Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec03g1545 ATGGATCGTACAATGGCGATTGATTTTGGTCTAATTTCTCCGATAAAACCCATTTTCCACTGCTGGGGCTGCTTACAAGTTGCTAGGGTTTATCTTCTTCCTCCTTCTGTAATCTTCTATACCGTTGGAGCCGCTTCTCTATCTTTATCTTCAGAACGTGAAATGGCCGCAGCTCAGCTCACTGGGTCCTTAATTTCTGCGAGGAATTTGCCTTCTTTCAATGGCCTTCGTCCTTCTGCCGTGAAATTCTCTCCTTCGGTTGCCCATGTTAGAGTCGGGGGTTTGGCCAACAGATCCTTCACTGGCTTGGTCGTCAGAGCTGCTACTGTGGTTGCTCCAAAGTACACTTCAATCAAGCCATTGGGTGATAGAGTGTTGGTGAAGTTAAAGGAAGCTGAAGAGAAGACTGATGGAGGGATTTTACTTCCAACAACAGCTCAGTCGAAACCCCAAGGAGGGGAGGTCGTTGCAGTTGGAGAGGGCAAGACAATTGGAAATACCAAAGTGGAAGCAAGTGTAAAGACTGGTGCTCAAGTTGTGTACTCCAAGTATGCTGGAACTGAGTTAGAATTCAATGGTTCAAAGCATCTTATTCTCAAGGAAGATGATATAGTTGGTATCCTAGAGACAGATGATGCGAAAGATCTTCAGCCCCTAAACGACCGGGTCTTGATCAAGGTAGCTGAGGCTGAGGAAAAAACAGCAGGAGGTTTATTGTTGACAGAGGCAACCAAAGAGAAGCCTTCCATCGGAACGGTGATCGCAGTTGGTCCTGGTCCTCTGGACGAGGAGGGCAAAAGGAAACCGCTATCTATTGCAGTGGGAAACAACGTGATGTATTCAAAGTACGCTGGAAATGAGTTCAAAGGCAAAGATGGCTCTGATTACATCGCTTTGAGGGCTTCAGACGGGGGAATTGAGATGGATTTTGAGAGACGTAGAAGAGAATTGAAAAAGGCAACTGAGATGGAAATTTCGACCATCGCCGTTCTCCTTCTCTGCCGGCGACGTAGAGCCCCTGCCTTCTCTGCCTCTCCAATTTCTCCGACGACTTATCTCTCGTTTGCTTCCACTTTCCTATTGAAACAATCGATGGGTTCAGACGAGGAGGTTGTGGAAATTAGTAGCTTGGAAAGGGGTTTATTGTCAGAATGCAGTTCTGATTTGGAACCTGAAAGTGATGATGAGCCTGTGTTGTTTGCAGCTTCCTTCCAAGAGATGGAAGACAACTTTGTAAAGTATCATACAACACAATGGGTCCTTTACTCCTTGCTTTTGATTTTAGCGTGGGGGATTGGGTTGTTGATGCTGCTTTATCTACCAGTAAGAAGATACATTCTGCGGAAAGATATTCAATCGAAGAAGCTTTATCTTACACCAAATTCCATAATCTACAAGGTTACAAGACCTGTACCTTTTCCATGTTTTGGAGTATTGAAGAAAGAGAAGCATGTTTTGTTGCATTCAGTGGCAGACATTATAATTGAACAAGGATATTTAGAGTCTCTCTATGGAGTTTACTCTATTAGGATAGAGAATGCTGGCGTGAGACGACCACCTGGTGATGACGTTCAAATTCAAGGAATTACAGATCCAATTGCATTTAAAAAGGCTGTTCTAATGCGTCTTTCTGGTATGAGAGATGATGGTAACTCTTCTCAAATTTCTACAATTGAAGAAGTTTTAAATACAAAGTCATCCCCATCTAAGTCTCGAAAGTATGATCTGTATTTATATTCGGGGGAACAAGTACTTCAGAAAGTAGAGGAGGTTGGAAGCTCTGTGAAGAGAGTTCAAGCTTTGATTGAAGAGCAACGGTCACAATTCATGTATAGTACGAATAAGCATATCACTGATTATTGTACCAATAAGCACATCACTGATTCTGGTCCTGTCAAAAAGGGAGTAAATGTCTATATGATGAAATGGGATTCAGATCATGGATTGATGATAAACCATTATGACTATAGGTGCTTCTCTTTTAGATGCCGTGATTGTGATCAGCTCCAAAATGGTACAAGACCAGTCCCAATTTCATGA 2040 42.89 MDRTMAIDFGLISPIKPIFHCWGCLQVARVYLLPPSVIFYTVGAASLSLSSEREMAAAQLTGSLISARNLPSFNGLRPSAVKFSPSVAHVRVGGLANRSFTGLVVRAATVVAPKYTSIKPLGDRVLVKLKEAEEKTDGGILLPTTAQSKPQGGEVVAVGEGKTIGNTKVEASVKTGAQVVYSKYAGTELEFNGSKHLILKEDDIVGILETDDAKDLQPLNDRVLIKVAEAEEKTAGGLLLTEATKEKPSIGTVIAVGPGPLDEEGKRKPLSIAVGNNVMYSKYAGNEFKGKDGSDYIALRASDGGIEMDFERRRRELKKATEMEISTIAVLLLCRRRRAPAFSASPISPTTYLSFASTFLLKQSMGSDEEVVEISSLERGLLSECSSDLEPESDDEPVLFAASFQEMEDNFVKYHTTQWVLYSLLLILAWGIGLLMLLYLPVRRYILRKDIQSKKLYLTPNSIIYKVTRPVPFPCFGVLKKEKHVLLHSVADIIIEQGYLESLYGVYSIRIENAGVRRPPGDDVQIQGITDPIAFKKAVLMRLSGMRDDGNSSQISTIEEVLNTKSSPSKSRKYDLYLYSGEQVLQKVEEVGSSVKRVQALIEEQRSQFMYSTNKHITDYCTNKHITDSGPVKKGVNVYMMKWDSDHGLMINHYDYRCFSFRCRDCDQLQNGTRPVPIS 679
