Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec03g0616 ATGCTTCTCCACCCATTCTTACTCTTCTTCTTCTTCTTCTTCTTCATCTTCCTCTCAAACCCTTCTCTTCTCTCCTTCTCTCTAACCCAAGAAGGCCTCTATCTCCACTCCATCAAGCTCTCTCTCGACGACCCAGATTCCTCTCTCCGCTCATGGAACGACCGCGACGACACTCCTTGTTCCTGGTTCGGCGTTTCTTGCGACCCTCAAACCAACTCCGTTCACTCTCTCGACCTCTCTAACACCAACATCGCCGGCCCATTTCCTTCCCTCCTTTGCCGTCTCCAGAATCTCTCATTCCTCTCCCTTTACAACAATTCCATCAACATGTCCCTTCCCTCTGTTATTTCCGACTGTACCAGTCTCCTCCATCTCGACCTCTCTCAGAATCTCCTCACCGGCGCGCTTCCTAGCTCGATTGCCGATCTCCCCAACCTTCAGTACTTGGATTTGACAGGGAATAACTTCTCCGGCGACATTCCGGAGAGTTTCGCTCGGTTTCGGAACTTGGAAGTTCTGTCGCTTGTTTATAATCTTCTCGATGGGCCGATGCCGGCGTTTCTCGGCAACATTACGTCATTGAAGATGTTGAACCTGTCTTATAACCCGTTTGTGCCGAGCCGGATCCCGCCGGAGTTCGGGAATTTGACGAATCTTGAGGTGCTCTGGTTGACTCAGTGTAATTTGGTTGGGGAAATTCCGCAGTCTCTTGGTCGGTTGAAGCGGCTTACCGATTTGGACTTGGCGTTGAATAATCTTGAAGGACCGATTCCGAAGTCGCTCACGGAGTTGAGTAGTGTGGTTCAGATTGAGTTGTATAATAACTCGTTAACTGGTGAGTTGCCTTCTGGGTTTTCGAATCTGACTTCATTGCGACTGTTTGACGCTTCGATGAATGGTTTGACTGGCGCGATTCCGGATGAGTTGTGTCAATTGCCGCTTGAGAGTCTCAATCTCTACGAGAACAAGTTTGAAGGGAAATTACCGGAAAGCATTGCCAACTCGCGGGGTTTGTACGAACTCAGACTGTTCAGTAACCAGCTCACTGGCGAGTTACCGCGAAATCTTGGAAAGAACTCGCCGTTGAGATGGATGGATGTTTCCAACAACCAGTTTACGGGTGAAATCCCGGGGAATTTGTGTGAGAAGGGAGAGTTGGAGGAACTTCTGATGATCAACAACCAGTTTTCCGGCGAGATTCCGGCGAGTTTAGGTTCGTGCCAGAGTCTTACGAGGGTACGATTGGGTTATAATCTATTATCCGGCGAGGTACCGGCGGGATTTTGGGGCCTCCCACATGTGTATCTATTGGAGCTGGTGAGTAACTCGTTTTCTGGGAAGATTTCGGATGCCATTGCCACTGCTAAGAACCTTTCGATTTTCATTATCTCTAAGAACAACTTCACCGGCACACTACCGACGGAGATGGGACGGCTGGAAAATCTTGTGAAGTTGCTAGCGACGGATAACAAACTAACTGGGTCACTACCAGGGAGTCTTGTGAATCTTAGGCATCTTTCGAGTTTAGATCTTCGGAATAATGAACTCTCTGGGGAACTTCCCAGTGGAATCAAATCGTGGAAGAATCTCAACGAACTCAATTTAGCAAACAATGAATTCACCGGTGAAATCCCCGAAGAAATCGGAAACTTGCCTGTTCTAAATTACCTTGATCTGTCTGGAAATCTGTTTTCTGGAGATGTCCCTCTTGGGTTACAGAATTTGAAACTCAATCTACTCAATTTATCTAACAATCACTTGTCAGGTGAGCTTCCTCCATTTTTAGCTAAGGAAATCTACAGAAACAGCTTTTTGGGGAATCCAGATTTGTGTGGACATTTCGAAAGTTTGTGCAACAGCAAAGGTGAAGCTAAAAGCCAAGGCTCTCTTTGGTTGCTGCGTTCAATCTTCGTCCTTGCCGGTATCGTGTTTATCGTTGGTGTCATCTGGTTTTACCTCAAGTACAGGAAGTTTAAGATGGCAAAGAAAGAAATGGAGAAGAGCAAATGGACATTAATGTCCTTCCACAAGTTGGATTTCAGTGAATATGAGATCTTGGAATCCCTTGATGAAGATAACATCATAGGCAGTGGATCTTCTGGTAAAGTTTACAAAGTTGTGCTCAACAATGGTGAGGCTGTTGCAGTGAAGAAACTGTTTGGAGGGATGAGGAAAGACAGCGAAAAAGGCGATATCGAGAAGGGTCAAGTTCAAGACAATGCCTTCGAAGCCGAAATCGACACTCTGGGAAAGATTAGGCACAAAAACATTGTGAAGCTATGGTGCTGCTGTGTTACAAGAGACTACAAGCTTTTAGTCTATGAATATATGCCTAATGGAAGCTTGGGAGATTTGCTTCATAGTAGTAAAAAAGGACTGCTTGATTGGCCTACTAGGTTTAAGATAGCTTTAGATGCTGCAGAAGGACTTTCTTATCTTCACCACGATTGTGTCCCTCCAATCGTTCATCGTGACGTTAAGTCAAACAACATCTTGTTGGATGGCGATTTTGGAGCACGGTTAGCAGATTTCGGTGTAGCTAAAGTCATTGATTCAACCGGGAAAGGGCCTAAATCCATGTCGGTAATTGCAGGATCTTGCGGTTACATTGCGCCTGAGTATGCTTACACACTCCGAGTGAATGAAAAAAGTGATATATACAGTTTCGGCGTGGTGATTCTCGAGCTAATAACTGGGAGGCTCCCGGTCGATCCGGAGTTCGGAGAGAAGGACCTAGTGAAATGGGTGTGTTTCACATTGGATCAAGACGGGATCGATCAAGTGATCGACCGGAAACTGGATAGCTGTTTCAAGGAGGAAATATGCAGAGTCCTTAACATTGGGTTGCTTTGCACTAGCCCACTTCCCATCAACCGGCCATCAATGAGAAAAGTGGTGAAAATGCTGCAAGAAGTTGGGGCAGAGAACCAATTGAAAAGCAACAACAAAGATGGAAAGTTAACTCCTTATTATTATGAAGATGCATCAGATCAGGGAAGTGTAGCTTAG 3009 45.9 MLLHPFLLFFFFFFFIFLSNPSLLSFSLTQEGLYLHSIKLSLDDPDSSLRSWNDRDDTPCSWFGVSCDPQTNSVHSLDLSNTNIAGPFPSLLCRLQNLSFLSLYNNSINMSLPSVISDCTSLLHLDLSQNLLTGALPSSIADLPNLQYLDLTGNNFSGDIPESFARFRNLEVLSLVYNLLDGPMPAFLGNITSLKMLNLSYNPFVPSRIPPEFGNLTNLEVLWLTQCNLVGEIPQSLGRLKRLTDLDLALNNLEGPIPKSLTELSSVVQIELYNNSLTGELPSGFSNLTSLRLFDASMNGLTGAIPDELCQLPLESLNLYENKFEGKLPESIANSRGLYELRLFSNQLTGELPRNLGKNSPLRWMDVSNNQFTGEIPGNLCEKGELEELLMINNQFSGEIPASLGSCQSLTRVRLGYNLLSGEVPAGFWGLPHVYLLELVSNSFSGKISDAIATAKNLSIFIISKNNFTGTLPTEMGRLENLVKLLATDNKLTGSLPGSLVNLRHLSSLDLRNNELSGELPSGIKSWKNLNELNLANNEFTGEIPEEIGNLPVLNYLDLSGNLFSGDVPLGLQNLKLNLLNLSNNHLSGELPPFLAKEIYRNSFLGNPDLCGHFESLCNSKGEAKSQGSLWLLRSIFVLAGIVFIVGVIWFYLKYRKFKMAKKEMEKSKWTLMSFHKLDFSEYEILESLDEDNIIGSGSSGKVYKVVLNNGEAVAVKKLFGGMRKDSEKGDIEKGQVQDNAFEAEIDTLGKIRHKNIVKLWCCCVTRDYKLLVYEYMPNGSLGDLLHSSKKGLLDWPTRFKIALDAAEGLSYLHHDCVPPIVHRDVKSNNILLDGDFGARLADFGVAKVIDSTGKGPKSMSVIAGSCGYIAPEYAYTLRVNEKSDIYSFGVVILELITGRLPVDPEFGEKDLVKWVCFTLDQDGIDQVIDRKLDSCFKEEICRVLNIGLLCTSPLPINRPSMRKVVKMLQEVGAENQLKSNNKDGKLTPYYYEDASDQGSVA 1002
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6581015 6584125 + CePI673135_03g006160.1 Cec03g0616 198240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec03g0616 1002 Pfam Leucine rich repeat 144 203 IPR001611 GO:0005515(InterPro)
Cec03g0616 1002 Gene3D Transferase(Phosphotransferase) domain 1 777 996 - -
Cec03g0616 1002 Gene3D Ribonuclease Inhibitor 337 621 IPR032675 -
Cec03g0616 1002 Gene3D Ribonuclease Inhibitor 28 186 IPR032675 -
Cec03g0616 1002 SMART serkin_6 689 955 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec03g0616 1002 Gene3D Ribonuclease Inhibitor 267 336 IPR032675 -
Cec03g0616 1002 Pfam Leucine Rich Repeat 554 575 IPR001611 GO:0005515(InterPro)
Cec03g0616 1002 Pfam Leucine Rich Repeat 386 407 IPR001611 GO:0005515(InterPro)
Cec03g0616 1002 Pfam Leucine Rich Repeat 314 334 IPR001611 GO:0005515(InterPro)
Cec03g0616 1002 Pfam Leucine Rich Repeat 218 240 IPR001611 GO:0005515(InterPro)
Cec03g0616 1002 Pfam Leucine Rich Repeat 362 381 IPR001611 GO:0005515(InterPro)
Cec03g0616 1002 Pfam Leucine Rich Repeat 121 143 IPR001611 GO:0005515(InterPro)
Cec03g0616 1002 Pfam Leucine Rich Repeat 269 288 IPR001611 GO:0005515(InterPro)
