Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec03g1406 ATGGTGAACCCACCACTCCCCCTCCAGCAAATATCCCCAAAAATGGCTGCCACGAACACCAATGTCGCCGGCGACGTCGACGATCGCGTCTTGGCCACCGCTCAGCAGATCGTCAAAAGCTTCAATACTCCTAAAGAGGTCCGTGAGGATATGCTCTTGATTCTCTCTAGTTTTGATAATCGTCTTTCCAGTATTAGTAGTATGATCAATAGTGATGACTCCAAGACTAAGAACGATAGGTTGGACGCCGCCGAGAAGGTGATTCTACGTTGGGACACAAATTCCGATGTGTCGAGTCGGTCGTTTAATTGGGAGGATTCGCGGGACGAGGCGGCTGAATATTTATCGGCGGTGGATGATATACTCCAGTTAATGGAAGAGCTTTCAATTGGGTCTGAATCGACCGACATCGTAGACCGAGCAGAAAACGCGATCCAAATGGCGATGTGTCGGCTCGAGAGCGAATTTCGCCATATCTTGATCCAGAGCACAGTCCCTCTCGACGCCGAGCGGCTTTACGGCTCGATCCGTAGAGTTCACCTCTCGTTTGCGTCACATTACAGTGAAATTGACGACGAATTCGAGAGTTTCACCGAGGAAAGTTGCAGTTCCGGGCGATTTCATGAGCGAGGTGCGACAATTGGAGAAGATTCTTGGGTTGATTTGATCCATCCTGATGCGGCTGTTGATCTTTCAGAGATTGCGGACCGTATGATTCGCTCTGGCTATGAAAAGGAGTGTGTTCAAGTCTATAGCACTGTTCGTCGTGATGCTTTGGACGAGTGCTTGGCGATTCTTGGCGTCGAACGACTCAGCATTGAGGAGGTTCAGAAAAGTGATTGGAAATTCTTGGATGAGAAGATGAAGAAATGGATTCAGGCAGTCAAAATTACAGTTCGGTTGATTTTGGAAGGTGAGAAGAGGCTCTGTGATCAGATTTTCAATGGCGCTAATGAATCCATGGAGATTTGTTTTAACGAAACAGCAAAAGGGTGTGTAATGCAGCTATTGAATTTTGGTGAGGCAGTGGCTATTGGGAAGAGATCACCTGAGAAGCTGTTCCGAATCTTGGATATGTACGACGCTTTGGCTGGGGTTTTGCCCAACTTAGAAGCCATGGTTTCTGATGGATTTTTGATCACTGAAGCACATGGAGTATTGTCGAGACTAGGAGAAGCAGCCACAGGGACATTTGCCGAGTTTGAGAATGCCATTAAAAGCGAAAATTCGAAGAAAGCAATGCAAAACGCCGAGATTCACCCACTTATTCGATATGTAATGAATTATGTTAGATTGCTGGTTGATTACAGTAAGACAATGAACTCTCTTTTAGAAGACGAGGAAGTGCAAGACTTGCCAAATGAGAGGGATAATGACGATAATCTGCAGTTGGAAAGTACATCACCTTTAGCTCGTAGATTATTAATGCTGTTATCGTCTTTGGAGTCCAATCTTATGGAAAAATCCAAGTTGTATGAGGATGTTGCTATGCAGTTTATATTTCTAATGAACAATATACTGTACATAGTGAAAAAGGTGAAAGATTCTGAGCTTGCCCAGCTGCTTGGCGATAACTGGCTTCGTAGGCATAGTGGCCAAATTCGCCAATATGAAACGAGTTACCTTAGAGCTTCTTGGAGCAAAGTTTTGTCTTGCTTAAAGGATGAAGGTATTGGTGGGAGCACAAGCAATGCCTCCAAGGTAGCTTTGAAGGAAAAGTTCAAGAATTTCAATGCAGGTTTTGAGGAAATCTGCAGGGTTCAAACAGCTTGGAAGGTATCAGATGCTCAACTACGCGATGAGCTGATAATATCCGTTTCGGAGAAGGTGATTCCAGCGTATCGCTCCTTCTTAGGAAGGTTTAGAAATCAGTTAGAGAGTGGAAGGAATTCCGGGAAGTACATAAAGTACACGCCAGAGGATTTAGAGAACTCTCTATCAAATTTGTTTGAAGGATCAGCTGCTGTATTACATCACTTGCGAAGAAAGGGTACTTGA 1998 44.69 MVNPPLPLQQISPKMAATNTNVAGDVDDRVLATAQQIVKSFNTPKEVREDMLLILSSFDNRLSSISSMINSDDSKTKNDRLDAAEKVILRWDTNSDVSSRSFNWEDSRDEAAEYLSAVDDILQLMEELSIGSESTDIVDRAENAIQMAMCRLESEFRHILIQSTVPLDAERLYGSIRRVHLSFASHYSEIDDEFESFTEESCSSGRFHERGATIGEDSWVDLIHPDAAVDLSEIADRMIRSGYEKECVQVYSTVRRDALDECLAILGVERLSIEEVQKSDWKFLDEKMKKWIQAVKITVRLILEGEKRLCDQIFNGANESMEICFNETAKGCVMQLLNFGEAVAIGKRSPEKLFRILDMYDALAGVLPNLEAMVSDGFLITEAHGVLSRLGEAATGTFAEFENAIKSENSKKAMQNAEIHPLIRYVMNYVRLLVDYSKTMNSLLEDEEVQDLPNERDNDDNLQLESTSPLARRLLMLLSSLESNLMEKSKLYEDVAMQFIFLMNNILYIVKKVKDSELAQLLGDNWLRRHSGQIRQYETSYLRASWSKVLSCLKDEGIGGSTSNASKVALKEKFKNFNAGFEEICRVQTAWKVSDAQLRDELIISVSEKVIPAYRSFLGRFRNQLESGRNSGKYIKYTPEDLENSLSNLFEGSAAVLHHLRRKGT 665
