Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec03g1078 ATGCCTGAAGATGGAATTAGCCACAGCAGTGAGGATCCCTACTTCAGGTTCGCACCTCATGGGGGGCTTTGTAATCTTCAAAGCCTTTTGAGGCTTGAAAATCAGGAGGTTAGTGGGGATGAAGCTAGCCAAGAGGAGAGCTTTGATATCACTGTCATTGCAGTTTCAGAGATAAGTGAGCTTGGAGACATCATTGAGGAAAGCATTGATATTATTGATATCCCAGGCTCCTGCCATGATTTTTGCAAATATGGTACAAAACATGCTCTTGAAGGGAAGCCTGCAAGTCCAGTCTTGAGAAAAGTTGAATCAGTTGGAGGTGATGACCGGGATTTGAGGAGGATTATAGTTTCATTGGCAAAAAAAAACAAAGATTCAACTAGTCCAAAGTCCTCCCAGATTAACACCATAAATACTACTGACTTGGAGGAAGATATAGTATCTTCCCTTGAGATTGTTACTCCCTCTCCAAAAAGGCTTTTACCTTCCCTCAAGGAAGTGCAGGCTGCGGCAGTGCATTATAGTCGGACGAAACTTAATTTGTCTCTATCAAAGACATTTTCTTTTGCCGGGGCAGTTCACGAACCCCAAGAAATAAAGAAATTCAAAAAGAATGAAATAGAGGAAATGGCTCAAAATAGTGTCCATACCACCGAGTCATCTCGAACAAAATCTTCATATGCAACATACAACAGCTTGAGGCATGGACAAGAGGCAGATAGGAACCCTATAGTGCCACCATTGTCAGTGAAAATGAACATTGTGCGGCTTTCTAGAAATGGAATTAGTTCTAAAATTTCATCGCATCTCCATCAGTATCCAAGGCCACCATGTGAACCCGTCCATGTGGAGCACTGTGGCTCTACCTTAGGAAATGATGTGAAAAAAAGTGAGAATTCGAAAGTGGAACACAGGCTTAAGACCCGTAGGATGATTCTAACTGATTCAAAAAATGGAGATAGCCAGTCTAGAAAGCTGAAGTTTAGGAAGGGGAGGATGGTTGACCTTCAAGCTAAAACCAGTACACCAAGGGGGCTTAAATTTGGGCATGTATGTTTACTTGGTGAGACTCAAAGTCCTAAAGGTGATTCAAGAAAGAGAAACATCAAGGGTAAAGAGGGAAACCAAAATGGTCATGAAGTAAAGGAAGCTGAGAATAGTTCTTTGAGAAAACAAGATCAAGAATTAAAGAAAAAGAGAAGCTTTAGGAGGAAGGAAACTATTGATGGTAAATTGGTTTCTAGTAGAATCAAATCTAAGAGAGTTGTCCTTCGACATCAGGATTCGAGAGGGAAGGAAGAAATCCCAAATTTGTTTAATAATGTCATTGAAGAGACGGCAAGCAAGCTTACACAGACCGGGAAGAGTAAGGTCAAGGCTATGGAAGCTGACATTGATCGCCAAGCCTTTGAATCAGATAAAACACTGATGGATTTTGAATTCCTACCTGATTTTCCAAAAGAGGCTTCTGTATTGAAGTATGAAATTGCTCCAACCGCTGATAATAGTTATTTTGATGGCAAGATTGCTAATGGCAACTGTGAGAATATGGAAAGTTGTCTTTCTTCTATAACTACTAATCAACCATGTATACCTGAAGAATCAACGAAAGGAGATGACATTGAGACACAGCATCCTTTAGAAGATGAACAGAAAGGGTCTTACATTCCTATGGGAATGTTAAGGACATCAGAAGATGGATACAACTGGAGGAAATATGGGCAGAAACAGGTCAAAGGTAGCGAATATCCAAGAAGCTACTATAAATGTACACATTCAAATTGTCAAGTAAAGAAAAAGGTGGAGCGATCTCTTGATGGTCAAATAACAGAAATCATCTATAAGGGTGCTCACAATCATGCAAGACCTGATCCCAATCGTCGAGCCATGCTTGGATCCGTGCCAACTCCAGGTGATACTCCAGAAAGTGGTGAAGGTGGTGGAAACCGTTCCAAACTTGAAGCTGGGCTGGCATGGAGAAACACTCAATATGGGATGAAGGATATCAAACTTATCTCAGATTGTAGTGTTGTTGATGGTCTAGAGAGGACATCCTCTGTATCAGTTGTGACTGAGCTTGCTTATCCATCGTTAAATCCCCAAGGGAAAACTGTTGGTGTTGTTGAATCGGTGGGAACGCCAGAGCTCTCATCCACACTTGCTAGTCATGATGATGATGATGGTGGTGGTGGTGACGATGATGATCTTACAACTCAGGGAAGTATTTCAGTTTGCACAGAAGCTGATGATGCCGAACCTGAATTGAAAAGAAGGAGAAAAGAGGGCAGTTCAATTGAGACAAACTTGGCTTCAAGATCTGTACGTGAACCAAGAGTAGTTGTCCAAATTGAAACTGAAGTTGACATACTTGAAGATGGGTATCGGTGGCGGAAGTATGGGCAAAAAGTTGTCAAAGGAAATCCAAATCCAAGGAGCTACTACAAATGCACTAGTGCAGGCTGTTTAGTAAGGAAACATGTTGAGAGAGCATCACATGATCTGAAATGTGTTATTACAACATACGAAGGAAAACACAATCATGAAGTGCCTGCAGCAAGAAATAGCGGTCAAGTAAACTCGAGTAATGGCAATGCCCAACCGTCTGCTTCTCATGTGCAACCGAACATGGGTTTGTCCAGAATCTCGAACGTCCCAAAGTCTGAAACACAAATTCAAGATCTTGCTGCCCAGTTCTATCCAAAACCGGAATTTAACCATGACTTTCAGAGGTCTGGTTGTTTTGACGCTTTTACAAATGATATCAAACTTGGAGCTCCTTCATTCTGTCAAATGAAGTTTCCTCCACTCCGAAACACCTTGCCTTATAGTTCCTTTGGATTAAATTCAAAGCATACTGGAACAAGTATGTCTGGTTCTTTGGCATCCGTGGTCCCAGACTTTCCGATTTCCTTGCCATTGAACCAGAACCTTTCAGCTGCTGGTTATGATTTTACCAATGGAAGACCAATACCACCATTTCAGGTTTTACTGGCTGGTCAGCAGCTGAGGGACACAGATAGATTCCTCACACCCAAACAGGAGCATGACGACGATAACATCTGTGCTTCGTTCCAACCAGTTGTTGATAGTTCGAGTGGATCTTCATCGTCATCAGTCTCATCGGTTCTGATGACCATTACAGAACAGACAATTCATGTGATGAAGAATGGCCATGGGAAATCATGTCACTTCTCAGATGGCTATTTTGCTCAACGCTGCCTACCACATAAGGTGAGCAAATAA 3243 41.84 MPEDGISHSSEDPYFRFAPHGGLCNLQSLLRLENQEVSGDEASQEESFDITVIAVSEISELGDIIEESIDIIDIPGSCHDFCKYGTKHALEGKPASPVLRKVESVGGDDRDLRRIIVSLAKKNKDSTSPKSSQINTINTTDLEEDIVSSLEIVTPSPKRLLPSLKEVQAAAVHYSRTKLNLSLSKTFSFAGAVHEPQEIKKFKKNEIEEMAQNSVHTTESSRTKSSYATYNSLRHGQEADRNPIVPPLSVKMNIVRLSRNGISSKISSHLHQYPRPPCEPVHVEHCGSTLGNDVKKSENSKVEHRLKTRRMILTDSKNGDSQSRKLKFRKGRMVDLQAKTSTPRGLKFGHVCLLGETQSPKGDSRKRNIKGKEGNQNGHEVKEAENSSLRKQDQELKKKRSFRRKETIDGKLVSSRIKSKRVVLRHQDSRGKEEIPNLFNNVIEETASKLTQTGKSKVKAMEADIDRQAFESDKTLMDFEFLPDFPKEASVLKYEIAPTADNSYFDGKIANGNCENMESCLSSITTNQPCIPEESTKGDDIETQHPLEDEQKGSYIPMGMLRTSEDGYNWRKYGQKQVKGSEYPRSYYKCTHSNCQVKKKVERSLDGQITEIIYKGAHNHARPDPNRRAMLGSVPTPGDTPESGEGGGNRSKLEAGLAWRNTQYGMKDIKLISDCSVVDGLERTSSVSVVTELAYPSLNPQGKTVGVVESVGTPELSSTLASHDDDDGGGGDDDDLTTQGSISVCTEADDAEPELKRRRKEGSSIETNLASRSVREPRVVVQIETEVDILEDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCLVRKHVERASHDLKCVITTYEGKHNHEVPAARNSGQVNSSNGNAQPSASHVQPNMGLSRISNVPKSETQIQDLAAQFYPKPEFNHDFQRSGCFDAFTNDIKLGAPSFCQMKFPPLRNTLPYSSFGLNSKHTGTSMSGSLASVVPDFPISLPLNQNLSAAGYDFTNGRPIPPFQVLLAGQQLRDTDRFLTPKQEHDDDNICASFQPVVDSSSGSSSSSVSSVLMTITEQTIHVMKNGHGKSCHFSDGYFAQRCLPHKVSK 1080
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 22360113 22367671 + CePI673135_03g010780.1 Cec03g1078 198702

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec03g1078 1080 SUPERFAMILY WRKY DNA-binding domain 783 850 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec03g1078 1080 MobiDBLite consensus disorder prediction 852 873 - -
Cec03g1078 1080 ProSiteProfiles WRKY domain profile. 559 623 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec03g1078 1080 MobiDBLite consensus disorder prediction 353 402 - -