Cec03g0616 1002 Pfam Leucine Rich Repeat 529 551 IPR001611 GO:0005515(InterPro)
Cec03g0616 1002 Pfam Leucine Rich Repeat 577 596 IPR001611 GO:0005515(InterPro)
Cec03g0616 1002 Pfam Leucine Rich Repeat 505 526 IPR001611 GO:0005515(InterPro)
Cec03g0616 1002 Gene3D Ribonuclease Inhibitor 187 266 IPR032675 -
Cec03g0616 1002 Gene3D Phosphorylase Kinase; domain 1 653 776 - -
Cec03g0616 1002 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 28 191 - -
Cec03g0616 1002 FunFam Leucine-rich receptor-like protein kinase family protein 209 307 - -
Cec03g0616 1002 ProSitePatterns Protein kinases ATP-binding region signature. 695 718 IPR017441 GO:0005524(InterPro)
Cec03g0616 1002 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 777 986 - -
Cec03g0616 1002 Pfam Leucine rich repeat N-terminal domain 29 68 IPR013210 -
Cec03g0616 1002 Pfam Protein kinase domain 692 909 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec03g0616 1002 FunFam Receptor-like protein kinase HSL1 313 620 - -
Cec03g0616 1002 FunFam Receptor-like protein kinase HSL1 673 776 - -
Cec03g0616 1002 SUPERFAMILY Protein kinase-like (PK-like) 680 969 IPR011009 -
Cec03g0616 1002 SMART LRR_typ_2 216 240 IPR003591 -
Cec03g0616 1002 SMART LRR_typ_2 95 119 IPR003591 -
Cec03g0616 1002 SMART LRR_typ_2 288 312 IPR003591 -
Cec03g0616 1002 SMART LRR_typ_2 143 166 IPR003591 -
Cec03g0616 1002 SMART LRR_typ_2 503 526 IPR003591 -
Cec03g0616 1002 SMART LRR_typ_2 191 215 IPR003591 -
Cec03g0616 1002 ProSiteProfiles Protein kinase domain profile. 689 972 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec03g0616 1002 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 12 972 IPR050647 -
Cec03g0616 1002 SUPERFAMILY L domain-like 36 377 - -
Cec03g0616 1002 ProSitePatterns Serine/Threonine protein kinases active-site signature. 821 833 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cec03g0616 1002 SUPERFAMILY L domain-like 314 570 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g0250 Cec-Chr2:2357656 Cec03g0616 Cec-Chr3:6581015 4.20E-169 dispersed
Cec03g0616 Cec-Chr3:6581015 Cec10g0784 Cec-Chr10:12784637 1.80E-90 dispersed
Cec04g0149 Cec-Chr4:5935032 Cec03g0616 Cec-Chr3:6581015 1.40E-57 dispersed
Cec03g1670 Cec-Chr3:34896277 Cec03g0616 Cec-Chr3:6581015 1.10E-74 transposed
Cec11g1566 Cec-Chr11:29951376 Cec03g0616 Cec-Chr3:6581015 5.30E-23 transposed
Cec03g0616 Cec-Chr3:6581015 Cec04g2035 Cec-Chr4:38457804 4.20E-156 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71832 PF00069 Pkinase 1.50E-43 CL0016 Cec PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec03g0616 - - - 0.0