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 31405084 31407081 - CePI673135_03g014060.1 Cec03g1406 199030

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec03g1406 665 Gene3D Exocyst complex component Exo70 86 657 - -
Cec03g1406 665 SUPERFAMILY Cullin repeat-like 79 651 IPR016159 -
Cec03g1406 665 Pfam Exo70 exocyst complex subunit C-terminal 289 647 IPR046364 GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro)
Cec03g1406 665 Pfam Exocyst complex component Exo70 N-terminal 81 162 - -
Cec03g1406 665 PANTHER EXOCYST COMPLEX PROTEIN EXO70 68 653 IPR004140 GO:0000145(InterPro)|GO:0000145(PANTHER)|GO:0006887(InterPro)|GO:0006887(PANTHER)
Cec03g1406 665 FunFam Exocyst subunit Exo70 family protein 97 658 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec03g1406 K07195 - - csv:101205970 1124.77
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec03g0044 Cec-Chr3:421672 Cec03g1406 Cec-Chr3:31405084 1.30E-107 dispersed
Cec03g0358 Cec-Chr3:3997738 Cec03g1406 Cec-Chr3:31405084 3.30E-242 dispersed
Cec03g1406 Cec-Chr3:31405084 Cec07g1746 Cec-Chr7:32994799 5.00E-121 dispersed
Cec03g1406 Cec-Chr3:31405084 Cec02g2161 Cec-Chr2:39048651 3.60E-87 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec05g2404 . 12 653 EXO70 exocyst subunit family AT5G03540 76.6 9.9e-287 982.6
Cec04g1189 . 1 638 EXO70 exocyst subunit family AT5G03540 71.1 2.5e-266 914.8
Cec04g1189 . 1 638 EXO70 exocyst subunit family AT5G52340 80.3 1.1e-298 1022.3
Cec05g2404 . 14 653 EXO70 exocyst subunit family AT5G52340 75.2 4.1e-274 940.6
Cec04g1189 . 145 631 EXO70 exocyst subunit family AT5G52350 63.9 2.2e-176 615.9
Cec05g2404 . 149 653 EXO70 exocyst subunit family AT5G52350 60.3 2.8e-168 589.0
Cec03g0044 . 1 623 EXO70 exocyst subunit family AT5G58430 66.7 1.0e-245 846.3
Cec03g0044 . 1 622 EXO70 exocyst subunit family AT1G07000 52.4 7.8e-174 607.4
Cec07g1652 . 60 673 EXO70 exocyst subunit family AT5G13150 53.3 2.9e-174 609.0
Cec01g0878 . 111 722 EXO70 exocyst subunit family AT5G13990 54.5 1.0e-188 657.1
Cec07g1568 . 9 609 EXO70 exocyst subunit family AT1G72470 65.0 1.3e-216 749.6
Cec07g1568 . 9 607 EXO70 exocyst subunit family AT1G54090 61.8 3.9e-208 721.5
Cec07g1568 . 9 608 EXO70 exocyst subunit family AT3G14090 64.2 2.4e-218 755.4
Cec03g1406 . 27 664 EXO70 exocyst subunit family AT5G50380 61.7 1.1e-224 776.5
Cec03g0358 . 15 627 EXO70 exocyst subunit family AT5G50380 61.1 4.8e-212 734.6
Cec08g1297 . 11 682 EXO70 exocyst subunit family AT4G31540 73.6 1.3e-294 1008.8
Cec10g2088 . 35 630 EXO70 exocyst subunit family AT3G09520 55.9 2.5e-178 622.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001393 4 1 3 4 4 2 4 2 2 2 2 2 4 2 2 3 2 2 4 2 2 2 2 2 2 2 2 4 2 1 74