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 33598378 33610245 - CePI673135_03g015450.1 Cec03g1545 199169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec03g1545 679 SMART Cpn10_2 215 307 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Cec03g1545 679 SMART Cpn10_2 117 208 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Cec03g1545 679 Gene3D GroES chaperonin 111 211 IPR037124 GO:0006457(InterPro)
Cec03g1545 679 Gene3D GroES chaperonin 212 304 IPR037124 GO:0006457(InterPro)
Cec03g1545 679 SUPERFAMILY GroES-like 215 303 IPR011032 -
Cec03g1545 679 ProSitePatterns Chaperonins cpn10 signature. 216 240 IPR018369 GO:0005524(InterPro)|GO:0006457(InterPro)
Cec03g1545 679 Hamap Co-chaperonin GroES [groES]. 117 209 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Cec03g1545 679 CDD cpn10 117 208 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Cec03g1545 679 SUPERFAMILY GroES-like 116 209 IPR011032 -
Cec03g1545 679 Pfam Chaperonin 10 Kd subunit 118 207 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Cec03g1545 679 Pfam Chaperonin 10 Kd subunit 216 303 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Cec03g1545 679 ProSitePatterns Chaperonins cpn10 signature. 118 142 IPR018369 GO:0005524(InterPro)|GO:0006457(InterPro)
Cec03g1545 679 Hamap Co-chaperonin GroES [groES]. 215 309 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Cec03g1545 679 PRINTS 10kDa chaperonin signature 195 208 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Cec03g1545 679 PRINTS 10kDa chaperonin signature 118 133 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Cec03g1545 679 PRINTS 10kDa chaperonin signature 174 186 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Cec03g1545 679 PRINTS 10kDa chaperonin signature 140 161 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Cec03g1545 679 FunFam 10 kDa chaperonin 214 304 - -
Cec03g1545 679 FunFam 20 kDa chaperonin, chloroplastic 111 210 - -
Cec03g1545 679 PANTHER EXPRESSED PROTEIN 365 608 - -
Cec03g1545 679 CDD cpn10 216 303 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec03g1545 Cec-Chr3:33598378 Cec06g0003 Cec-Chr6:92702 8.90E-41 dispersed
Cec03g1545 Cec-Chr3:33598378 Cec05g0332 Cec-Chr5:2752855 3.20E-06 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec03g1545 K04078 - csv:101212396 454.521