Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec03g0683 ATGAGTTTTGATAATGAAGAGACAACAGGAGCAGAAAGAAGATCGTCATCAAGAACAGGAAGAGGAAAGATTGAAATAAAAAGAATTGAAAATACAACAAATCGCCAAGTTACTTTCTGTAAACGCAGAAATGGATTGCTTAAAAAAGCTTATGAACTTTCAGTTCTTTGTGATGCTGAGGTTGCTCTTATTGTCTTCTCCACTCGTGGTCGTCTCTATGAATATGCCAACAACAGTGTGAGGGCTACGATTTCGAGGTACAAAAAAGCATGTTCGGATCCCTCCTGCACCGTATCGGTTTCGGAAGCCAATACTCAGTTCTACCAGCAAGAATCCGCCAAATTGCGAGCTCAAATCGGGAATTTGCAAAACCTAAACAGGCATTTGTTGGGAGAATCGATTAGTTCGTTGTCCGTTAAGGATCTGAAAAGCCTGGAGATCAAACTGGAGAAAGGAATTAGCCGAATTCGATCCAGAAAGAATGAGCTTCTGTTTGCGGAGATTGAATACATGCAGAAAAGGGAAATTGAACTGCACAATAACAACCAGCTGATACGAGCAAAGATAGCAGAGACAGAGAGAAGCCAACAAAACACAAGTGGAAATAATGCAATAGCAGGAAGAGGAAGAGGAGAGCAAGGATGTGTGGCTCCAAATTTAGAGGTTAATCATAATAATCAATATGACCCAACAAATTACTTTCCCCATCATAATCATCATATCTCTCTGCAACTTGTGTGA 741 40.35 MSFDNEETTGAERRSSSRTGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNSVRATISRYKKACSDPSCTVSVSEANTQFYQQESAKLRAQIGNLQNLNRHLLGESISSLSVKDLKSLEIKLEKGISRIRSRKNELLFAEIEYMQKREIELHNNNQLIRAKIAETERSQQNTSGNNAIAGRGRGEQGCVAPNLEVNHNNQYDPTNYFPHHNHHISLQLV 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7344192 7351437 + CePI673135_03g006830.1 Cec03g0683 198307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec03g0683 246 SMART madsneu2 19 78 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec03g0683 246 PANTHER SERUM RESPONSE FACTOR HOMOLOG 20 211 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cec03g0683 246 ProSitePatterns MADS-box domain signature. 21 75 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec03g0683 246 PRINTS MADS domain signature 41 56 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec03g0683 246 PRINTS MADS domain signature 21 41 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec03g0683 246 PRINTS MADS domain signature 56 77 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec03g0683 246 SUPERFAMILY SRF-like 20 96 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec03g0683 246 FunFam agamous-like MADS-box protein AGL11 31 114 - -
Cec03g0683 246 Gene3D - 31 103 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec03g0683 246 ProSiteProfiles K-box domain profile. 105 195 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cec03g0683 246 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 28 75 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec03g0683 246 Pfam K-box region 102 189 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cec03g0683 246 ProSiteProfiles MADS-box domain profile. 19 79 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec03g0683 246 MobiDBLite consensus disorder prediction 1 25 - -
Cec03g0683 246 CDD MADS_MEF2_like 20 93 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cec03g0683 246 MobiDBLite consensus disorder prediction 7 25 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec03g0683 Cec-Chr3:7344192 Cec08g0211 Cec-Chr8:3858851 1.60E-72 dispersed
Cec02g1920 Cec-Chr2:37036490 Cec03g0683 Cec-Chr3:7344192 2.20E-68 wgd
Cec03g0683 Cec-Chr3:7344192 Cec04g2114 Cec-Chr4:39048396 1.00E-79 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29211 PF01486 K-box 2.60E-26 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec03g0683 K09264 - csv:101205366 391.734