Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cec03g1087 | ATGTCGCGAGAGTCTTCAAATCTTCGTCGTCCGTTTTTCCTCTCCAAAAATCGTCAGCAACAATGGAGGGACGGATGTTTTGGACGATGTTCCTCTGCGATGGAGTACGATTCTGGAATTCCGATGTCTGTGACGGAGGGACACTCCTCTGCCCTTACACCATCCTTGCGCGAAGGTTCTCTTGCTAATTTCGATGCACTGTGGCAAATGAACTTGGGATCAGGTGAAATAATGGGATCTGGATCTTATCCCGTGCGACCTGGAGAGCCAGACTGTTCTTATTACATCAGAACTGGCCTATGTAGATTTGGAGCTACATGTAGATTTAATCATCCACCTAATAGAGAGCTGGCTATTGCCACTGCAAGAATGAAAGGGGAGTTCCCGGAAAGAATTGGACAACCAGAATGTCAGTACTACCTGAAGACAGGAACTTGCAAGTTCGGGGCTACGTGCAAGTTTCATCATCCTAGAGACAAGGCCGGGATTGCTGGAAGAGTCGCCTTAAATATTTTAGGCTATCCACTACGCCCGAGTGAAACTGAATGTGCTTATTATTTAAGAACTGGACAATGCAAGTTTGGAAATACATGTAAATTCCACCATCCTCAACCGACTAATATGATGGTCTCACTGCGTGGGTCTCCTATTTATCCAACCGTACAATCACCAACTCCTGGTCAGCAATCATATCCAGGAGGAAGTACAAATTGGTCAAGGGCTTCATTTATTCCTAGTCCGCGATGGCAAGGCCCTTCCAGTTATGCATCTTTAATATTACCTCAGGGAGTTCTTTCTGTTCCAGGTTGGAATGCATTTAATGATCAGCTAGGATCGGTTTCATCTTCAGAAAGTCCACAACAAACGAGGGAGAATGTATTTCCTGAGAGGCCTGGCCAGCCTGAATGTCAGTTTTACATGAAGACTGGAGATTGCAAGTTTGGTGCCGTTTGTCGATTTCATCATCCCAGAGAAAGAGTACTTCCTGCTCCAGATTGTGTCTTGAGTCCAATAGGCCTTCCATTACGTCCGGGAGAACCTTTGTGCATCTTTTATTCTCGCTATGGGATCTGTAAATTCGGTCCAAGCTGCAAGTTTGATCACCCTATGGGAATCTTCACATACAATCTCTCTGCAGCATCATCAGCCAATGCCCCAGTTCAGCATTTGTTTGGGGCGTCTTCGGGAACAACTGCACTGAACCTATCATCTGAGGGGCTAGTCGAAGCAGGATCTGCAAAGCCGAGGCGGTTATCAATCTCTGAGACTCGAGAGATACCATCCGACGATGAAAATATCGACGCCGAGGGCTGA | 1314 | 46.35 | MSRESSNLRRPFFLSKNRQQQWRDGCFGRCSSAMEYDSGIPMSVTEGHSSALTPSLREGSLANFDALWQMNLGSGEIMGSGSYPVRPGEPDCSYYIRTGLCRFGATCRFNHPPNRELAIATARMKGEFPERIGQPECQYYLKTGTCKFGATCKFHHPRDKAGIAGRVALNILGYPLRPSETECAYYLRTGQCKFGNTCKFHHPQPTNMMVSLRGSPIYPTVQSPTPGQQSYPGGSTNWSRASFIPSPRWQGPSSYASLILPQGVLSVPGWNAFNDQLGSVSSSESPQQTRENVFPERPGQPECQFYMKTGDCKFGAVCRFHHPRERVLPAPDCVLSPIGLPLRPGEPLCIFYSRYGICKFGPSCKFDHPMGIFTYNLSAASSANAPVQHLFGASSGTTALNLSSEGLVEAGSAKPRRLSISETREIPSDDENIDAEG | 437 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 22718840 | 22730917 | + | CePI673135_03g010870.1 | Cec03g1087 | 198711 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cec03g1087 | 437 | PANTHER | PROTEIN PHOSPHATASE RELATED | 56 | 371 | IPR050974 | GO:0003729(PANTHER) | |
| Cec03g1087 | 437 | FunFam | CCCH type zinc finger protein | 295 | 380 | - | - | |
| Cec03g1087 | 437 | Gene3D | - | 86 | 169 | - | - | |
| Cec03g1087 | 437 | ProSiteProfiles | Zinc finger C3H1-type profile. | 86 | 114 | IPR000571 | GO:0046872(InterPro) | |
| Cec03g1087 | 437 | SUPERFAMILY | CCCH zinc finger | 301 | 326 | IPR036855 | GO:0046872(InterPro) | |
| Cec03g1087 | 437 | SUPERFAMILY | CCCH zinc finger | 91 | 114 | IPR036855 | GO:0046872(InterPro) | |
| Cec03g1087 | 437 | SUPERFAMILY | CCCH zinc finger | 346 | 370 | IPR036855 | GO:0046872(InterPro) | |
