAAGACCTGTTAAGAAAGTTGCATTAGTTGTTGTCACTGGTGACCGAGGTCTTTGCGGTGGTTTCAACAACAATATCATTAAGAAAGCTGAAGCTAGAATATCGGAATTGAAGGCACTTGGTCTTGATTACACTGTCATTAGTGTTGGTAAGAAGGGTAATTCCTATTTCCTTCGCCGGCCTTACATTCCAGTTGATAAGTTCCTTGAAGGTGGCACTCTTCCCACAGCTAAAGAAGCTCAAGCAATAGCTGATGATGTTTTCTCACTCTTTGTTAGTGAGGAAGTTGATAAAGTAGAGCTTTTGTACACCAAATTTGTGTCTTTGGTAAAATCTGATCCTGTTATTCACACTCTTCTTCCTCTCTCACCCAAGGGTGAGATCTGTGATATAAATGGAGTCTGTGTAGATGCTGCAGAAGATGAGTTTTTCAGGTTGACAACAAAGGAAGGGAAATTGACAGTTGAAAGGGATTCAGTGAGGACAAGCACATCAGATTTCTCCCCAATTTTGGAGTTTGAGCAAGACCCAGTTCAGATCTTGGATGCTTTATTGCCTCTGTATTTGAACAGCCAGATTTTGAGGGCATTGCAAGAGTCACTGGCCAGTGAACTTGCAGCTCGAATGAGTGCTATGAGTAATGCAACTGATAATGCTTCTGAGCTGAAGAGAACTCTGTCTATTGTTTACAATAGACAGCGCCAAGCTAAGATTACTGGAGAAATCTTGGAGATTGTTGCTGGTGCTAATGCCTTGACTTAA 1131 42.97 MSCSNLTMWVSSKPTVSDASSLSFRSFLSPFQLPSQNSSSTYPGRSCSVSPIHCGLRELRDRIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSEALVEVLYNINEQLQTEDVDVPLTKVRPVKKVALVVVTGDRGLCGGFNNNIIKKAEARISELKALGLDYTVISVGKKGNSYFLRRPYIPVDKFLEGGTLPTAKEAQAIADDVFSLFVSEEVDKVELLYTKFVSLVKSDPVIHTLLPLSPKGEICDINGVCVDAAEDEFFRLTTKEGKLTVERDSVRTSTSDFSPILEFEQDPVQILDALLPLYLNSQILRALQESLASELAARMSAMSNATDNASELKRTLSIVYNRQRQAKITGEILEIVAGANALT 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4882297 4883427 - CePI673135_03g004530.1 Cec03g0453 198077
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec03g0453 376 PANTHER ATP SYNTHASE GAMMA CHAIN 1 375 IPR000131 GO:0000275(PANTHER)|GO:0009535(PANTHER)|GO:0015986(InterPro)|GO:0015986(PANTHER)|GO:0045261(InterPro)|GO:0046933(PANTHER)|GO:0046933(InterPro)
Cec03g0453 376 Pfam ATP synthase 56 375 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Cec03g0453 376 FunFam ATP synthase gamma chain, chloroplastic 123 246 - -
Cec03g0453 376 Gene3D ATP synthase, gamma subunit, helix hairpin domain 272 375 - -
Cec03g0453 376 Hamap ATP synthase gamma chain [atpG]. 53 375 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Cec03g0453 376 FunFam ATP synthase gamma chain, chloroplastic 272 375 - -
Cec03g0453 376 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 55 375 IPR035968 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Cec03g0453 376 Gene3D - 123 246 - -
Cec03g0453 376 Gene3D ATP synthase, gamma subunit, helix hairpin domain 55 122 - -
Cec03g0453 376 PRINTS ATP synthase gamma subunit signature 127 146 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Cec03g0453 376 PRINTS ATP synthase gamma subunit signature 322 341 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Cec03g0453 376 PRINTS ATP synthase gamma subunit signature 353 374 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Cec03g0453 376 PRINTS ATP synthase gamma subunit signature 220 237 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Cec03g0453 376 CDD F1-ATPase_gamma 56 372 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Cec03g0453 376 NCBIfam ATP synthase F1 subunit gamma 55 375 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Cec03g0453 376 ProSitePatterns ATP synthase gamma subunit signature. 361 374 IPR023632 -
Cec03g0453 376 FunFam ATP synthase gamma chain, chloroplastic 54 121 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g1726 Cec-Chr1:31847361 Cec03g0453 Cec-Chr3:4882297 1.70E-18 dispersed
Cec10g0515 Cec-Chr10:6215625 Cec03g0453 Cec-Chr3:4882297 7.20E-103 wgd
Cec03g0453 Cec-Chr3:4882297 Cec04g1906 Cec-Chr4:37502334 5.10E-171 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec03g0453 K02115 - csv:101214408 670.618