Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec03g0517 ATGAATCCTCTTCTTCCTAAAAGGGCCGTCTTCCTCATTTCGTTGTATTTGATAATTTTTGTGGGCAGCCATTTGAGCGTTGGCCTTGAGAATTCGAGTTCTACCATTCAAATCATTAAAGATGGAGATCGGTTGGTATCCAGCAACAAGAATTTCGCTCTTGGATTCTTCAGTTTCGACAATTCCACAACTCGCCGATATGTCGGAATTTGGTACAACAAAATTCCTCAACTAACCCTCGTTTGGGTTGCCAATAGAAACCAACCCCTCAACGACACCTCAGGAACCTTGGCCCTCGACCGTCATGGAAACGTCGTGGTTTTTACCCCAACACAAACTGTATCTCTTTGGTCTACGAACGCTTCCATCCAATCAAATAACGACGTGTCGATTGAGCTTTGGAATACGGGAAATCTCGCCCTGATTGAACGACGAAGCCAAAAGGTTATATGGCAAAGCTTTGATTATCCATCTCATGTCCTTCTTCCCAACATGAAAATGGGAGTGAACCGGCGGACCGGGTTCAGCTGGTTCCTAACTTCATGGAAGGCGCAAGATGATCCGGGAACCGGGAACTTTAGTTGCCGGATTGATCCGACCGGGTATCCGCAACTGATTTTGTACGACGGGGATGCTCCTCGGTGGCGGGGAGGATCGTGGACGGGGCGAAGATGGACCGGAGTACCTGAAATGACAAGGTCATTTATAATCAACACATCATATGTGGACAACAGTGAAGAGATTTCCTTAACAAACGGTGTAACGGTGGACACGGTTTTAATGAGAATGACTCTAGATGAATTCGGTTTGGTGCATCGGTCCACATGGAACGAAGAAGAGAAAAAGTGGATTGAATTTTGGTCAGCTCCAATTGAATGGTGTGACAGTTACAACCGGTGCGGTTTGAACAGCAACTGTGACCCATACAACGCAGATCAGTTCCAGTGCAAGTGCCTACCTGGGTTCGAACCACGGTCGAGCCAAAATTGGTTCTTAAGAGATCCGTCGGGTGGGTGCATCAGGAAGAGGTCGAACGCCACGTGTCGGAGTGGAGAGGGTTTTGTGAAAGTGTCACGTGTGAAGGTGCCAGATACATCGACGGCACGTGTGGATAAGAGTATGAGTTTAGAAGCGTGTGAACGAGGGTGTGTAAATGATTGTAATTGCACGGCTTACACAAGTGCAAATGAGACGACAGGGACCGGGTGCATGATGTGGTATGGAGATTTGGTTGACACGCGGACCTATGCCCACGTGGGTCAAGATCTTTACATAAGGGTTGATGCTATTGAATTAGCTCAATACGCACAAAATTCAATTCGCCATCCAACGAAGAAGGTGATAGCAACTGTTGTTGTGTCTTTTGTTGCATTGGTGCTACTCGTGACCTCGCTAATTTATTTATGGGAAACAACTAGAAAAAGAAGGGACAGATCAACAAGCTTATCTCTTAACTTCGGAGAATTTCCAAATCTGAAGGAATTTGATGAAAGTAGAACAAGTTCAGATTTGCCTGTATTTGACTTGTTGACCATAGCAAAGGCAACAGACAATTTTTCAGTTATTAACAAGCTTGGAGAAGGTGGCTTTGGCGCAGTGTATAAGGGCAAACTTACAAATGGAGAGGAAATTGCTGTTAAAAGGTTGGCTAAGAATTCAGGGCAAGGCGTTGGAGAGTTCAAGAATGAAGTAAATTTAATTGCAAAACTCCAACATAGAAACCTCGTCAGAATTTTAGGCTACTGCGTTAAGAATGAAGAGAAAATGCTTGTATATGAATACTTGCCAAACAAAAGCTTGGACTCTTTCATCTTTGATGAAAGCAAGAGGGTTTTGCTTGATTGGAAAAAACGTTTTGAAATCATATGTGGAATTGCACGAGGGATGTTATATCTTCATCAAGATTCTAGATTGAAAATTATTCATCGAGATTTGAAAGCGAGCAATATACTTCTGGATGCTGATTTGAACCCCAAAATAGCAGATTTTGGCATGGCAAGAATATTTGGCCAAGATCAAATTCAAGCAAACACAAATCGCATTGTGGGAACATACGGCTATATGTCACCAGAGTATGCAATGGAAGGCCTATTTTCAGTGAAATCGGATGTATATAGCTTTGGAGTTTTGATACTAGAGATGATTACGGGCAAAAAGAACACTAACTATGATTCCTCCCACTTGAACTTGGTTGGACATGTCTGGGAGCTCTGGAAATTGGACAATGTAATGGAATTAGTAGACTCAATTTTGGAAGAATCAAGTTGTGGATATGAAATCATGAGATGCCTCCAAATTGGGCTATTGTGCGTCCAGGAGGATCCGACAGATCGTCCGACCATGTCCACTGTCATCTTCATGTTGGGGAATGAAGTTGTGCAGAATTTCGGTGAAGCAGGAGGCCATGGGTTGCTGGAGCTGATTTTGAGCAGAGGTAACTTCTCAAGCCCAGCTTGGTGCTCATGCCCTCTTGCCCTGCTGCCTTGTGTGCGTGGGAAGAGTCCCTCAGCCATGTTGGTGAGAGTTGAGACTTGTGTGCTGCCAGCCTTGTGCCTATGGGAATTTCAGTCAAGCTTTGATAAGCCATTTCCAAGTGTTATGCTTACAAGGAAGGGAATTATGATGAAACATTACAAGGAAGAGAATTATGATTCATGTTTCATGTGTAAAGCATGTTATAATTGA 2685 43.76 MNPLLPKRAVFLISLYLIIFVGSHLSVGLENSSSTIQIIKDGDRLVSSNKNFALGFFSFDNSTTRRYVGIWYNKIPQLTLVWVANRNQPLNDTSGTLALDRHGNVVVFTPTQTVSLWSTNASIQSNNDVSIELWNTGNLALIERRSQKVIWQSFDYPSHVLLPNMKMGVNRRTGFSWFLTSWKAQDDPGTGNFSCRIDPTGYPQLILYDGDAPRWRGGSWTGRRWTGVPEMTRSFIINTSYVDNSEEISLTNGVTVDTVLMRMTLDEFGLVHRSTWNEEEKKWIEFWSAPIEWCDSYNRCGLNSNCDPYNADQFQCKCLPGFEPRSSQNWFLRDPSGGCIRKRSNATCRSGEGFVKVSRVKVPDTSTARVDKSMSLEACERGCVNDCNCTAYTSANETTGTGCMMWYGDLVDTRTYAHVGQDLYIRVDAIELAQYAQNSIRHPTKKVIATVVVSFVALVLLVTSLIYLWETTRKRRDRSTSLSLNFGEFPNLKEFDESRTSSDLPVFDLLTIAKATDNFSVINKLGEGGFGAVYKGKLTNGEEIAVKRLAKNSGQGVGEFKNEVNLIAKLQHRNLVRILGYCVKNEEKMLVYEYLPNKSLDSFIFDESKRVLLDWKKRFEIICGIARGMLYLHQDSRLKIIHRDLKASNILLDADLNPKIADFGMARIFGQDQIQANTNRIVGTYGYMSPEYAMEGLFSVKSDVYSFGVLILEMITGKKNTNYDSSHLNLVGHVWELWKLDNVMELVDSILEESSCGYEIMRCLQIGLLCVQEDPTDRPTMSTVIFMLGNEVVQNFGEAGGHGLLELILSRGNFSSPAWCSCPLALLPCVRGKSPSAMLVRVETCVLPALCLWEFQSSFDKPFPSVMLTRKGIMMKHYKEENYDSCFMCKACYN 894