| Cec03g1087 | 437 | ProSiteProfiles | Zinc finger C3H1-type profile. | 297 | 325 | IPR000571 | GO:0046872(InterPro) | |
| Cec03g1087 | 437 | SMART | c3hfinal6 | 86 | 113 | IPR000571 | GO:0046872(InterPro) | |
| Cec03g1087 | 437 | SMART | c3hfinal6 | 297 | 324 | IPR000571 | GO:0046872(InterPro) | |
| Cec03g1087 | 437 | SMART | c3hfinal6 | 177 | 204 | IPR000571 | GO:0046872(InterPro) | |
| Cec03g1087 | 437 | SMART | c3hfinal6 | 343 | 370 | IPR000571 | GO:0046872(InterPro) | |
| Cec03g1087 | 437 | SMART | c3hfinal6 | 131 | 158 | IPR000571 | GO:0046872(InterPro) | |
| Cec03g1087 | 437 | MobiDBLite | consensus disorder prediction | 278 | 294 | - | - | |
| Cec03g1087 | 437 | ProSiteProfiles | Zinc finger C3H1-type profile. | 343 | 371 | IPR000571 | GO:0046872(InterPro) | |
| Cec03g1087 | 437 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 344 | 370 | IPR000571 | GO:0046872(InterPro) | |
| Cec03g1087 | 437 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 180 | 204 | IPR000571 | GO:0046872(InterPro) | |
| Cec03g1087 | 437 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 134 | 158 | IPR000571 | GO:0046872(InterPro) | |
| Cec03g1087 | 437 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 298 | 324 | IPR000571 | GO:0046872(InterPro) | |
| Cec03g1087 | 437 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 87 | 113 | IPR000571 | GO:0046872(InterPro) | |
| Cec03g1087 | 437 | MobiDBLite | consensus disorder prediction | 278 | 297 | - | - | |
| Cec03g1087 | 437 | FunFam | Zinc finger nuclease 2 | 85 | 162 | - | - | |
| Cec03g1087 | 437 | SUPERFAMILY | CCCH zinc finger | 179 | 205 | IPR036855 | GO:0046872(InterPro) | |
| Cec03g1087 | 437 | SUPERFAMILY | CCCH zinc finger | 135 | 160 | IPR036855 | GO:0046872(InterPro) | |
| Cec03g1087 | 437 | ProSiteProfiles | Zinc finger C3H1-type profile. | 177 | 205 | IPR000571 | GO:0046872(InterPro) | |
| Cec03g1087 | 437 | ProSiteProfiles | Zinc finger C3H1-type profile. | 131 | 159 | IPR000571 | GO:0046872(InterPro) | |
| Cec03g1087 | 437 | Gene3D | - | 286 | 372 | - | - | |
| Cec03g1087 | 437 | Gene3D | - | 175 | 223 | - | - | |
| Cec03g1087 | 437 | MobiDBLite | consensus disorder prediction | 412 | 437 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cec03g0330 | Cec-Chr3:3746301 | Cec03g1087 | Cec-Chr3:22718840 | 2.00E-23 | dispersed | |
| Cec03g1087 | Cec-Chr3:22718840 | Cec05g0702 | Cec-Chr5:5774244 | 2.30E-21 | dispersed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 29232 | PF00642 | zf-CCCH | 3.00E-10 | CL0537 | Cec | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cec03g1087 | - | - | - | 0.0 |