Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec03g0789 ATGAGCAATTTTCCAGCGGATTTCAGGAGGCATGAATCAGCTAAAAGTAGATTAAAAGATTTATTGCTTCAGAAAGATAATCAACTTTGTGCAGATTGTGGTGCCCCAGATCCTAAATGGGCCTCTGCGAATATTGGTGTGTTTATATGCTTAAAATGTAGTGGCGTGCACAGAAGCCTTGGAACACATATATCAAAGGTCTTGTCGATAACATTGGATGAATGGTCTGATGATGAGATTGATGCAATGATAGAGGTTGGAGGAAATGGTTCTGCTAATGCAATATATGAGGCTTTTATCCCTGTTGGATATACAAAGCCTGGACCAAGTGCCAGCCATGAGGAGCGTTCAAAGTTCATTCGGTCTAAGTATGAACTTCAAGAATTTTTAAAACCGAGCTTGAGAATTATATCCAATAACTCAAAGAATTCTGAGGAGCCAAGCTTGTTTCAAGAGATCTCTGATAGCTTTCGAAGCTCAAATTCTTCAAAGAAATCACCACAAGAAGGCATGGTTGAATTTATGGGATTACTGAAAGTGAAGGTGATTAAAGGCACAAACTTAGCCGTGAGAGATGTGAAGTCGAGTGATCCTTTCATTACCTTGACTCTTGGGCAACAGACTGCTAAAACAACGGTGATAAAGAGCGACTTGAATCCAGTTTGGAACGAGGAACTCATGCTTTCGGTTCCTCAGGAATATGGACCCTTGAAGTTGCAAGTGTTTGATCACGACGTAATTTCAGCTAATGACTTGATGGGTGAAGCAGAAATCGACCTTCAGCCGATGATAACATCTGCAATGGCATTTGGAGATGCTGAAATGTTTGAGAATATGCAGATAGGGAAATGGTTGAAGTCAGATGACAATGCCCTCATCGACAACAGTGCTGTCGTCATCGTCGACGGGAAGGTGAAACAAGAGGTGTCACTCAAGCTCCAAAATGTAGAATCAGGTGAAGTGTACTTGGAACTAGAGTGGATGCCTCTTGATCAATAA 999 41.34 MSNFPADFRRHESAKSRLKDLLLQKDNQLCADCGAPDPKWASANIGVFICLKCSGVHRSLGTHISKVLSITLDEWSDDEIDAMIEVGGNGSANAIYEAFIPVGYTKPGPSASHEERSKFIRSKYELQEFLKPSLRIISNNSKNSEEPSLFQEISDSFRSSNSSKKSPQEGMVEFMGLLKVKVIKGTNLAVRDVKSSDPFITLTLGQQTAKTTVIKSDLNPVWNEELMLSVPQEYGPLKLQVFDHDVISANDLMGEAEIDLQPMITSAMAFGDAEMFENMQIGKWLKSDDNALIDNSAVVIVDGKVKQEVSLKLQNVESGEVYLELEWMPLDQ 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8998241 9001237 + CePI673135_03g007890.1 Cec03g0789 198413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec03g0789 332 CDD C2_ArfGAP 176 319 - -
Cec03g0789 332 SMART C2_3c 177 272 IPR000008 -
Cec03g0789 332 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 10 332 IPR044518 GO:0005096(InterPro)|GO:0005543(InterPro)
Cec03g0789 332 FunFam Arf-GAP with dual PH domain-containing protein 1 10 138 - -
Cec03g0789 332 ProSiteProfiles C2 domain profile. 159 275 IPR000008 -
Cec03g0789 332 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 176 327 IPR035892 -
Cec03g0789 332 CDD ArfGap 18 124 - -
Cec03g0789 332 SUPERFAMILY ArfGap/RecO-like zinc finger 15 132 IPR037278 -
Cec03g0789 332 SMART arf_gap_3 15 137 IPR001164 GO:0005096(InterPro)
Cec03g0789 332 Pfam C2 domain 176 263 IPR000008 -
Cec03g0789 332 ProSiteProfiles ARF GTPase-activating proteins domain profile. 15 146 IPR001164 GO:0005096(InterPro)
Cec03g0789 332 Pfam Putative GTPase activating protein for Arf 16 131 IPR001164 GO:0005096(InterPro)
Cec03g0789 332 Gene3D C2 domain 173 332 IPR035892 -
Cec03g0789 332 Gene3D Arf GTPase activating protein 4 135 IPR038508 -
Cec03g0789 332 FunFam ADP-ribosylation factor GTPase-activating protein AGD12 174 332 - -
Cec03g0789 332 PRINTS HIV Rev interacting protein signature 27 46 IPR001164 GO:0005096(InterPro)
Cec03g0789 332 PRINTS HIV Rev interacting protein signature 67 88 IPR001164 GO:0005096(InterPro)
Cec03g0789 332 PRINTS HIV Rev interacting protein signature 46 63 IPR001164 GO:0005096(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec03g0789 Cec-Chr3:8998241 Cec06g1632 Cec-Chr6:29916336 1.60E-35 dispersed
Cec05g2910 Cec-Chr5:39200129 Cec03g0789 Cec-Chr3:8998241 2.30E-89 transposed
Cec03g0789 Cec-Chr3:8998241 Cec04g2223 Cec-Chr4:40002986 4.50E-139 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec03g0789 K12486 - csv:101211569 587.415