Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec03g0500 ATGTCAGCTTATTTGTGGAAAAGCTTCGACGAGGATGAAGATCGACCCGAGAAGCCGCGGCGATGTGGAGTTACAGAGATGAGAGGCCCTCATTATACTCTTTCGAGCCAAAATGTTATTCAGGAAATTTTCGAGTCTGTGGGTCAATTTGTCGATGGGTTAAAGTTCTCCGGGGGTTCTCACAGCCTATTGCCGAGGGATTTTATGAAAGAGGTGACGGAAATGGCTCATCGACATGACATCTATGTCAGTACGGGTGACTGGGCGGAGCATTTACTACGCAAAGGTCCATCCGGTTTCAAAGAGTATGTGGAGGAATGTAAGCTCTTAGGATTTGACACTATTGAGCTCAACGTGGGATCACTTGAAGTTCCTGAAGAAACTCTTCTAAGATACGTGCGTTTGATTAAGAACGGTGGCCTTAGGGCTAAGCCTCAGTTCGCAGTGAAGTTCAACAAGTCCGACATTCCCATCAGTGGCAATCGAGCATTTGGAGCTTATATTGTTCCGAGACCACGATCTTCTGAACTTGTAGAAGATGTTGATCTTTTGATCAGAAGGGCTGAGAGATGCCTAGAAGCTGGGGCAGACATGATTATGATTGATGCAGATGATGTCAGTAAACATGCCGATTCTCTTCGAGCAGATATTATTGCCAAGATCATTGGGCGTCTTGGTCTAGAGAAAACGATGTTTGAAGCATCGAATCCCAGAACATCAGAGTGGTTTATCAATCATTATGGTCCAAAGGTGAATCTTTTTGTGGATCACTCTCAAGTTATGGATCTGGAGTGCCTGCGGGGTCGCAACCTGGGACGTGCGCTCCCCTATGCTCATTTTCTTGTACCTTTGGGCTTAGGCCCACTCATGGGCTTTGATCCTTACCTTAAGCAACGCTCAACACTAGCTTTGGCAAGTGCATGGAGTGAGGCATGTGCGTCTACCACTTCAAGTAAAGTGTTGATTCCAAAAGGAACTTACCAATTAACTCAATCCAATCTTAAAGGCCCTTGCAAAAGTCCTATTGAGGTTCAAATTGAAGGAACATTACAAGCACCGGTCCAACCAAAAGGAGATGGGTTGATCATTTTAGAATATGTTGATCAATTAACGTTATCAGGTAATGGAGTTTTGGATGGCCAAGGAAAAACAGGTTGGGAAAAGAATGATTGCCATCTTAAGAAAATATGCGCCAAACTTCCTATGAATTTGAAGTTTAATTTCATCACTAATTCATTAGTGAAGGACATAACTTCATTGGATAGCAAGAATTTTCATATCAACCTTTTGGGCTGCAAGAATCTTACCTTTGACCACGTGACAATTACTGCACCAGATAATAGTCCCAACACCGACGGAATTCACTTGAGTAGTTCAGAAGCAATTAACATTCTCAATACCAAAATTGCAACCGGAGATGATTGTATATCTGTGGGAGATAGTAACAAACAAATAGCTATTAGTGATGTTACTTGTGGACCGGGACATGGAATTAGCGTTGGAAGTTTGGGTAAATATAGCAAGGAACAAGCTGTGGAAGGAATTACAGTGAAAAAATGCAAATTGATCAATACGTCGAATGGTGTCAGGATCAAAACATGGCCAGATTCTGTCGGCGCATTTCCAGCCACTGACATGCATTTTGAAGATATTGAAATGGTTAACGTTAGCTTTCCTATCATCATAGACCAAGAATATTGCCCATGGAACCAGTGCAATCGAAAGGTTGCATCAAAAATTAAGATCAGCAAAGTTAGTTTCAAGAACATTAAAGGCACCTCAGCAACTCCTGTTGCAGTCAAACTTCTTTGCAGTAAGAGTTTACCATGTGAGGATGTGGAAGTTGCTAATATTGACCTCACTTATAGTGGAAACCAAGGTCCAATTATATCTCAATGTTCGAATGTGAACCCCATTGTTTCTGGAGTCCAAAACCCTTGCATCTGTGCTGAACCTGTGCCGGTCGATTCTCCATCAACTGACTGA 1986 42.45 MSAYLWKSFDEDEDRPEKPRRCGVTEMRGPHYTLSSQNVIQEIFESVGQFVDGLKFSGGSHSLLPRDFMKEVTEMAHRHDIYVSTGDWAEHLLRKGPSGFKEYVEECKLLGFDTIELNVGSLEVPEETLLRYVRLIKNGGLRAKPQFAVKFNKSDIPISGNRAFGAYIVPRPRSSELVEDVDLLIRRAERCLEAGADMIMIDADDVSKHADSLRADIIAKIIGRLGLEKTMFEASNPRTSEWFINHYGPKVNLFVDHSQVMDLECLRGRNLGRALPYAHFLVPLGLGPLMGFDPYLKQRSTLALASAWSEACASTTSSKVLIPKGTYQLTQSNLKGPCKSPIEVQIEGTLQAPVQPKGDGLIILEYVDQLTLSGNGVLDGQGKTGWEKNDCHLKKICAKLPMNLKFNFITNSLVKDITSLDSKNFHINLLGCKNLTFDHVTITAPDNSPNTDGIHLSSSEAINILNTKIATGDDCISVGDSNKQIAISDVTCGPGHGISVGSLGKYSKEQAVEGITVKKCKLINTSNGVRIKTWPDSVGAFPATDMHFEDIEMVNVSFPIIIDQEYCPWNQCNRKVASKIKISKVSFKNIKGTSATPVAVKLLCSKSLPCEDVEVANIDLTYSGNQGPIISQCSNVNPIVSGVQNPCICAEPVPVDSPSTD 661
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5235787 5244685 + CePI673135_03g005000.1 Cec03g0500 198124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec03g0500 661 SUPERFAMILY Pectin lyase-like 300 651 IPR011050 -
Cec03g0500 661 MobiDBLite consensus disorder prediction 1 20 - -
Cec03g0500 661 PANTHER - 3 274 IPR052597 -
Cec03g0500 661 ProSitePatterns Polygalacturonase active site. 489 502 IPR000743 GO:0004650(InterPro)|GO:0005975(InterPro)
Cec03g0500 661 SMART pbh1 459 480 IPR006626 -
Cec03g0500 661 SMART pbh1 512 533 IPR006626 -
Cec03g0500 661 SMART pbh1 432 458 IPR006626 -
Cec03g0500 661 Pfam (2R)-phospho-3-sulfolactate synthase (ComA) 14 270 IPR003830 -
Cec03g0500 661 Gene3D - 296 656 IPR012334 -
Cec03g0500 661 SUPERFAMILY (2r)-phospho-3-sulfolactate synthase ComA 13 267 IPR036112 -
Cec03g0500 661 FunFam Pectin lyase-like superfamily protein 290 647 - -
Cec03g0500 661 Gene3D Aldolase class I 9 273 IPR013785 -
Cec03g0500 661 Pfam Glycosyl hydrolases family 28 312 637 IPR000743 GO:0004650(InterPro)|GO:0005975(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec03g0500 Cec-Chr3:5235787 Cec11g0086 Cec-Chr11:1110989 8.60E-182 dispersed
Cec03g0500 Cec-Chr3:5235787 Cec03g0501 Cec-Chr3:5250167 6.00E-167 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec03g0500 - - - 0.0