Cec03g1078 1080 Pfam Plant calmodulin-binding domain 399 461 IPR012417 GO:0005516(InterPro)
Cec03g1078 1080 Pfam WRKY DNA -binding domain 791 848 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec03g1078 1080 Pfam WRKY DNA -binding domain 565 620 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec03g1078 1080 FunFam WRKY transcription factor 552 624 - -
Cec03g1078 1080 FunFam WRKY transcription factor 57 776 850 - -
Cec03g1078 1080 ProSiteProfiles WRKY domain profile. 785 850 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec03g1078 1080 MobiDBLite consensus disorder prediction 851 873 - -
Cec03g1078 1080 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 409 872 IPR044810 GO:0003700(InterPro)
Cec03g1078 1080 MobiDBLite consensus disorder prediction 749 765 - -
Cec03g1078 1080 Gene3D WRKY domain 777 843 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec03g1078 1080 SMART WRKY_cls 564 622 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec03g1078 1080 SMART WRKY_cls 790 849 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec03g1078 1080 MobiDBLite consensus disorder prediction 618 652 - -
Cec03g1078 1080 Gene3D WRKY domain 559 624 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec03g1078 1080 SMART CaM_binding_2 322 478 IPR012417 GO:0005516(InterPro)
Cec03g1078 1080 SUPERFAMILY WRKY DNA-binding domain 562 623 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec03g1078 1080 Coils Coil 379 399 - -
Cec03g1078 1080 MobiDBLite consensus disorder prediction 717 773 - -
Cec03g1078 1080 MobiDBLite consensus disorder prediction 360 402 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec03g1078 K18835 - - csv:101206605 879.782
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g1743 Cec-Chr1:32018292 Cec03g1078 Cec-Chr3:22360113 5.90E-125 dispersed
Cec03g1078 Cec-Chr3:22360113 Cec10g0393 Cec-Chr10:4729290 2.60E-82 dispersed
Cec11g0481 Cec-Chr11:5187041 Cec03g1078 Cec-Chr3:22360113 8.00E-11 dispersed
Cec03g1078 Cec-Chr3:22360113 Cec05g2623 Cec-Chr5:37015293 1.80E-64 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g850 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone5ag0939 . Cone10ag0603 Cone3ag0629 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla03g01024 Cam03g1073 Cec03g1078 Cco03g1071 Clacu03g1044 Cmu03g1634 Cre03g1334 Lsi06g00700 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005091 1 5 1 1 1 1 2 1 1 1 1 1 2 0 1 2 1 3 1 1 1 0 1 1 1 1 1 2 3 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29231 PF07839 CaM_binding 1.60E-13 No_clan Cec TF