Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec03g0697 ATGGACAAGAATCGGAGTGGAGAGCGACGAATGGCGGCGTTTTCCTCTTCCGCGGATAGCAATACTAGGGCTCGTCCTAGCACCACCACTAGCACCGACAACAGACTTGCCGCACTTGTCAAATACAATGTCGATGCTGGGCTTTTGAACAAGTTTGAGCTCTCGGATGCATCTGGTGAGTCTTTTAACTATTCCAGATCAGTTCTTGAAGCTCCTGTTTCTGTACCCGAAGAACAAATTACTGCCTATTTGTCTAAGATTCAGAGGGGTGGGTTGGTTCAACCCTTTGGTTGTTTGCTTGCCATTGAAGAATCTAGTTTTAAGATTATTAGTTATAGTGAGAATTGTTTTGAATTATTGGGGCTTAATGATCAATTTGGGTCGGCACAGGGGAAGGGTCTGATTGGGGTTGATATGAGAGCTCTGTTTACGCCTTCCTCCGGTGCTTCTTTGGCGAAAGCGGCTTTGTCCAGGGAGATTTCGCTTTTGAACCCTGTTTGGGTCCATTCTAGGACTACCCAGAAGCCATTTTATGCTATATTGCATAGAATTGATGTGGGGATTATATTTGATTTGGAGCCTGCACGGTCTGTTGATCCTGCATTGTCGCTTGCAGGTGCTGTGCAGTCACAGAAACTTGCGGTTCGAGCGATTGCCAGGTTGCAGGCTCTACCTAGTGGTGATATTGGTATTCTATGTGATACGGTTGTTGAAGATGTTCAAAAGCTTACAGGGTATGATAGAGTGATGGTGTATAAGTTCCACAATGATGAACATGGTGAAGTAGTGTCAGAAATCAGAAGGTCAGACTTAGAGCCATACCTGGGTTTGCATTATCCTGCCATTGATATACCTCAAGCGGCTCGTTTTTTGTTCAAGCAGAACCGCGTCAGGATGATTTGTGATTGCCACGCGAAGCCTGTGCAGGTCGTTCAAAGTGATGAACTAAAGCAGCCTCTTTGTTTGGTGAATTCAACACTAAGAGCACCATATAGCTGTCATTTGCAATACATGGCAAATATGGGTTCCTTAGCTTCATTAGTGATGGCAGTAATCGTGAATAGTGATGACTCACCAACAAAGCTATGGGGCCTGGTAGTGTGCCACCATACTTCTCCTCGATATGTCCCTTTCCCACTTCGTTATGCCTGTGAGTTTCTCATGCAGGCCTTCGGGCTGCAGCTTTATATGGAACTTCAATTGGCATTACAATTAACAGAGAAAAGAATCCTCAAGACACAAACTTTACTTTGTGACATGCTTCTCCGAGGCTCCCCATATGCATTGGTGACTCAGTCTCCTAGTATAATGGATATTGTGAAGTGCGATGGTGCTGCATTGTACTATAACAGGGCATGTTGTTTATTAGGTGTAACTCCAACCAAAGCACAAGTCAAAGATCTTGCTGAGTGGATACTAAATAACCATGGGGATTCTACGGGGCTGAGCACGGATAGTTTGGCTGATGCTGGCTACCCTGAAGCTGCTTCACTAGGTGATGCTGTGTGTGGTATGGCAGCTGCAAGAATCACTTCAAAGGATTTCTTATTCTGGTTCAGGTCCCATGCTGCAAAGGAAATTCAATGGGGAGGAGCCAAGCATCATCCAGATGATAAGGATGATTGTGGACGAATGCACCCGAGATCATCATTTAAAGCATTTCTTGAAGTTGCAAAGAGTAGAAGTTTGTCTTGGGAAGTTCAAGAAATAAATGCCATTCACTCATTGCAGCTCATAATGAGGGAGTCTTTTCTGAATGCTAGGGACAGTAATTTAAAGGCAGAACATTCTGTCCAGTTGAGTGATGCTGAGATCCAGGATATCAATGAACTCAGTTCAGTAGCTTGTGAAATGGTTAGGTTGATTGAAACAGCAACTGTTCCAATTTTGGGGGTTGACTCAACTGGTTTGATCAATGGATGGAATGCTAAAATTTCTGAACTTGTGGGATTACAAACTGGAGAAGCTTTGGGGAAATCTCTGGTTAATGAAATTGTTCATGAAGATTCACGTGGAACTGTGGAAGATTTAGTTTCCCGTGCTCTGCAAGGTAAGGAAGACAAAAATGTGGAGTTAAAACTGAGAAGTTTTGGAACTGGTAAAGAAAAGTCTAACGTGTATATTGTAGTTAATGCTTGCACAAGTAGAGATTACACAAACAAAGTTGTTGGAGTTTGTTTTGTTGGGCAAGATCTTACATCCGAGAAAGGTGTGATGGATAAATTTATCCGTCTACAGGGAGATTATAAGACTATTGTTGAAAGTCTGAGTCCATTGATTCCTCCAATGTTTGTTTCCGACGAGAATGGTTACTGCTACGAATGGACTGCAGCCATGGAAAAACTTACCGGTTGGAGGAAAAATGAAGTTATAGGAAAAATGCTAGCTGGGGAGATCTTTGGGAATTTTTGTAGGTTGAAAGGTTTAGATACCCTCACTAGGTTTATGATTCTATTATATCAAGGTATTAGTGGTGAAGTAACTGAAAAGTTTCCATTAGGATTTTTCAACAAGGATGGGAATTATGTAGATGTGTTGTTAACATCGAACAAGAGAACTGATGCTGAAGGAAATGCCATTGGTTGTATCTGCTTCCTGCAAATTGTTCAGCCCTACTTACATGGGGTCTTAGAAGGACTTGGGACGGGTGATAGGGAGGGCATTCTGCAGCATAAGGAATTGAGCTTCTTAAAGCATGAGATGAAAAATCCTTTAAATGGCCTTAGATTTACTCATGAACTCCTCGTAAATTCTGGCATTACAGAAAACCAGAAACTCTTCCTTGATACTAGTGATGCATGCGAGAGACAAATCATGACAATCATAGAGGATATGGACTTAAGAAGTTTAGAAAGAGGCCAAGTAGAGATAAACAGAGAAGAATTTCTCCTCGGGAGTGTTCTGGATGCCATTATCTGTCAAATCATGATTGTTGTCAGAGAGAGGAACATTCAACTTTTTCATGAAATTCCAGAAGAAATCAAAACTTTAACTCTTTGTGGCGATCAAATTAAGCTTCAGATGGTTTTGTCAGATTTCTTATTCAACGCAGTGCAGTATGCGCCTGTTCTGGATGGTTGGGTTGAAATCAAAATTTCTTCTGGTTTGAAGCTTATACAAGATGGAAATGAACATATTCAATTGCAGATCAGAATGTCACATCCAGGTCAAGGTTTGCCTCCTGAACTAATCCAGGATATGGTTGGAGGAGGACAACAGTTGACTTCAGAGCAAGGCCTGACCCTAAACCTATCACGCAGACTTCTCAATAAACTGAACGGTAACGTCCGTTATGTTAGAGAGCAAACCAAATGCTACTTCCTCATCGATCTCGAACTCATGTTAAGAATTGAGAACCCTTCTCCCAAAGATGCACCGGTTTTCAGCCTGGACAATGCTGAAATCCAGCAGACCCCCATCACGTTCATGTCACCTGACAAATAG 3444 42.25 MDKNRSGERRMAAFSSSADSNTRARPSTTTSTDNRLAALVKYNVDAGLLNKFELSDASGESFNYSRSVLEAPVSVPEEQITAYLSKIQRGGLVQPFGCLLAIEESSFKIISYSENCFELLGLNDQFGSAQGKGLIGVDMRALFTPSSGASLAKAALSREISLLNPVWVHSRTTQKPFYAILHRIDVGIIFDLEPARSVDPALSLAGAVQSQKLAVRAIARLQALPSGDIGILCDTVVEDVQKLTGYDRVMVYKFHNDEHGEVVSEIRRSDLEPYLGLHYPAIDIPQAARFLFKQNRVRMICDCHAKPVQVVQSDELKQPLCLVNSTLRAPYSCHLQYMANMGSLASLVMAVIVNSDDSPTKLWGLVVCHHTSPRYVPFPLRYACEFLMQAFGLQLYMELQLALQLTEKRILKTQTLLCDMLLRGSPYALVTQSPSIMDIVKCDGAALYYNRACCLLGVTPTKAQVKDLAEWILNNHGDSTGLSTDSLADAGYPEAASLGDAVCGMAAARITSKDFLFWFRSHAAKEIQWGGAKHHPDDKDDCGRMHPRSSFKAFLEVAKSRSLSWEVQEINAIHSLQLIMRESFLNARDSNLKAEHSVQLSDAEIQDINELSSVACEMVRLIETATVPILGVDSTGLINGWNAKISELVGLQTGEALGKSLVNEIVHEDSRGTVEDLVSRALQGKEDKNVELKLRSFGTGKEKSNVYIVVNACTSRDYTNKVVGVCFVGQDLTSEKGVMDKFIRLQGDYKTIVESLSPLIPPMFVSDENGYCYEWTAAMEKLTGWRKNEVIGKMLAGEIFGNFCRLKGLDTLTRFMILLYQGISGEVTEKFPLGFFNKDGNYVDVLLTSNKRTDAEGNAIGCICFLQIVQPYLHGVLEGLGTGDREGILQHKELSFLKHEMKNPLNGLRFTHELLVNSGITENQKLFLDTSDACERQIMTIIEDMDLRSLERGQVEINREEFLLGSVLDAIICQIMIVVRERNIQLFHEIPEEIKTLTLCGDQIKLQMVLSDFLFNAVQYAPVLDGWVEIKISSGLKLIQDGNEHIQLQIRMSHPGQGLPPELIQDMVGGGQQLTSEQGLTLNLSRRLLNKLNGNVRYVREQTKCYFLIDLELMLRIENPSPKDAPVFSLDNAEIQQTPITFMSPDK 1147
