Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec03g1546 ATGACGAAGCCGTCGTCCCCTCACAAATCTTCCGCCGCCGCCGTTGACACTTCCGATTCACGGTACAAGGGAGTGCGGCGCCGGAAATGGGGCAAATGGGTTTCCGAAATCCGTCTCCCCAACAGCCGCGAGCGGATCTGGTTAGGTTCTTATGATTCAGCCGAGAAAGCGGCGCGTGCATTCGACGCGGCTCTATTTTGCTTACGTGGCCGTTCCGCTCGTTTTAATTTCCCAGATAACCCACCCGAAATTGCCGGTGCTAGTTTGCTCTCCCGAGCAGAGATTCAATCCGTCGCCGCCCAATTCGCTAACTCCGACCCACCACCCTCGTCGGAATGTACACGACCCGCCGTCGATTCGCCGTCGGTGGTTTCCGAAGTGACTACCTCTGTAATTGAATGTGATGAAAGATCGCCGTTTTTGGATCTTCACACCGCCATGGGATCGGGAAATTACGGGTCGGATTTCGGGTTATTTCCGGAATATAATCCGTTTTATAATGAAATGTTTATTAATGGTTCTTCTTCTTCAATAACAGCTCCTTGTTTTGATTATGGAGATGAGAATTTTGACGCCATCACCACTCATCAAGATTCATCATTCCTCTGGAATTTCTGA 618 50.32 MTKPSSPHKSSAAAVDTSDSRYKGVRRRKWGKWVSEIRLPNSRERIWLGSYDSAEKAARAFDAALFCLRGRSARFNFPDNPPEIAGASLLSRAEIQSVAAQFANSDPPPSSECTRPAVDSPSVVSEVTTSVIECDERSPFLDLHTAMGSGNYGSDFGLFPEYNPFYNEMFINGSSSSITAPCFDYGDENFDAITTHQDSSFLWNF 205
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 33619588 33620205 + CePI673135_03g015460.1 Cec03g1546 199170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec03g1546 205 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 12 125 IPR051032 -
Cec03g1546 205 SUPERFAMILY DNA-binding domain 20 80 IPR016177 GO:0003677(InterPro)
Cec03g1546 205 MobiDBLite consensus disorder prediction 1 17 - -
Cec03g1546 205 Pfam AP2 domain 20 70 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec03g1546 205 PRINTS Ethylene responsive element binding protein signature 22 33 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec03g1546 205 PRINTS Ethylene responsive element binding protein signature 44 60 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec03g1546 205 ProSiteProfiles AP2/ERF domain profile. 21 78 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec03g1546 205 SMART rav1_2 21 84 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec03g1546 205 FunFam Ethylene-responsive transcription factor 2 20 79 - -
Cec03g1546 205 CDD AP2 20 80 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec03g1546 205 Gene3D AP2/ERF domain 20 79 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec03g1546 205 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec03g1546 Cec-Chr3:33619588 Cec08g0577 Cec-Chr8:17105765 3.10E-21 dispersed
Cec05g1762 Cec-Chr5:29282299 Cec03g1546 Cec-Chr3:33619588 4.10E-31 transposed
Cec08g1002 Cec-Chr8:21889367 Cec03g1546 Cec-Chr3:33619588 5.30E-32 transposed
Cec03g1546 Cec-Chr3:33619588 Cec09g0132 Cec-Chr9:1162479 2.50E-15 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29244 PF00847 AP2 8.10E-13 CL0081 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec03g1546 - - - 0.0