Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec03g0797 ATGTCTTTGCTTAGACCTTACGGTAAGGTCGACGAAACCGACCAATTGAGGCTCGATGCTAGCCGGCGGACTCGGAAGAGGATTGCTGTCATTGTCTTGTCCTTTGTTGTTCTTGTTGGTGTTGTTGTTGGTGTTGTGTTTGGTACTAGAAATGCTTCCAACAAAAATGATGACAGTAACAATCAAAATGGTGCTCTTTCAACTTCAATCAAAGCAATTTGTGATGTGACTTTGTATCCTGATACATGTCACAATGCTTTTGGTCCTTTAGCTAACTTGAGCCATCTCGACCCCGGTGAGATATCCAAGCTTTCGGTTCAATTGGCGCTCGATGAATTGTCGCGAGTGGCTAACTACATTTTTGATCATGCCATTACCAATTCAACTGACAATAAGACCATATTGGCTTTGGAAAATTGTCATGAACTTTTGGACTTAGCATTGGATCATTTGAATATCTCATTGTCTTCTAGTGATATTACTTTGCTTAAAGCTGTGGATGATTTGAAAACATGGCTAACTTCAGCAGCTACTTACCAGCAGACTTGTATCGACGGCCTCGCAGAAGTTGATCCGGCTTTGGCGAACCTCATTGCAAATTACTTGAAGAACTCCACTGAATTGACTAGCAATGGTCTTGCCATTCTCTCGTTCTTTTCAAAGCTTACAGATTCTTTAAGTCTACGACGATTGATGAGTTATGATAATCGCCAAAGCAAGGGAGATTGGGTGCGGCCGATACTCCGAAAGCTAGCTCAAACCGATATCAGGAAGCAGGCTAACATCGTCGTAGCCGTAGACGGTTCGGGAAAGTACAAAACAATCTCTGCAGCTCTCAAGGCTGTTCCTGATAAGAGCAAGAAGAGAATTGTGATCTATGTGAAGAAGGGAACTTACAAGGAGAATGTTGAAGTTAAGAAGAACAAATGGAACGTGGTGATGGTTGGTGATGGAATGAATGCAACCACAGTAACTGGCAGCCTTAATTTCATAGATGGGACACCAACATTTTCAACTGCAACATTTGCTGCAAAAGGAAAAGGCTTCATTGCCATAGACATGGGATTCAAGAACACTGCTGGACCGAGCAAACACCAGGCGGTCGCCCTGATGTCGACATCCGACCAATCAATCTTCTACCGTTGCCGTATAGAGGCATACCAAGACAGTCTCTACGCGCACTCCAACCGTCAATTCTACCGTGAATGCAACGTTTACGGCACAGTTGATTTCATCTTCGGAAATTCAGCAGTAGTCCTACAAAACTGCACTATTGCACCCAAGTTGCCTCTTTTAGGCCAAATGAATACAATCACTGCTCAAGGCAGGTTTGATCCTAATCAAAACACTGGCATTTCGGTACAAGGCTGTTCAATCCGACCGTTCGAGAACTTGAAAGCTACCAAAACTTATCTCGGTCGTCCGTGGAAGAACTACTCGACGACGGTCTATATGCAAAATAATTTGGGGAGCTTAATTGACCCAACTGGCTGGCTGCCATGGGTTGGAACATCAGCACCAGACACCATATTCTATGCAGAGTTTCAAAACTATGGCCCTGGTTCTTCCACAGCCAAAAGAGTGAAATGGAAGGGTGTGAAGAACATTAGCATTAAAACTGCCAAAGAGTTCACAGTTTCTTCCTTCATTGATGGTAAAGATTGGATCTCAAAGGCACAAGTTCCCTTCAATGCCAACCTTTGA 1704 43.6 MSLLRPYGKVDETDQLRLDASRRTRKRIAVIVLSFVVLVGVVVGVVFGTRNASNKNDDSNNQNGALSTSIKAICDVTLYPDTCHNAFGPLANLSHLDPGEISKLSVQLALDELSRVANYIFDHAITNSTDNKTILALENCHELLDLALDHLNISLSSSDITLLKAVDDLKTWLTSAATYQQTCIDGLAEVDPALANLIANYLKNSTELTSNGLAILSFFSKLTDSLSLRRLMSYDNRQSKGDWVRPILRKLAQTDIRKQANIVVAVDGSGKYKTISAALKAVPDKSKKRIVIYVKKGTYKENVEVKKNKWNVVMVGDGMNATTVTGSLNFIDGTPTFSTATFAAKGKGFIAIDMGFKNTAGPSKHQAVALMSTSDQSIFYRCRIEAYQDSLYAHSNRQFYRECNVYGTVDFIFGNSAVVLQNCTIAPKLPLLGQMNTITAQGRFDPNQNTGISVQGCSIRPFENLKATKTYLGRPWKNYSTTVYMQNNLGSLIDPTGWLPWVGTSAPDTIFYAEFQNYGPGSSTAKRVKWKGVKNISIKTAKEFTVSSFIDGKDWISKAQVPFNANL 567
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9176741 9178699 + CePI673135_03g007970.1 Cec03g0797 198421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec03g0797 567 ProSitePatterns Pectinesterase signature 2. 405 414 IPR033131 -
Cec03g0797 567 NCBIfam pectinesterase inhibitor domain 63 216 IPR006501 GO:0004857(InterPro)
Cec03g0797 567 SUPERFAMILY Pectin lyase-like 259 564 IPR011050 -
Cec03g0797 567 FunFam Pectinesterase 255 567 - -
Cec03g0797 567 FunFam Pectinesterase 66 220 - -
Cec03g0797 567 PANTHER PECTINESTERASE 27 557 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Cec03g0797 567 Pfam Pectinesterase 261 552 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cec03g0797 567 Pfam Plant invertase/pectin methylesterase inhibitor 69 215 IPR006501 GO:0004857(InterPro)
Cec03g0797 567 Gene3D - 256 567 IPR012334 -
Cec03g0797 567 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 69 220 IPR035513 -
Cec03g0797 567 SMART PMEI_2 65 215 IPR006501 GO:0004857(InterPro)
Cec03g0797 567 ProSitePatterns Pectinesterase signature 1. 286 305 IPR018040 -
Cec03g0797 567 Gene3D Invertase/pectin methylesterase inhibitor family protein 67 219 IPR035513 -
Cec03g0797 567 CDD PMEI-like_3 72 221 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec03g0797 Cec-Chr3:9176741 Cec07g1549 Cec-Chr7:31032126 1.90E-124 dispersed
Cec03g0797 Cec-Chr3:9176741 Cec05g0742 Cec-Chr5:6111351 1.70E-117 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec03g0797 - - - 0.0