Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec03g0473 ATGTTTGGAGCACATGGTTTTGAAGATCATCATGAGGATCTACTACTGGAGATGACCCAGAAAAATTTTGAATGTGAACTGGAAAAATTTGGAGAAGATGAGTTCGAGAGTAGATCGGTGACCGACGCCATGGAAGCTCCTTTGGGAGGGGAACTTTGTGTTCTGAATCAGAGAAATAAGAGGAAGCGTTACCATCGCCATACTCAGCTTCAAATACAGGAAATGGAAGCGTTTTTTAAGGAGTGTCCACATCCGGATGACAAGCAAAGAAAGCAGCTGAGCCGTGAGTTAGGACTCGAACCCCTCCAGGTCAAGTTCTGGTTCCAAAACAAGCGCACACAAATCAAGGCTCAACAAGAACGGCATGAGAATGCAATATTGAAAGCTCAAAACGAGAAATTAAGAGCAGAGAACATGAGGTACAAAGAAGCTCTAAGCAATACAAGTTGCCCTAATTGTGGAGGTCCTGCTGCTCTTGGTGAAATGTCCTTTGATGCCCAACATTTGAGAATTGACAATGCACATCTAAGAGACGAGATAGAGAGATTAAACAGTAGTAGCAAATATGGTGGGAAGGCATGGGGTTCTCATTCTCATATGGTTCCATGTGGAGGGCAGCTTGATCATCTTGGGGTTGGAAGATCATCATTAAAGCCCCAACAAGCTGATCATTTGTTAGGGGAAATGTATGGAGGAGTGGGAGAGACAATGTTAAAAAAGTCTGTGACTACTGAAATTGATAAGCCAGTAATTGTTGAGCTTGCTGTTTCAGCCATGGAAGAAGTTTGTAGAATGGCTCAAGCAGGTGAGCCGTTGTGGGTTACTGGTGAAAACTCCATGGAAATGCTGAATGAAGATGAGTACTTGAGGACTTACTCTACACGAATTGGCCCTAGAATTGTGGGGCTTAGCTTTGAAGCTTCAAGGCAAACCTCCATTCTTGCTTTCAATCATTTAAAACTTGTCCATGTTCTCATGGACGTGAACCAATGGTCAACCATATTTTGTGGGATTGTTTCAAGAGCATTGACACTTGAAGTCTTATCAACCGGAGTTGGTGGCGACTATAATGGAGCTCTGCATGTCATGACGGCCGAGTTTCAAGTTCCTTCTCCCCTGGTTCCGACTCGAGAAAATTACTTCGTGAGATACTGCAAGCAACAGGCAGACCGGAGTTGGGCGGTGGTCGATGTTTCGCTTGATTATTTACGCCCCACACCTACTTCAAGGACTCGAAGAAGACCATCCGGTTGCTTAATCCAAGAACTACCAAATGGTTGCTCAAAGGTGACTTGGGTGGAACATGTAGAAGTGGATGATCGAGCAGTACACAATTTGTACAAACGAGTGGTCTCATGTGGGCTTGCCTTTGGCGCAAAACGATGGATGGCTACTCTTGATCGACAGTGCCAACGCTTAACAAACTCCTCCTCTACCAACATTGCTGCACTAGACATTCGCGTGGTAACAGGGCAAGAGGGGAGGAAGAGCGTAATGAAGTTAGCAGAGAGAATGGTGAGGAGCTTCTGTAGTGGCGTTGGGGCTGCTACTGCACACAACTGGACTACATTATCCACCATTGATTCCGACGATGTTCGGGTCATGGCGAGAAAGAGCCTCGACGACCCTGGCCGACCTCCTGGAATTGTTCTCAATGCAGCAACTTCTTTCTGGATTCCAATTCCCCCTAACAGAGTCTTCCATTTCCTCCGAGATCAAAACACCCGCAATCAGTGGGATATACTTTCAAACGGTGGATTAGTCCAAGAAATGGCTCGCATTGGCAACGATCGAAACCCAGGAAACTGTGTCTCATTACTTCGTGTTAACAGTGCAAATTCAAGTCAGAGCAACATGTTAATACTACAAGAGAGCTGCAGCGACGACATCAGCGGTTCCTACATAATCTACGCCCCAGTGGACACCGTCGCCATGAACATGGTCTTGAGCGGCGGAGACCCTGATTACGTGGCTCTCTTGCCATCCGGATTCGCCATTCTCCCTGATGGGCCGCCCATTGGGGCTGATGGGCCTTCAGGAATTCTCGAATTCGGGTCCGGTGGTTCCTTGTTGACCGTTGCTTTTCAGATATTAGTGGATTCAGCTCCAACTGCCAAATTGTCTCTTGGGTCCGTGGCTACGGTTAACAGCCTCATCAAGTGCACGGTGGAGCGGATTAGAGCTGCACTCATGTGTGACCAACCCATGAATTAA 2214 46.75 