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7490249 7495675 - CePI673135_03g006970.1 Cec03g0697 198321

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec03g0697 1147 Gene3D - 931 1107 IPR036890 -
Cec03g0697 1147 FunFam Phytochrome 610 742 - -
Cec03g0697 1147 ProSiteProfiles Histidine kinase domain profile. 896 1115 IPR005467 -
Cec03g0697 1147 Pfam GAF domain 232 396 IPR003018 GO:0005515(InterPro)
Cec03g0697 1147 SUPERFAMILY GAF domain-like 407 586 - -
Cec03g0697 1147 SUPERFAMILY PYP-like sensor domain (PAS domain) 87 196 IPR035965 -
Cec03g0697 1147 MobiDBLite consensus disorder prediction 10 31 - -
Cec03g0697 1147 Pfam His Kinase A (phospho-acceptor) domain 893 952 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cec03g0697 1147 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1001 1109 IPR003594 -
Cec03g0697 1147 PANTHER OS08G0260000 PROTEIN 16 993 - -
Cec03g0697 1147 SMART pas_2 747 817 IPR000014 -
Cec03g0697 1147 SMART pas_2 616 683 IPR000014 -
Cec03g0697 1147 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 228 389 IPR016132 -
Cec03g0697 1147 SMART HKATPase_4 1001 1113 IPR003594 -
Cec03g0697 1147 SMART HisKA_10 889 953 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cec03g0697 1147 CDD HisKA 894 949 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cec03g0697 1147 ProSiteProfiles PAC domain profile. 688 744 IPR000700 -
Cec03g0697 1147 Pfam PAS fold 748 867 IPR013767 GO:0006355(InterPro)
Cec03g0697 1147 Pfam PAS fold 617 731 IPR013767 GO:0006355(InterPro)
Cec03g0697 1147 FunFam Phytochrome 404 534 - -
Cec03g0697 1147 Gene3D PAS domain 615 736 - -
Cec03g0697 1147 FunFam Phytochrome 761 869 - -
Cec03g0697 1147 NCBIfam PAS domain S-box protein 621 736 IPR000014 -
Cec03g0697 1147 PIRSF Phytochrome_conventional 14 1121 IPR012129 GO:0006355(InterPro)|GO:0009585(InterPro)|GO:0009881(InterPro)|GO:0017006(InterPro)|GO:0042803(InterPro)
Cec03g0697 1147 MobiDBLite consensus disorder prediction 1 31 - -
Cec03g0697 1147 Gene3D - 404 577 IPR043150 -
Cec03g0697 1147 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 954 1113 IPR036890 -
Cec03g0697 1147 Gene3D - 209 560 IPR029016 -
Cec03g0697 1147 ProSiteProfiles PAS repeat profile. 748 800 IPR000014 -
Cec03g0697 1147 SUPERFAMILY GAF domain-like 208 395 - -
Cec03g0697 1147 Pfam Phytochrome region 412 587 IPR013515 GO:0006355(InterPro)|GO:0009584(InterPro)
