Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec03g1373 ATGCAGTCAAAGTCTGAAACCAATAATCAGCTTGATCCAAATGGTGCTCCATCCACGAGTATCTATTATGAACCCTGGTGGCGTGGTATGGGGTACAATACTTTTCCGTTACCTGTGGTAGGGGGAAATGCTTCCAGTTCAACTTCTCCTGAATTCCCTAATGGTGGTTCAGAGTCAAATGATGGCCAGTCTGTGTCTAATAATGATGTAAATGATGAAGAAGATGATGTTTCGAAAGAAGCGCAAGCTACTGGATCTCCACATTCTGCGGGAAGCTACAGACAGGATGCTCAGAAGATGCAGCATGTTTCATCCACTTTGCCAGCTATGCACGGTGAATGTGGGACGCAGTCTACACAACTTGAACTTGTTGGTCACTCTATTGCTTGTGCATCAAATCCCTATCAGGATCCATATTATGGAGGAATGATGGCTTTCTATGGTCATCAGCCCTTGGGCTATCCTATGGTCGGAGGACCACATGCTAGAATGCCATTGCCCATTGAGATAGCACAAGACCCCGTTTTCGTGAATGCAAAGCAATACCAAGGAATTTTGAGGCGAAGGCAAGCACGTGCAAAAGCTGAGGCTGAGAAGAAGTTGATAAAAGCCAGAAAGCCATACCTTCATGAGTCTAGACATCAGCATGCCATAAGAAGGTCAAGGAGTAGTGGAGGACGTTTTGCGAAGAAAAACGAAGCTGATGGAAAGGAGATGCATTCTGATAAAGTAAACGAGAGTGGTTACTGCCTAAATGATGGTTCTGAACAGCAGAACGGAAGCTCCTTGACGAACAAGGCCCCAGAATAG 810 45.43 MQSKSETNNQLDPNGAPSTSIYYEPWWRGMGYNTFPLPVVGGNASSSTSPEFPNGGSESNDGQSVSNNDVNDEEDDVSKEAQATGSPHSAGSYRQDAQKMQHVSSTLPAMHGECGTQSTQLELVGHSIACASNPYQDPYYGGMMAFYGHQPLGYPMVGGPHARMPLPIEIAQDPVFVNAKQYQGILRRRQARAKAEAEKKLIKARKPYLHESRHQHAIRRSRSSGGRFAKKNEADGKEMHSDKVNESGYCLNDGSEQQNGSSLTNKAPE 269
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30752786 30755039 - CePI673135_03g013730.1 Cec03g1373 198997
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec03g1373 269 MobiDBLite consensus disorder prediction 248 269 - -
Cec03g1373 269 MobiDBLite consensus disorder prediction 37 101 - -
Cec03g1373 269 ProSitePatterns NF-YA/HAP2 subunit signature. 176 196 IPR018362 GO:0003677(InterPro)|GO:0016602(InterPro)
Cec03g1373 269 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 16 259 IPR001289 GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Cec03g1373 269 MobiDBLite consensus disorder prediction 209 225 - -
Cec03g1373 269 MobiDBLite consensus disorder prediction 82 101 - -
Cec03g1373 269 PRINTS CCAAT-binding transcription factor subunit B signature 174 196 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec03g1373 269 PRINTS CCAAT-binding transcription factor subunit B signature 205 228 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec03g1373 269 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 174 228 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec03g1373 269 Gene3D - 171 233 - -
Cec03g1373 269 MobiDBLite consensus disorder prediction 1 17 - -
Cec03g1373 269 ProSiteProfiles NF-YA/HAP2 family profile. 171 231 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec03g1373 269 MobiDBLite consensus disorder prediction 1 22 - -
Cec03g1373 269 MobiDBLite consensus disorder prediction 209 269 - -
Cec03g1373 269 MobiDBLite consensus disorder prediction 226 244 - -
Cec03g1373 269 SMART cbf3 170 231 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec03g1373 269 MobiDBLite consensus disorder prediction 39 67 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec03g1373 Cec-Chr3:30752786 Cec09g0410 Cec-Chr9:3528581 7.40E-39 dispersed
Cec03g1373 Cec-Chr3:30752786 Cec02g2427 Cec-Chr2:41481306 1.70E-75 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29236 PF02045 CBFB_NFYA 1.70E-25 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec03g1373 K08064 - csv:101212860 495.352