Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec03g1235 ATGGATCAGACGGCTCCTAAGTGTGGTAGGGATGTTTCTAATGGTGAATTTCATCTTCTGTTCTCTGTAGGTTGCAAGAAATCTGGGAAGTCCAGAATCATGTTTCTAGCTGTTGGTCAGTTCTTAGTCAACACTGTTGAATGCACCATGGGTGTTTCTGGAAAATGGTTCAAAGCGTTAGTTGGTTCAAAAAAGTCAGAAAAATCTCAGTCATCAGAACATGATGAAAATGCGAGGACAGTCACCAACAAGTTTTGGCATCGGAGAAAGCATTCTGTTGATATTGATGCTGATAAACTTCAGCATGAGTTTAATTCAAATTTTACCCCATTTGTTGAAGAGTCCAATGCTCTTTCAGAACCAGAAGCTGTTTCTATTCCTTCTGATTCACTTCAAACTTATGATGCATTGCATAGTCAACAAAATGATATAGAAGAACAGGCTGCTATACGCATCCAAACAATGTTTCGAGGATTTCTGGCCAGAAGAGCTCTCCGAGCTCTCAAGGGATTAGTTAGACTTCAAGCTCTTGTCAGGGGTCACGCTGTCAGAAAACAAGCTGCAATAACTCTACGCTGTATGCAAGCTTTAGTGAGAGTCCAGGCTCGTGTTCGAGCAAGGCGTGTACGTATTGCATTGGAAAGTGAAACTGCACAACAAAAACTTCAACAAGAACTTGAAAACCAGGCTCGAGTTCGAGAAATTGAAGAAGGTTGGTGTGACAGTGTTGGATCTGTTGAAGACATTCAAGCAAAATTAATAAAAAGGCAGGAGGCTGCAGCTAAGCGTGAGAGAGCCATGGCATATGCTCTGGCTCATCAGTGGCAAGCAGGATCAAGACAGCAGGCTGCCCTCTCTCAGTTTGAACCAGATAAAAGCAGCTGGGGTTGGAACTGGTTGGAAAGGTGGATGGCTGTTCGTCCATGGGAAAACCGCTTTCTTGACATCAATCTGAGAGATGGAGTGATGATTCGTGAGAATGGATTATCTGAGGGCAAAAGTAACACTAAATCTCATTTAAAGACTACTGCCAAGAAGACAAACTTAGTAACTGATCAATCAAACCTCTCGAGCCAAAAAACTGCTGCCTCACATTCTGATGGATGTGGTTCGTCATCTCCCACTAAGTCAGCTGGCACTGTAGAAGTATCCAGTGCACAGAGTCAGAAGCTCAAGCATAAACATGCACCTGAGAGGCCGTTTGAAGAAGTCAAAGCAAAAGTGGATACTGGTTTAAGATCACATAGCAATCCAAAAGAGAGATCCACACCATTGGTCAAAAATGCAAAGAAGCGATTATCCTTGCCTAATAATGATCCTGGTAGTCAAAATCAAACGGTGAGAAATTCCACTGGCAAAGCAACCATGGCGAAGTCAATCAACGATAAACCAAAGTCAATTTCCAGATCAGGTGACTCAAAATCTGCAAAACCTAGATCGCTGAATTGA 1449 42.58 MDQTAPKCGRDVSNGEFHLLFSVGCKKSGKSRIMFLAVGQFLVNTVECTMGVSGKWFKALVGSKKSEKSQSSEHDENARTVTNKFWHRRKHSVDIDADKLQHEFNSNFTPFVEESNALSEPEAVSIPSDSLQTYDALHSQQNDIEEQAAIRIQTMFRGFLARRALRALKGLVRLQALVRGHAVRKQAAITLRCMQALVRVQARVRARRVRIALESETAQQKLQQELENQARVREIEEGWCDSVGSVEDIQAKLIKRQEAAAKRERAMAYALAHQWQAGSRQQAALSQFEPDKSSWGWNWLERWMAVRPWENRFLDINLRDGVMIRENGLSEGKSNTKSHLKTTAKKTNLVTDQSNLSSQKTAASHSDGCGSSSPTKSAGTVEVSSAQSQKLKHKHAPERPFEEVKAKVDTGLRSHSNPKERSTPLVKNAKKRLSLPNNDPGSQNQTVRNSTGKATMAKSINDKPKSISRSGDSKSAKPRSLN 482
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 27419827 27428987 + CePI673135_03g012350.1 Cec03g1235 198859

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec03g1235 482 MobiDBLite consensus disorder prediction 329 482 - -
Cec03g1235 482 ProSiteProfiles IQ motif profile. 169 196 - -
Cec03g1235 482 PANTHER IQ-DOMAIN 5-RELATED 53 437 - -
Cec03g1235 482 ProSiteProfiles IQ motif profile. 145 173 - -
Cec03g1235 482 SMART iq_5 144 166 IPR000048 GO:0005515(InterPro)
Cec03g1235 482 SMART iq_5 167 188 IPR000048 GO:0005515(InterPro)
Cec03g1235 482 MobiDBLite consensus disorder prediction 329 387 - -
Cec03g1235 482 MobiDBLite consensus disorder prediction 388 416 - -
Cec03g1235 482 MobiDBLite consensus disorder prediction 435 464 - -
Cec03g1235 482 Pfam IQ calmodulin-binding motif 147 166 IPR000048 GO:0005515(InterPro)
Cec03g1235 482 Gene3D - 143 192 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec03g1235 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g1537 Cec-Chr1:29958930 Cec03g1235 Cec-Chr3:27419827 4.80E-11 dispersed
Cec03g1235 Cec-Chr3:27419827 Cec09g2145 Cec-Chr9:38401423 2.80E-33 dispersed
Cec03g1235 Cec-Chr3:27419827 Cec05g1978 Cec-Chr5:31798588 6.30E-41 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec09g2145 . 1 473 IQD Protein Family AT3G52290 54.7 6.1e-104 374.8
Cec05g2305 . 1779 1988 IQD Protein Family AT2G26410 50.2 2.8e-42 170.2
Cec03g1235 . 50 457 IQD Protein Family AT3G22190 57.8 1.4e-97 353.6
Cec05g1978 . 1 438 IQD Protein Family AT2G26180 62.0 1.8e-121 433.0
Cec04g2056 . 49 322 IQD Protein Family AT2G33990 52.1 7.2e-63 237.7
Cec07g1090 . 133 316 IQD Protein Family AT2G33990 54.0 1.7e-48 189.9
Cec04g2056 . 49 270 IQD Protein Family AT3G15050 50.5 5.4e-55 211.5
Cec07g1090 . 136 309 IQD Protein Family AT3G15050 62.1 3.5e-54 208.8
Cec01g0768 . 111 463 IQD Protein Family AT5G13460 50.4 1.6e-75 280.4
Cec06g0277 . 1 508 IQD Protein Family AT4G00820 50.9 2.1e-114 409.8
Cec05g0021 . 1 455 IQD Protein Family AT4G00820 50.5 1.3e-103 374.0
Cec06g0277 . 1 508 IQD Protein Family AT1G01110 50.2 3.2e-110 396.0
Cec09g0022 . 1 402 IQD Protein Family AT3G16490 50.1 2.7e-66 249.6
Cec03g1666 . 1 391 IQD Protein Family AT3G16490 50.2 6.6e-65 245.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004215 1 3 1 2 1 1 2 1 1 2 1 1 2 1 1 2 1 4 1 1 1 1 1 1 1 1 1 3 1 1 42