Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec03g0888 ATGGACTCAAGAGGCCATTCCAATGGCAGAGAACTCGAAACAAAGGAGGTGGACATTAGAAGTCTTTCATCTTCACGCAACAATACACAGTGCATTCATAAGGTGGGGGTTCCACCAAAGCAAAATCTCTTCAAAGAATTTAAAGCCAGAGTGAAAGAGACTTTCTTCGCAGATGATCCTCTGCAAACCTTCAAGGACCAATCGAAGTCTCGAAAGTTGGTCCTGGGAATTCAGGCTATCTTCCCGATATTTGAATGGGGGAGGAGTTACAATCTGACTAAATTTAGAGGAGATATAATTGCTGGACTCACTATTGCAAGTTTGTGTATTCCACAGGATATAGGGTATGCAAAACTTGCTAATTTGGCTCCCCAGTATGGATTATATTCCAGCTTTGTACCACCACTGGTTTATGCTTTAATGGGTAGCTCAAGAGACATAGCGATTGGACCCGTGGCTGTTGTTTCTCTCTTGCTGGGAACACTGCTTCAAAAGGAGATTGATTACCATACACATCCAGAAGAGTATCTGCGGCTTGCATTTACGGCTACTTTTTTTGCTGGGATCACCCAAGCCACTCTAGGGATACTAAGGTTGGGTTTTCTGATTGACTTTCTATCTCACGCTGCCATTGTGGGTTTTATGGGTGGAGCTGCCATCACTATAGCCCTTCAGCAACTTAAAGGCTTTCTTGGTATTCAAAAGTTTACAAAGAAAACAGACATTATTTCTGTAATGCGCTCAGTATTTGAGGCAGCGCATCATGGATGGAACTGGCAGACAATAGTCATTGGAGTAGCTTTTCTATGTTTTCTTCTATTAGCCAAGTATATTGGAAAGAAAAATAAGAACCTTTTTTGGGTGCCTGCAATTGCTCCATTAATATCAGTTATTCTGTCCACCTTCTTTGTTTACATAACCCATGTAGACCAGAAAGGTGTCGCAATCGTGAAACACATAGAGAAAGGAATCAATCCCTCATCAGTGAAGCAAATTTACTTCACCGGTGACAACCTCCTTAAAGGATTCAGGATTGGTGCAGTGGCTGGTATGATAGCATTAACGGAAGCCATAGCAATTGGAAGAACATTTGCTACCATGAAGGATTACCAGCTTGATGGTAACAAAGAAATGGTAGCACTAGGAACAATGAATGTTATTGGTTCAATGACTTCCTGCTATGTGGCAACAGGCTCGTTCTCTCGCTCAGCTGTGAATTACATGTCTGGCTGTCAAACTGCAGTCTCAAACATTGTTATGTCCTGTGTTGTATTTCTAACTCTAGAATTCATCACGCCCCTTTTCAAGTACACTCCAAATGCTATTCTCGCTGTCATCATTATCTCTGCTGTGATCAACTTGATTGACATTCAGGCAGCAATTTTGCTTTGGAAGATTGATAAATTTGATTTTGTTGCTTGTTTGGGAGCCTTCTTCGGTGTGATATTTGCAAGTGTTGAGATAGGCCTCCTAATTGCTGTCTCTATATCATTTGCTAAGATACTCTTACAAGTAACCAGGCCACGGGTTGCTGTTCTCGGAAAGATCCCTAGGACTACAGTATACAGGAACACTCAACAGTATCCAGAAGCAACAAGGGTTCCTGGCATTCTCATTGTGAGAGTTGATTCTGCAATTTACTTTTCCAACTCCAATTACATCAAAGAGAGGATATTGAGATGGTTGGCAGATGAGGAAGAACAAAAAAAGAAGGCTTATTCAACAAAAACTCAGTTTTTGATTGTTGAGATGTCTCCTGTTACCGACGTTGACACTAGTGGAATTCATGCCTTGGAAGAGCTATACAGGAATCTCCAGAAACGAGACATTCAGCTTGTTTTGGCAAACCCTGGGCCGGTAGTGATTGACAAACTCCACGCATCCAATCTTGCTAATCTGATTGGGGAGGACCATATCTTTCTAACAGTTGCTGAAGCTGTCTCATCTTGCTCCCCAAAATTGGTGGAAGAAGCCTAG 1977 41.88 MDSRGHSNGRELETKEVDIRSLSSSRNNTQCIHKVGVPPKQNLFKEFKARVKETFFADDPLQTFKDQSKSRKLVLGIQAIFPIFEWGRSYNLTKFRGDIIAGLTIASLCIPQDIGYAKLANLAPQYGLYSSFVPPLVYALMGSSRDIAIGPVAVVSLLLGTLLQKEIDYHTHPEEYLRLAFTATFFAGITQATLGILRLGFLIDFLSHAAIVGFMGGAAITIALQQLKGFLGIQKFTKKTDIISVMRSVFEAAHHGWNWQTIVIGVAFLCFLLLAKYIGKKNKNLFWVPAIAPLISVILSTFFVYITHVDQKGVAIVKHIEKGINPSSVKQIYFTGDNLLKGFRIGAVAGMIALTEAIAIGRTFATMKDYQLDGNKEMVALGTMNVIGSMTSCYVATGSFSRSAVNYMSGCQTAVSNIVMSCVVFLTLEFITPLFKYTPNAILAVIIISAVINLIDIQAAILLWKIDKFDFVACLGAFFGVIFASVEIGLLIAVSISFAKILLQVTRPRVAVLGKIPRTTVYRNTQQYPEATRVPGILIVRVDSAIYFSNSNYIKERILRWLADEEEQKKKAYSTKTQFLIVEMSPVTDVDTSGIHALEELYRNLQKRDIQLVLANPGPVVIDKLHASNLANLIGEDHIFLTVAEAVSSCSPKLVEEA 658
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11372604 11376712 + CePI673135_03g008880.1 Cec03g0888 198512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec03g0888 658 Gene3D STAS domain 507 653 IPR036513 -
Cec03g0888 658 ProSiteProfiles STAS domain profile. 527 650 IPR002645 -
Cec03g0888 658 Pfam Sulfate permease family 95 475 IPR011547 GO:0016020(InterPro)
Cec03g0888 658 CDD STAS_SulP_like_sulfate_transporter 528 643 - -
Cec03g0888 658 PANTHER SULFATE TRANSPORTER 50 650 IPR001902 GO:0005887(PANTHER)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cec03g0888 658 Pfam STAS domain 528 646 IPR002645 -
Cec03g0888 658 SUPERFAMILY SpoIIaa-like 529 651 IPR036513 -
Cec03g0888 658 NCBIfam sulfate permease 82 646 IPR001902 GO:0016020(InterPro)|GO:0055085(InterPro)
Cec03g0888 658 FunFam Sulfate transporter 31 507 653 - -
Cec03g0888 658 ProSitePatterns SLC26A transporters signature. 124 145 IPR018045 GO:0008271(InterPro)|GO:0008272(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec03g0888 Cec-Chr3:11372604 Cec11g1587 Cec-Chr11:30181370 2.20E-302 dispersed
Cec03g0885 Cec-Chr3:11312720 Cec03g0888 Cec-Chr3:11372604 1.00E-166 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec03g0888 K17470 - csv:101212138 1219.53