Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec03g0609 ATGGCTTCCACTCGCGATGGGCACTACAGAGGCGTTCGAAAGAGGCCATGGGGTCGTTACGCCGCTGAAATACGCGATCCTTGGAAGAAAACCCGTGTCTGGTTAGGCACTTTCGATACTCCGGAAGAAGCCGCCCTTGCTTACGACGGCGCCGCCAGATCTCTCCGCGGCTCCAAAGCCAAAACCAACTTCCCTCCTCCCGTCGCCGGTCTGTCCCTCGACCTCAACGTTTCCGGTCCTTGGCCAAACGTCACCACCGCCGCCGCCGCACCTTCCTCTTCTGCTCGTTTTCTCCTCGGGGATTTCCTCCGCCATGGCGCCCGAAATGACATGTGCAATCTCAATGTGGAAGCCTCTTCGGTACTGGTGGACTCGAGCGCTCCAGTGACCGCCGCTACGGCGTCGTTTATTGGGCACGTGCGACGGGGCCTCCCTTTTGATCTCAACGAGCCTCCACCGGTGTGGCTATGA 471 59.87 MASTRDGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKAKTNFPPPVAGLSLDLNVSGPWPNVTTAAAAPSSSARFLLGDFLRHGARNDMCNLNVEASSVLVDSSAPVTAATASFIGHVRRGLPFDLNEPPPVWL 156
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6469833 6470303 + CePI673135_03g006090.1 Cec03g0609 198233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec03g0609 156 PRINTS Ethylene responsive element binding protein signature 9 20 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec03g0609 156 PRINTS Ethylene responsive element binding protein signature 31 47 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec03g0609 156 ProSiteProfiles AP2/ERF domain profile. 8 65 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec03g0609 156 CDD AP2 8 65 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec03g0609 156 FunFam Ethylene-responsive transcription factor 2 8 66 - -
Cec03g0609 156 SUPERFAMILY DNA-binding domain 8 66 IPR016177 GO:0003677(InterPro)
Cec03g0609 156 SMART rav1_2 8 71 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec03g0609 156 Pfam AP2 domain 8 57 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec03g0609 156 Gene3D AP2/ERF domain 8 66 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec03g0609 156 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 8 95 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec03g0609 Cec-Chr3:6469833 Cec09g2188 Cec-Chr9:38802575 5.80E-28 dispersed
Cec03g0609 Cec-Chr3:6469833 Cec03g0611 Cec-Chr3:6488972 6.00E-25 proximal
Cec02g1900 Cec-Chr2:36846166 Cec03g0609 Cec-Chr3:6469833 4.80E-28 wgd
Cec03g0609 Cec-Chr3:6469833 Cec04g2024 Cec-Chr4:38384084 6.00E-25 wgd
Cec03g0609 Cec-Chr3:6469833 Cec07g0295 Cec-Chr7:2893352 2.30E-24 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29202 PF00847 AP2 1.50E-14 CL0081 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec03g0609 - - - 0.0