Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec03g1578 ATGTTTCCCTTCACATCAACTCAGTGGCAGGAGCTTGAACATCAAGCTCTCATCTTCAAATACATGGTTTCTGGCATTCCTATACCTCCCGATCTTCTTTTCGGTATTAAAAGAAGTACCTTGGACTCTACTTTCACTTCTAAGCTCTTCCCCCACCATCCTCAACATGTTGGATGGAACTATTTGCAGATGAGTTTGGGGAGGAAAATAGACCCAGAACCAGGGAGGTGTAGGAGAACTGATGGGAAAAAGTGGAGATGCTCAAAAGAAGCATATCCAGATTCGAAATACTGTGAGAGACACATGCATAGAGGGAAAAATCGTTCAAGAAAGCCTGTGGATGTTTTGAAAACAACAGCAACAAACGACTTAAACCACCACTCAAATCCAACATTTTCTTCCTTAAAGAACAACTCATCGTTACTTTCCTATCGGCCCTTCCCCGGTCATCGAATATCTTCAACTCCTAATGGGAATGGCATATCAACCAAAGACACCAATACCCTCTTGCTTCTGGAACCTGGTTCTTACTCGGACAGAAACCCAGATTACAGAAGTAGGTACACTTATGGGCTAAAGGAGGAAGTGGATGAACATGTTTTCTTCTCACAAGAACCATCTGAAGCTACTGGGAGAGCTGATTACTCTGCTTCGTCCATAGCTAATTCTCTGCAACTGACACCACTAACGATGAGTTGTTCTTCTCTATACCCAAAACAGAGCAATAGCTCCTCTTTGCAGAGTGATCAATCATGTTATCAGCTTCATCAGAGCCTCAAAGACCCTTTGAAGCAACAAAAGAGAGATGAATCACAGAAGATCGTTCATCGATTCTTCGATGAATGGCCTCCAAAAGAAAGAGGATCATGGCTTGATTTCGATGATAAATCGTCAAATACTAGCTCAGTTTCCACCACTCGGCTCTCAATTTCCATTCCCACATCTTCCAACGACTTACCCATTTTCAGATCCAAAAACCCTTAG 984 42.58 MFPFTSTQWQELEHQALIFKYMVSGIPIPPDLLFGIKRSTLDSTFTSKLFPHHPQHVGWNYLQMSLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVDVLKTTATNDLNHHSNPTFSSLKNNSSLLSYRPFPGHRISSTPNGNGISTKDTNTLLLLEPGSYSDRNPDYRSRYTYGLKEEVDEHVFFSQEPSEATGRADYSASSIANSLQLTPLTMSCSSLYPKQSNSSSLQSDQSCYQLHQSLKDPLKQQKRDESQKIVHRFFDEWPPKERGSWLDFDDKSSNTSSVSTTRLSISIPTSSNDLPIFRSKNP 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 33894248 33895391 + CePI673135_03g015780.1 Cec03g1578 199202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec03g1578 327 ProSiteProfiles QLQ domain profile. 3 38 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cec03g1578 327 Pfam QLQ 3 36 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cec03g1578 327 ProSiteProfiles WRC domain profile. 71 115 IPR014977 -
Cec03g1578 327 Pfam WRC 72 113 IPR014977 -
Cec03g1578 327 PANTHER GROWTH-REGULATING FACTOR 5 3 315 IPR031137 GO:0005634(InterPro)|GO:0006351(InterPro)|GO:0032502(InterPro)
Cec03g1578 327 SMART QLQ_2 2 38 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec03g1578 Cec-Chr3:33894248 Cec08g1730 Cec-Chr8:28421174 9.60E-33 dispersed
Cec02g0797 Cec-Chr2:9422347 Cec03g1578 Cec-Chr3:33894248 8.30E-48 transposed
Cec10g1941 Cec-Chr10:34206819 Cec03g1578 Cec-Chr3:33894248 9.70E-30 transposed
Cec11g0158 Cec-Chr11:1805634 Cec03g1578 Cec-Chr3:33894248 2.80E-79 wgd
Cec03g1578 Cec-Chr3:33894248 Cec07g1527 Cec-Chr7:30888982 8.10E-56 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29247 PF08879 WRC 1.10E-20 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec03g1578 - - - 0.0