MFGAHGFEDHHEDLLLEMTQKNFECELEKFGEDEFESRSVTDAMEAPLGGELCVLNQRNKRKRYHRHTQLQIQEMEAFFKECPHPDDKQRKQLSRELGLEPLQVKFWFQNKRTQIKAQQERHENAILKAQNEKLRAENMRYKEALSNTSCPNCGGPAALGEMSFDAQHLRIDNAHLRDEIERLNSSSKYGGKAWGSHSHMVPCGGQLDHLGVGRSSLKPQQADHLLGEMYGGVGETMLKKSVTTEIDKPVIVELAVSAMEEVCRMAQAGEPLWVTGENSMEMLNEDEYLRTYSTRIGPRIVGLSFEASRQTSILAFNHLKLVHVLMDVNQWSTIFCGIVSRALTLEVLSTGVGGDYNGALHVMTAEFQVPSPLVPTRENYFVRYCKQQADRSWAVVDVSLDYLRPTPTSRTRRRPSGCLIQELPNGCSKVTWVEHVEVDDRAVHNLYKRVVSCGLAFGAKRWMATLDRQCQRLTNSSSTNIAALDIRVVTGQEGRKSVMKLAERMVRSFCSGVGAATAHNWTTLSTIDSDDVRVMARKSLDDPGRPPGIVLNAATSFWIPIPPNRVFHFLRDQNTRNQWDILSNGGLVQEMARIGNDRNPGNCVSLLRVNSANSSQSNMLILQESCSDDISGSYIIYAPVDTVAMNMVLSGGDPDYVALLPSGFAILPDGPPIGADGPSGILEFGSGGSLLTVAFQILVDSAPTAKLSLGSVATVNSLIKCTVERIRAALMCDQPMN 737
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5045051 5052789 - CePI673135_03g004730.1 Cec03g0473 198097
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec03g0473 737 Pfam START domain 254 472 IPR002913 GO:0008289(InterPro)
Cec03g0473 737 ProSitePatterns 'Homeobox' domain signature. 93 116 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cec03g0473 737 SUPERFAMILY Bet v1-like 244 473 - -
Cec03g0473 737 CDD START_ArGLABRA2_like 248 471 - -
Cec03g0473 737 Coils Coil 166 186 - -
Cec03g0473 737 FunFam Homeobox-leucine zipper protein HDG1 53 134 - -
Cec03g0473 737 SUPERFAMILY Bet v1-like 499 727 - -
Cec03g0473 737 SUPERFAMILY Homeodomain-like 46 119 IPR009057 -
Cec03g0473 737 Gene3D - 55 135 - -
Cec03g0473 737 FunFam Homeobox-leucine zipper protein GLABRA 2 253 471 - -
Cec03g0473 737 Gene3D - 313 473 IPR023393 -
Cec03g0473 737 ProSiteProfiles START domain profile. 244 475 IPR002913 GO:0008289(InterPro)
Cec03g0473 737 SMART HOX_1 59 122 IPR001356 GO:0003677(InterPro)
Cec03g0473 737 SMART START_1 253 472 IPR002913 GO:0008289(InterPro)
Cec03g0473 737 Coils Coil 112 147 - -
Cec03g0473 737 ProSiteProfiles 'Homeobox' domain profile. 58 118 IPR001356 GO:0003677(InterPro)
Cec03g0473 737 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 57 732 IPR042160 -
Cec03g0473 737 CDD homeodomain 60 119 IPR001356 GO:0003677(InterPro)
Cec03g0473 737 Pfam Homeodomain 61 116 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec03g0473 Cec-Chr3:5045051 Cec06g0005 Cec-Chr6:119486 6.90E-188 dispersed
Cec02g0192 Cec-Chr2:1809795 Cec03g0473 Cec-Chr3:5045051 1.50E-243 wgd
Cec03g0473 Cec-Chr3:5045051 Cec04g1921 Cec-Chr4:37595892 4.10E-257 wgd
Cec03g0473 Cec-Chr3:5045051 Cec05g1633 Cec-Chr5:26105530 2.10E-99 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29191 PF01852 START 3.30E-48 CL0209 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec03g0473 K09338 - csv:101212604 1345.1