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5430538 5437587 - CePI673135_03g005170.1 Cec03g0517 198141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec03g0517 894 CDD STKc_IRAK 525 788 - -
Cec03g0517 894 SUPERFAMILY Protein kinase-like (PK-like) 497 788 IPR011009 -
Cec03g0517 894 ProSitePatterns Protein kinases ATP-binding region signature. 525 547 IPR017441 GO:0005524(InterPro)
Cec03g0517 894 SMART ntp_6 349 427 IPR003609 -
Cec03g0517 894 Pfam S-locus glycoprotein domain 215 325 IPR000858 GO:0048544(InterPro)
Cec03g0517 894 SMART serkin_6 519 769 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec03g0517 894 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 595 795 - -
Cec03g0517 894 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 26 154 - -
Cec03g0517 894 Pfam PAN-like domain 348 413 IPR003609 -
Cec03g0517 894 Pfam D-mannose binding lectin 79 183 IPR001480 -
Cec03g0517 894 SUPERFAMILY alpha-D-mannose-specific plant lectins 80 188 IPR036426 -
Cec03g0517 894 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 31 794 - -
Cec03g0517 894 ProSitePatterns Serine/Threonine protein kinases active-site signature. 640 652 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cec03g0517 894 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 488 594 - -
Cec03g0517 894 ProSiteProfiles Bulb-type lectin domain profile. 30 154 IPR001480 -
Cec03g0517 894 ProSiteProfiles Protein kinase domain profile. 519 793 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec03g0517 894 CDD PAN_AP_plant 349 427 - -
Cec03g0517 894 CDD B_lectin 37 157 IPR001480 -
Cec03g0517 894 Gene3D - 30 154 IPR036426 -
Cec03g0517 894 PIRSF SRK 3 797 IPR024171 GO:0004674(InterPro)
Cec03g0517 894 Gene3D Transferase(Phosphotransferase) domain 1 595 797 - -
Cec03g0517 894 Gene3D Laminin 294 342 - -
Cec03g0517 894 ProSiteProfiles EGF-like domain profile. 290 328 IPR000742 -
Cec03g0517 894 Pfam Protein tyrosine and serine/threonine kinase 521 785 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cec03g0517 894 Gene3D Phosphorylase Kinase; domain 1 493 594 - -
Cec03g0517 894 SMART blect_4 36 157 IPR001480 -
Cec03g0517 894 ProSiteProfiles PAN/Apple domain profile. 348 428 IPR003609 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec03g0517 Cec-Chr3:5430538 Cec03g0522 Cec-Chr3:5467923 1.70E-188 dispersed
Cec03g0514 Cec-Chr3:5419790 Cec03g0517 Cec-Chr3:5430538 3.80E-128 proximal
Cec03g0515 Cec-Chr3:5422635 Cec03g0517 Cec-Chr3:5430538 8.80E-35 proximal
Cec03g0516 Cec-Chr3:5423114 Cec03g0517 Cec-Chr3:5430538 2.70E-97 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71820 PF07714 PK_Tyr_Ser-Thr 5.00E-50 CL0016 Cec PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec03g0517 - - - 0.0