Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec03g0537 ATGCCAACGCACGCTTTCTTTAGCAGAGTTTCCAGACTCTTCCACGACCATCCTTCCCTTTCCAGGCTCCTTGTTCTTGTCACCGTTAGTGGGGGGAGCCTTGTAGCATATGCTGATGCTAGCCCAACCAATGGTGTACCCAGTATTGCATCTAAAGCCAATGTGGATGAGAAGAAGAAGAAGGTGGTAGTGCTTGGAACTGGTTGGGCGGGAACAAGTTTCTTGAAGAATATTAAAGATCCCTCCTATGAGGTTCAAGTGATATCACCTCGTAATTATTTTGCGTTCACCCCATTGTTGCCAAGTGTTACATGTGGTACAGTGGAAGCCCGTAGCATTGTTGAACCGATTCGCAACATCGTGAGGAAGAAAAGGGTAGACATTAGATTCAATGAAGCAGAGTGCTACAAGATTGATGCTGAAAATAGAAAACTCTATTGCCGATCTAACGAAAACAACAATCTGAATGGGAAAAAGGAATTTGTTGTGGACTATGACTACCTAGTGATAGCTGTGGGAGCTCAAGTTAACACATTCAATACCCCTGGCGTTGTGAAGAATTGCCATTTCTTGAAGGAAGTGGAAGATGCTCAGAGAATACGAAGAACTGTAATTGATTGCTTTGAGAGGGCAAGCCTGCCTACCTTGGATGAAGAAGATAGAAAGAAAATTCTTCATTTTGCTGTTGTTGGTGGTGGCCCCACTGGTGTGGAATTTGCGGCAGAACTTCACGATTTTGTTAATGAGGACTTGGTCAAATTATATCCTGGACTGCAAGATTTTGTAAAAATTACTCTTCTTGAGGCAGGAGATCATATCTTGAACATGTTTGACAAAAGAATTACTACTTTTGCTGAAGAAAAATTCCGTAGAGATGGTATTGATGTTAAGACAGGATCAATGGTAATCAAGGTAACTGATAAAGAGATTTCTACCAAGGAAATGAAGAATGGAGAAATATCTTCTATGCCTTATGGAATGACTGTATGGTCAACTGGTATAGGAACCCGTCCGATCATAAAGGACTTTATGACACAGATTGGTCAGGCTAACAGGCGTGCTTTGGCAACCGATGAATGGCTTCGAGTTGAGGGATGTGACAATGTATATGCACTTGGTGACTGTGCTACTATAAATCAGCGAAGAGTTATGGAGGATATTTCAGCAATTTTTAGCAAGGCAGACAAAGACAATTCTGGGACACTTACAGTTAAAGAATTTCAAGAAGTCATTGATGACATATGTGAAAGATATCCCCAGGTGGAGCTATATTTGAAGAATAAGCAGATGCACAGCATTGTTGATCTTTTAAAAGGATCCAAAGAGGATGTGGCGAAGGAGTCTATCGAATTAGACATTGAAGAGTTTAAATCAGCTCTTTCCCAAGTTGATTCTCAAATGAAAAACCTTCCTGCTACAGCACAGGTGGCTGCGCAGCAAGGTGCATATCTTGCCCATTGTTTTAATCGTATGGACGAGTGCGAAAAAGATCCTGAAGGTCCTCTTAGGTTTAGGGGATCAGGGCGCCACCGCTTTCGGCCCTTTAGGTACAAACATCTTGGACAATTTGCACCTTTGGGAGGAGAACAAACGGCTGCACAACTTCCTGGGGATTGGGTGTCCATTGGCCACAGCTCTCAGTGGCTCTGGTACTCTGTCTATGCAAGTAAGCAAGTTAGTTGGCGCACAAGAGCACTGGTGATTACGGATTGGACGAGGCGTTTTATTTTCGGGAGAGATTCGAGCCGCATATGA 1755 42.96 MPTHAFFSRVSRLFHDHPSLSRLLVLVTVSGGSLVAYADASPTNGVPSIASKANVDEKKKKVVVLGTGWAGTSFLKNIKDPSYEVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPIRNIVRKKRVDIRFNEAECYKIDAENRKLYCRSNENNNLNGKKEFVVDYDYLVIAVGAQVNTFNTPGVVKNCHFLKEVEDAQRIRRTVIDCFERASLPTLDEEDRKKILHFAVVGGGPTGVEFAAELHDFVNEDLVKLYPGLQDFVKITLLEAGDHILNMFDKRITTFAEEKFRRDGIDVKTGSMVIKVTDKEISTKEMKNGEISSMPYGMTVWSTGIGTRPIIKDFMTQIGQANRRALATDEWLRVEGCDNVYALGDCATINQRRVMEDISAIFSKADKDNSGTLTVKEFQEVIDDICERYPQVELYLKNKQMHSIVDLLKGSKEDVAKESIELDIEEFKSALSQVDSQMKNLPATAQVAAQQGAYLAHCFNRMDECEKDPEGPLRFRGSGRHRFRPFRYKHLGQFAPLGGEQTAAQLPGDWVSIGHSSQWLWYSVYASKQVSWRTRALVITDWTRRFIFGRDSSRI 584
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5629312 5634383 - CePI673135_03g005370.1 Cec03g0537 198161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec03g0537 584 PANTHER NADH DEHYDROGENASE 54 584 IPR045024 GO:0003954(InterPro)|GO:0006116(InterPro)
Cec03g0537 584 SUPERFAMILY EF-hand 375 470 IPR011992 -
Cec03g0537 584 ProSiteProfiles EF-hand calcium-binding domain profile. 382 417 IPR002048 GO:0005509(InterPro)
Cec03g0537 584 SUPERFAMILY FAD/NAD(P)-binding domain 59 278 IPR036188 -
Cec03g0537 584 SUPERFAMILY FAD/NAD(P)-binding domain 217 379 IPR036188 -
Cec03g0537 584 Pfam NDH2 C-terminal domain 519 580 IPR054585 -
Cec03g0537 584 Gene3D - 50 414 - -
Cec03g0537 584 Gene3D - 426 583 - -
Cec03g0537 584 ProSitePatterns EF-hand calcium-binding domain. 395 407 IPR018247 -
Cec03g0537 584 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 50 411 - -
Cec03g0537 584 SMART efh_1 386 414 IPR002048 GO:0005509(InterPro)
Cec03g0537 584 Pfam Pyridine nucleotide-disulphide oxidoreductase 60 383 IPR023753 GO:0016491(InterPro)
Cec03g0537 584 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 428 583 - -
Cec03g0537 584 PRINTS FAD-dependent pyridine nucleotide reductase signature 226 244 - -
Cec03g0537 584 PRINTS FAD-dependent pyridine nucleotide reductase signature 62 81 - -
Cec03g0537 584 PRINTS FAD-dependent pyridine nucleotide reductase signature 165 183 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g1805 Cec-Chr2:35901316 Cec03g0537 Cec-Chr3:5629312 2.40E-260 dispersed
Cec02g2048 Cec-Chr2:38228228 Cec03g0537 Cec-Chr3:5629312 4.40E-69 dispersed
Cec02g0140 Cec-Chr2:1437035 Cec03g0537 Cec-Chr3:5629312 1.10E-236 wgd
Cec03g0537 Cec-Chr3:5629312 Cec04g1972 Cec-Chr4:37952659 3.30E-68 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec03g0537 K03885 - csv:101204145 1137.09