Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cec03g0540 | ATGAACGACTTATTCTCGAATTCGTTCAAAAAGTACACGGATCTGAAGCAACAGGCGTATCTGGACAGCATGGAGGCTGGAAATGAGAGTGTAAATTTGGACAGATTCTTTGAAGATGTAGAAAATGTTAAAGATGACATGAAACAGGTTGAGAATTTGTACAAGAAGTTGCAGCAGGCTAATGAGGAGTGCAAGATTGTGCATAATGCCAAGACAATGAAGGAGCTGAGGGGCCGAATGGAGGCTGATGTCGCCCAAGTTCTCAAGCGAGTCAAAATGATCAAAGGAAAGCTCGAAGCTCTCGAGCGTTCCAATGCCGCTCACCGCAGCCTCCCTGGCTGCGGCCCTGGCTCCTCCGCTGACCGGACTCGAACCTCCGTCGTTAGCGGCTTGGGAAAGAAGCTCAAAGATGTTATGGATGATTTTCAAGGCCTTAGAGCTCGAATGAACGCCGAGTACAAAGAGACCGTCGAGCGAAGGTACTTCACAGTAACAGGGCAGAAAGCAAATGAAGAGACAATAGAAAATTTGATATCAAGTGGGGAAAGTGAGAGTTTCCTGCAGAAGGCAATTCAAGAACAGGGGAGGGGTCAGATAATGGACACAATTTCAGAGATTCAAGAACGACATGACGCTGTGAAAGAAATAGAGAAGAATTTGTTAGAGCTGCATCAGATATTCTTGGACATGGCGGCTTTGGTTGAGGCTCAAGGCCACCAACTGAACGACATTGAAAGCCATGTGGCACATGCTAACTCCTTCGTTAGAAGAGGAACAGAGCAACTGCAAGAAGCTAGAGAGTATCAAAAGAGCTCAAGGAAATGGACTTGCTATGCCATAATTTTGGGGGCTGTTCTCATTGTCATTCTTCTCTTCCCAATCTTAACTTCAATTTTACCTCATTTGTTGTAG | 912 | 45.5 | MNDLFSNSFKKYTDLKQQAYLDSMEAGNESVNLDRFFEDVENVKDDMKQVENLYKKLQQANEECKIVHNAKTMKELRGRMEADVAQVLKRVKMIKGKLEALERSNAAHRSLPGCGPGSSADRTRTSVVSGLGKKLKDVMDDFQGLRARMNAEYKETVERRYFTVTGQKANEETIENLISSGESESFLQKAIQEQGRGQIMDTISEIQERHDAVKEIEKNLLELHQIFLDMAALVEAQGHQLNDIESHVAHANSFVRRGTEQLQEAREYQKSSRKWTCYAIILGAVLIVILLFPILTSILPHLL | 303 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 5659439 | 5660588 | + | CePI673135_03g005400.1 | Cec03g0540 | 198164 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cec03g0540 | 303 | Gene3D | - | 193 | 298 | - | - | |
Cec03g0540 | 303 | CDD | SNARE_syntaxin1-like | 202 | 264 | - | - | |
Cec03g0540 | 303 | FunFam | Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group | 30 | 160 | - | - | |
Cec03g0540 | 303 | FunFam | Syntaxin 132 | 196 | 296 | - | - | |
Cec03g0540 | 303 | Coils | Coil | 33 | 70 | - | - | |
Cec03g0540 | 303 | SMART | SynN_4 | 28 | 154 | IPR006011 | GO:0016020(InterPro) | |
Cec03g0540 | 303 | CDD | SynN | 33 | 190 | IPR006011 | GO:0016020(InterPro) | |
Cec03g0540 | 303 | Gene3D | - | 33 | 160 | - | - | |
Cec03g0540 | 303 | Pfam | Syntaxin | 35 | 238 | IPR006011 | GO:0016020(InterPro) | |
Cec03g0540 | 303 | SUPERFAMILY | t-snare proteins | 32 | 258 | IPR010989 | GO:0016020(InterPro)|GO:0016192(InterPro) | |
Cec03g0540 | 303 | ProSitePatterns | Syntaxin / epimorphin family signature. | 209 | 248 | IPR006012 | GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro) | |
Cec03g0540 | 303 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 203 | 265 | IPR000727 | - | |
Cec03g0540 | 303 | Coils | Coil | 84 | 104 | - | - | |
Cec03g0540 | 303 | SMART | tSNARE_6 | 198 | 265 | IPR000727 | - | |
Cec03g0540 | 303 | PANTHER | SYNTAXIN | 35 | 287 | IPR045242 | GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0005886(PANTHER)|GO:0006886(PANTHER)|GO:0006887(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER) | |
Cec03g0540 | 303 | Pfam | SNARE domain | 240 | 291 | IPR000727 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cec03g0540 | Cec-Chr3:5659439 | Cec04g1193 | Cec-Chr4:31507906 | 2.00E-85 | dispersed | |
Cec03g0540 | Cec-Chr3:5659439 | Cec10g1837 | Cec-Chr10:33175462 | 1.60E-90 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cec03g0540 | K08486 | - | csv:101217140 | 579.711 |