Cec03g0697 1147 CDD PAS 625 732 IPR000014 -
Cec03g0697 1147 SMART gaf_1 228 409 IPR003018 GO:0005515(InterPro)
Cec03g0697 1147 Pfam PAS fold 82 195 IPR013654 GO:0006355(InterPro)
Cec03g0697 1147 PRINTS Phytochrome signature 143 165 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cec03g0697 1147 PRINTS Phytochrome signature 547 565 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cec03g0697 1147 PRINTS Phytochrome signature 710 727 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cec03g0697 1147 PRINTS Phytochrome signature 429 449 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cec03g0697 1147 PRINTS Phytochrome signature 514 533 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cec03g0697 1147 PRINTS Phytochrome signature 243 262 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cec03g0697 1147 PRINTS Phytochrome signature 730 750 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cec03g0697 1147 PRINTS Phytochrome signature 328 349 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cec03g0697 1147 PRINTS Phytochrome signature 617 633 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cec03g0697 1147 PRINTS Phytochrome signature 636 651 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cec03g0697 1147 CDD PAS 759 867 IPR000014 -
Cec03g0697 1147 SUPERFAMILY PYP-like sensor domain (PAS domain) 762 866 IPR035965 -
Cec03g0697 1147 Gene3D PAS domain 86 331 - -
Cec03g0697 1147 ProSiteProfiles PAS repeat profile. 614 685 IPR000014 -
Cec03g0697 1147 Gene3D PAS domain 762 871 - -
Cec03g0697 1147 SUPERFAMILY PYP-like sensor domain (PAS domain) 620 728 IPR035965 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec03g0697 K12123 - - csv:101214900 2038.85
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec03g0697 Cec-Chr3:7490249 Cec05g0782 Cec-Chr5:6481878 0.00E+00 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi10g343 . . . . . . Bma14g00963 Bma01g01487 . Cmo18g00427 . . . . . Cpe09g00775 . . . . . . . . . . . . . . . . . . . . . Chy12g00013 . . . . . Bpe02g00962 . . . Sed01g2202 . . Cma13g00567 Cma18g00452 Car13g00449 Car18g00423 . Cpe20g00493 Bhi08g02111 Tan05g2567 Cmetu12g0178 Lac10g1014 Hepe07g1806 . . Cla03g00672 Cam03g0721 Cec03g0697 Cco03g0733 Clacu03g0719 Cmu03g1310 Cre03g1005 Lsi02g00857 Csa01g02269 . Cme12g01234
