Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec03g0540 ATGAACGACTTATTCTCGAATTCGTTCAAAAAGTACACGGATCTGAAGCAACAGGCGTATCTGGACAGCATGGAGGCTGGAAATGAGAGTGTAAATTTGGACAGATTCTTTGAAGATGTAGAAAATGTTAAAGATGACATGAAACAGGTTGAGAATTTGTACAAGAAGTTGCAGCAGGCTAATGAGGAGTGCAAGATTGTGCATAATGCCAAGACAATGAAGGAGCTGAGGGGCCGAATGGAGGCTGATGTCGCCCAAGTTCTCAAGCGAGTCAAAATGATCAAAGGAAAGCTCGAAGCTCTCGAGCGTTCCAATGCCGCTCACCGCAGCCTCCCTGGCTGCGGCCCTGGCTCCTCCGCTGACCGGACTCGAACCTCCGTCGTTAGCGGCTTGGGAAAGAAGCTCAAAGATGTTATGGATGATTTTCAAGGCCTTAGAGCTCGAATGAACGCCGAGTACAAAGAGACCGTCGAGCGAAGGTACTTCACAGTAACAGGGCAGAAAGCAAATGAAGAGACAATAGAAAATTTGATATCAAGTGGGGAAAGTGAGAGTTTCCTGCAGAAGGCAATTCAAGAACAGGGGAGGGGTCAGATAATGGACACAATTTCAGAGATTCAAGAACGACATGACGCTGTGAAAGAAATAGAGAAGAATTTGTTAGAGCTGCATCAGATATTCTTGGACATGGCGGCTTTGGTTGAGGCTCAAGGCCACCAACTGAACGACATTGAAAGCCATGTGGCACATGCTAACTCCTTCGTTAGAAGAGGAACAGAGCAACTGCAAGAAGCTAGAGAGTATCAAAAGAGCTCAAGGAAATGGACTTGCTATGCCATAATTTTGGGGGCTGTTCTCATTGTCATTCTTCTCTTCCCAATCTTAACTTCAATTTTACCTCATTTGTTGTAG 912 45.5 MNDLFSNSFKKYTDLKQQAYLDSMEAGNESVNLDRFFEDVENVKDDMKQVENLYKKLQQANEECKIVHNAKTMKELRGRMEADVAQVLKRVKMIKGKLEALERSNAAHRSLPGCGPGSSADRTRTSVVSGLGKKLKDVMDDFQGLRARMNAEYKETVERRYFTVTGQKANEETIENLISSGESESFLQKAIQEQGRGQIMDTISEIQERHDAVKEIEKNLLELHQIFLDMAALVEAQGHQLNDIESHVAHANSFVRRGTEQLQEAREYQKSSRKWTCYAIILGAVLIVILLFPILTSILPHLL 303
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5659439 5660588 + CePI673135_03g005400.1 Cec03g0540 198164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec03g0540 303 Gene3D - 193 298 - -
Cec03g0540 303 CDD SNARE_syntaxin1-like 202 264 - -
Cec03g0540 303 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 30 160 - -
Cec03g0540 303 FunFam Syntaxin 132 196 296 - -
Cec03g0540 303 Coils Coil 33 70 - -
Cec03g0540 303 SMART SynN_4 28 154 IPR006011 GO:0016020(InterPro)
Cec03g0540 303 CDD SynN 33 190 IPR006011 GO:0016020(InterPro)
Cec03g0540 303 Gene3D - 33 160 - -
Cec03g0540 303 Pfam Syntaxin 35 238 IPR006011 GO:0016020(InterPro)
Cec03g0540 303 SUPERFAMILY t-snare proteins 32 258 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Cec03g0540 303 ProSitePatterns Syntaxin / epimorphin family signature. 209 248 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Cec03g0540 303 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 203 265 IPR000727 -
Cec03g0540 303 Coils Coil 84 104 - -
Cec03g0540 303 SMART tSNARE_6 198 265 IPR000727 -
Cec03g0540 303 PANTHER SYNTAXIN 35 287 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0005886(PANTHER)|GO:0006886(PANTHER)|GO:0006887(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Cec03g0540 303 Pfam SNARE domain 240 291 IPR000727 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec03g0540 Cec-Chr3:5659439 Cec04g1193 Cec-Chr4:31507906 2.00E-85 dispersed
Cec03g0540 Cec-Chr3:5659439 Cec10g1837 Cec-Chr10:33175462 1.60E-90 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec03g0540 K08486 - csv:101217140 579.711