Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec03g0856 ATGGCACTTGCAAATTCAGCTCTACAAGAAGTGGATGGCATGGAGAAAAATGGTGGTTATTTGAAGACTTTAGCCATTGGAAAAGGCCATGAAAATCCAAATAGTAACTTCGTGTTTCGAAACACAACAAATTACCAACTCGATCAACAACAACAACAACAGCAGCAGCAGCAGCAACAACAGTCTCTCATCAACTTCAAGTGTGGGATTGACAATACTATTTTGGGTGATAAGATGAATAACAATGAATCTTTGTTGAGCTTTGAAGCACAAGGGATTTGTCAATTAGATCAAACTTACAATTGGGATGATCAGCAACGTTTGATGGAGGATCCTAATTGCTTTCAAACAGCTACCAATCACAATAATTATAGCCCTTCAAAAGATCACCATAATAAAAATGGAGATAATGGGTCTGTTTATGAGTGGCTTTATTCTGAACCAACTACTCATTTTTCTGATGCCATTCAAGAAGCTGAAGCAACTCAAGAGATTATTGCCAATCACAAACGATCCCATACGGGAGAGAGCAGTGGGAGTGTTTGTAAGAAGCAATGTACTGTTGCAGCTAAGAAACAGAAACCCAAATCATCAACAGCCAAGGATCCACAGAGCATTGCAGCCAAGAATCGACGAGAAAGGATTAGCGAGAGGCTGAAGATATTGCAAGAATTGGTTCCCAATGGCTCCAAGGTTGATTTGGTAACCATGTTGGAGAAAGCAATTAGCTATGTCAAATTTCTTCAACTACAAGTGAAGATCCTAGCGACCGATGAATTTTGGCCTGTTGAAGGTGGGAAAGCTCCAGATATTTCACAAGTAAAGGAAGCCATTGATGTCATTCTTTCATCTCAAAGAGAACGAAGCTCAAGTTCAAACAGTGAAAAGTGA 891 39.62 MALANSALQEVDGMEKNGGYLKTLAIGKGHENPNSNFVFRNTTNYQLDQQQQQQQQQQQQQSLINFKCGIDNTILGDKMNNNESLLSFEAQGICQLDQTYNWDDQQRLMEDPNCFQTATNHNNYSPSKDHHNKNGDNGSVYEWLYSEPTTHFSDAIQEAEATQEIIANHKRSHTGESSGSVCKKQCTVAAKKQKPKSSTAKDPQSIAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKFLQLQVKILATDEFWPVEGGKAPDISQVKEAIDVILSSQRERSSSSNSEK 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10525738 10528397 - CePI673135_03g008560.1 Cec03g0856 198480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec03g0856 296 Pfam Helix-loop-helix DNA-binding domain 207 249 IPR011598 GO:0046983(InterPro)
Cec03g0856 296 SMART finulus 205 254 IPR011598 GO:0046983(InterPro)
Cec03g0856 296 MobiDBLite consensus disorder prediction 192 211 - -
Cec03g0856 296 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 197 257 IPR036638 GO:0046983(InterPro)
Cec03g0856 296 Gene3D - 192 256 IPR036638 GO:0046983(InterPro)
Cec03g0856 296 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 199 248 IPR011598 GO:0046983(InterPro)
Cec03g0856 296 FunFam Transcription factor bHLH83 197 256 - -
Cec03g0856 296 CDD bHLH_AtIND_like 200 262 - -
Cec03g0856 296 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 48 261 IPR045843 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec03g0856 Cec-Chr3:10525738 Cec10g1052 Cec-Chr10:23522225 2.10E-18 dispersed
Cec03g0856 Cec-Chr3:10525738 Cec08g1704 Cec-Chr8:28208469 1.20E-18 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29223 PF00010 HLH 9.50E-08 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec03g0856 - - - 0.0