Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec03g1252 ATGGCTACTCAGGCACTTGTCTCATCTTCTTTAACCTCTTCAGTGGGTGCAGCCAGACAGAGATTAGGGGCAAAACCGTCTTTTGGATCTTCCAGAAAATCAGCTTCTTTTGTTGTTAGAGCTCAAGCCACTCCTCCTGTTAAGCAAGGAGCAGATAGACAACTATGGTTCGCTTCAAAACAAAGTCTTTCTTACTTGGATGGAAGTATCCCGGGCGATTACGGATTCGACCCATTGGGGCTATCAGACCCCGAAGGAACAGGAGGGTTTATCGAGCCAAGATGGTTGGCATACGGTGAGGTGATCAACGGGAGGTTCGCGATGTTGGGAGCAGCCGGAGCCATTGCCCCAGAGATCTTTGGATCCCTAGGGTTAATCCCACCAGAAACAGCCCTCCCATGGTTCAAAACAGGGGTCATCCCACCAGCAGGAACCTACAACTATTGGGCAGACCCTTACACACTCTTTGTATTAGAAATGGCTCTAATGGGCTTTGCTGAACACAGAAGATTTCAAGATTGGTCCAAGCCAGGGTCCATGGGAAAACAATACTTTTTGGGCCTAGAAAAGTTCTTGGGTGGGTCAGGGGACCCAGCTTACCCAGGTGGGCCCTTGTTCAACCCATTAGGGTTTGGGAAAGATGAGAAGTCATTGAAGGATTTGAAGCTGAAGGAAGTGAAGAATGGAAGGCTTGCAATGTTGGCAATATTGGGTTATTTTGTACAAGGTCTTGTCACTGGGGTTGGGCCTTACCAAAACCTTTTGGATCATTTGTCTGACCCAGTCAACAACAATGTTTTGACCAGCCTTAAATTCCACTAG 822 47.69 MATQALVSSSLTSSVGAARQRLGAKPSFGSSRKSASFVVRAQATPPVKQGADRQLWFASKQSLSYLDGSIPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEVINGRFAMLGAAGAIAPEIFGSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWSKPGSMGKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH 273
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 27864299 27866025 - CePI673135_03g012520.1 Cec03g1252 198876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec03g1252 273 Gene3D Chlorophyll a/b binding protein domain 54 272 - -
Cec03g1252 273 SUPERFAMILY Chlorophyll a-b binding protein 52 269 - -
Cec03g1252 273 FunFam Chlorophyll a-b binding protein, chloroplastic 54 272 - -
Cec03g1252 273 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 14 268 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro)
Cec03g1252 273 Pfam Chlorophyll A-B binding protein 64 243 IPR022796 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec03g1252 Cec-Chr3:27864299 Cec08g1644 Cec-Chr8:27790748 2.00E-44 dispersed
Cec03g1252 Cec-Chr3:27864299 Cec06g1811 Cec-Chr6:31568582 1.50E-39 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec03g1252 K08909 - csv:101202993 528.865