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec10g0064 . 28 1220 Histidine Kinase Gene Family AT2G17820 65.0 0.0e+00 1450.3
Cec11g0114 . 20 1004 Histidine Kinase Gene Family AT2G01830 71.6 0.0e+00 1344.7
Cec01g0676 . 151 1098 Histidine Kinase Gene Family AT2G01830 71.7 0.0e+00 1300.8
Cec02g0285 . 289 1237 Histidine Kinase Gene Family AT2G01830 53.8 7.4e-276 947.2
Cec06g0223 . 100 1026 Histidine Kinase Gene Family AT2G01830 53.8 2.5e-268 922.2
Cec02g0970 . 304 1252 Histidine Kinase Gene Family AT2G01830 51.8 1.5e-265 912.9
Cec05g1770 . 1 997 Histidine Kinase Gene Family AT5G10720 57.3 1.1e-291 999.6
Cec08g0938 . 126 1245 Histidine Kinase Gene Family AT1G09570 80.2 0.0e+00 1833.2
Cec02g0302 . 18 1112 Histidine Kinase Gene Family AT1G09570 54.8 0.0e+00 1207.6
Cec05g0782 . 34 1120 Histidine Kinase Gene Family AT1G09570 54.3 0.0e+00 1191.4
Cec08g0941 . 47 679 Histidine Kinase Gene Family AT1G09570 74.4 2.8e-281 965.3
Cec05g0782 . 13 1061 Histidine Kinase Gene Family AT2G18790 78.8 0.0e+00 1667.9
Cec03g0697 . 31 1051 Histidine Kinase Gene Family AT2G18790 60.6 0.0e+00 1239.2
Cec08g0938 . 146 1179 Histidine Kinase Gene Family AT2G18790 53.5 0.0e+00 1088.6
Cec02g0302 . 26 1069 Histidine Kinase Gene Family AT2G18790 51.9 1.1e-313 1073.2
Cec08g0941 . 44 678 Histidine Kinase Gene Family AT2G18790 53.5 1.7e-198 690.3
Cec02g0302 . 12 1116 Histidine Kinase Gene Family AT5G35840 61.5 0.0e+00 1365.1
Cec05g0782 . 21 1122 Histidine Kinase Gene Family AT5G35840 53.0 0.0e+00 1153.7
Cec08g0938 . 134 1239 Histidine Kinase Gene Family AT5G35840 51.9 0.0e+00 1116.7
Cec08g0941 . 45 679 Histidine Kinase Gene Family AT5G35840 53.1 9.0e-200 694.5
Cec05g0782 . 30 1122 Histidine Kinase Gene Family AT4G16250 76.6 0.0e+00 1703.7
Cec03g0697 . 32 1113 Histidine Kinase Gene Family AT4G16250 58.7 0.0e+00 1276.9
Cec08g0938 . 133 1240 Histidine Kinase Gene Family AT4G16250 52.8 0.0e+00 1136.3
Cec02g0302 . 26 1115 Histidine Kinase Gene Family AT4G16250 52.3 0.0e+00 1113.2
Cec08g0941 . 44 678 Histidine Kinase Gene Family AT4G16250 52.7 1.1e-192 671.0
Cec03g0697 . 15 1119 Histidine Kinase Gene Family AT4G18130 62.8 0.0e+00 1368.6
Cec05g0782 . 38 1120 Histidine Kinase Gene Family AT4G18130 58.6 0.0e+00 1268.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009148 1 1 1 2 1 1 2 1 1 1 1 1 2 1 1 1 1 0 2 1 1 1 1 1 1 1 1 2 1 1 34