Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cec03g0609 | ATGGCTTCCACTCGCGATGGGCACTACAGAGGCGTTCGAAAGAGGCCATGGGGTCGTTACGCCGCTGAAATACGCGATCCTTGGAAGAAAACCCGTGTCTGGTTAGGCACTTTCGATACTCCGGAAGAAGCCGCCCTTGCTTACGACGGCGCCGCCAGATCTCTCCGCGGCTCCAAAGCCAAAACCAACTTCCCTCCTCCCGTCGCCGGTCTGTCCCTCGACCTCAACGTTTCCGGTCCTTGGCCAAACGTCACCACCGCCGCCGCCGCACCTTCCTCTTCTGCTCGTTTTCTCCTCGGGGATTTCCTCCGCCATGGCGCCCGAAATGACATGTGCAATCTCAATGTGGAAGCCTCTTCGGTACTGGTGGACTCGAGCGCTCCAGTGACCGCCGCTACGGCGTCGTTTATTGGGCACGTGCGACGGGGCCTCCCTTTTGATCTCAACGAGCCTCCACCGGTGTGGCTATGA | 471 | 59.87 | MASTRDGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKAKTNFPPPVAGLSLDLNVSGPWPNVTTAAAAPSSSARFLLGDFLRHGARNDMCNLNVEASSVLVDSSAPVTAATASFIGHVRRGLPFDLNEPPPVWL | 156 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 6469833 | 6470303 | + | CePI673135_03g006090.1 | Cec03g0609 | 198233 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cec03g0609 | 156 | PRINTS | Ethylene responsive element binding protein signature | 9 | 20 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec03g0609 | 156 | PRINTS | Ethylene responsive element binding protein signature | 31 | 47 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec03g0609 | 156 | ProSiteProfiles | AP2/ERF domain profile. | 8 | 65 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec03g0609 | 156 | CDD | AP2 | 8 | 65 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec03g0609 | 156 | FunFam | Ethylene-responsive transcription factor 2 | 8 | 66 | - | - | |
Cec03g0609 | 156 | SUPERFAMILY | DNA-binding domain | 8 | 66 | IPR016177 | GO:0003677(InterPro) | |
Cec03g0609 | 156 | SMART | rav1_2 | 8 | 71 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec03g0609 | 156 | Pfam | AP2 domain | 8 | 57 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec03g0609 | 156 | Gene3D | AP2/ERF domain | 8 | 66 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec03g0609 | 156 | PANTHER | AP2 DOMAIN CLASS TRANSCRIPTION FACTOR | 8 | 95 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cec03g0609 | Cec-Chr3:6469833 | Cec09g2188 | Cec-Chr9:38802575 | 5.80E-28 | dispersed | |
Cec03g0609 | Cec-Chr3:6469833 | Cec03g0611 | Cec-Chr3:6488972 | 6.00E-25 | proximal | |
Cec02g1900 | Cec-Chr2:36846166 | Cec03g0609 | Cec-Chr3:6469833 | 4.80E-28 | wgd | |
Cec03g0609 | Cec-Chr3:6469833 | Cec04g2024 | Cec-Chr4:38384084 | 6.00E-25 | wgd | |
Cec03g0609 | Cec-Chr3:6469833 | Cec07g0295 | Cec-Chr7:2893352 | 2.30E-24 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
29202 | PF00847 | AP2 | 1.50E-14 | CL0081 | Cec | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cec03g0609 | - | - | - | 0.0 |