Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec03g1583 ATGGCGGATAAGAAAGGAATGGAACAGCTTGTTTTACGGATTTTGGAGGGTGAAGAAGGAGTTGATGCAAGTAAAGATCTCAATAAACCCTCAGTTGGTTCTTTCCCTGATTTTGATCTAAAAGAAACTCGGAGTTTTAGGTGTACAATTCCACAATCCGTAGTTGGGAGTTCTCCTTCACCTGAGATTTCCAGAATGACTCCCCTTAAACCTCCAAAAATTCCAGGCGAAACGGCGATTCGGCGCCCATCATTTGCTCGTTCATCATTTTCGAAGCCAAAGTCAAGGCTAATAGAGTCACCTTGTCCTGATGGTGCATATTTAGCAGAAGAAAAGGCTCAAGCAAAATCGACAATCTATAGCTCTTCTAAGGTGGACTCCCCAGCTAAGATAACCACAGTGACTAGTCCAAAAGAAGCTTTGAAGTCGGCCCCGATAACTCCAAAAACACCATTGATCGGAACTACTGGAAGTGAGGAGGAAGATGATGAAGAAGTTTACAAAACTGCAGAACTGAAAGTGAAAGAAAGATCAGGGAAGAAATTGAAAAGAACAGTTTTAATTGAATGGGTTGCATTTTTGTGCTTAACAGGTTGTTTAATTGCTAGCTTAACAATAGACAAGTTGCTGACTAAAGAGATTTGGGGATTAGGACTATGGAAATGGTGTGTTCTGGTATTAATTATTTTCTGCGGTCGTTTGTTTTCGCAATGGTTTATCAATTGTCTGGTTTTCTTGATTGAAAGAAACTTTCTACTTAAAAGAAAGGTTCTTTATTTTGTCTATGGGCTTCGGAAGAGTGTTATAATTTTTATTTGGCTGGCTTTGGTTCTTCTAGCCTGGGGTTTATTATTTGATCAAAGCAGCAAGAGATCTAAGAAAGGCAATGAGATTCTGAATTATGTTACACGAGCTCTTGGTGCTTCTCTCATTGGAGCAGGTCTATGGCTGGTGAAAACTTTGTTGGTGAAGACACTAGCTGCTTCTTTTCAATGCGCTAGATTCTTCGATCGGATTCAAGAATCAATCTTCCATCAATATATCCTGCGCATCCTATCAGGACCTCCACTCATGGAGATGGCGGAGAGGGTTGGGAGAGCGGCAAGCACAGGGCAGTTGAGTTTCAGGCATTTGAAGAAAGAAAGTGATGGTGGGAATGAAGGGAAGGAAGAGGTGATTGATGTAGATAAACTCAAAAAGATGAAGCAAGAAAAAATCTCTGCTTGGACCATGAGAGGGCTAATCAATGTTATAAGGAGTTCAGGGCTGTCCACCATCTCTAATACAATAGAGAATTTTAAAGAGGAAGAGGTTGAGCAAAAAGATAAGGAGATTAACAGTGAATGGGAAGCAAGGGCTGCAGCTTACCAAATTTTCAGAAATGTTGCGAAACCGGGTAGCAAGTATATTGATGAAGATGACCTCTTTCGTTTTATGAGTAAGGAGGAAATTGATAATGTGCTGCCATTGTTTGAAGGAGGAGTTGAGACTGGGAAGATAAAGCGAAAAACCCTGAAGAATTGGCTGGTGAATGTTTACGTTGAGCGCAAGTCGTTGGCTCACTCATTGAATGACACCAAGACTGCCATAGAGGAGCTAAACAAGCTTGCCTCTGCAATTATACTGATTGTGATTATCATTGAATGGCTACTTCTGATGGGTTTCTTAACGACGCAAGTACTCGTCTTCATCTCATCACAGCTTCTGCTCGTGGTTTTCATGTTTGGTAACACTGCCAGAACTGTATTCGAAGCCATCATATTCGTATTCGTGATGCATCCATTTGACGTGGGGGATCGTTGTGTCGTAGATGGTGTGCAGATGGTTGTTGAAGAAATGAACATTTTAACCACAATTTTCTTGAGATATGACAATGAGAAGATCTTCTATCCAAATTCTGTTCTAGCCACCAAACCCATCAGTAACTACTACCGGAGCCCCGAAATGGGTGATTCGATCGAATTTTCTGTTGACTTTTCCACTTCAATTGAGAGCATTGGAGCTCTAAAAGCAAGAATAAAAACATACATAGAAAGCAAACCTCAGTTCTGGCGTCCAAACCACAGTGTCGTAGTGAAGGAGATCGAGAATGTCAACAAGATGAAACTAGCTCTATGTGTCAATCACACCATAAACTTTCAGAACTACGGTGACAAGAGCAGTCGAAGATCGGATTTAGTCTTCGAGCTGAAGAGAATTCTCGAAGATCTCGGTATCAAGTATCATCTGCTACCTCAAGAAGTTCATCTCAACTATGTGGGTTCAGCAGCTCCAGTGGTTCCACCCTCTCAAAGATGA 2298 41.3 MADKKGMEQLVLRILEGEEGVDASKDLNKPSVGSFPDFDLKETRSFRCTIPQSVVGSSPSPEISRMTPLKPPKIPGETAIRRPSFARSSFSKPKSRLIESPCPDGAYLAEEKAQAKSTIYSSSKVDSPAKITTVTSPKEALKSAPITPKTPLIGTTGSEEEDDEEVYKTAELKVKERSGKKLKRTVLIEWVAFLCLTGCLIASLTIDKLLTKEIWGLGLWKWCVLVLIIFCGRLFSQWFINCLVFLIERNFLLKRKVLYFVYGLRKSVIIFIWLALVLLAWGLLFDQSSKRSKKGNEILNYVTRALGASLIGAGLWLVKTLLVKTLAASFQCARFFDRIQESIFHQYILRILSGPPLMEMAERVGRAASTGQLSFRHLKKESDGGNEGKEEVIDVDKLKKMKQEKISAWTMRGLINVIRSSGLSTISNTIENFKEEEVEQKDKEINSEWEARAAAYQIFRNVAKPGSKYIDEDDLFRFMSKEEIDNVLPLFEGGVETGKIKRKTLKNWLVNVYVERKSLAHSLNDTKTAIEELNKLASAIILIVIIIEWLLLMGFLTTQVLVFISSQLLLVVFMFGNTARTVFEAIIFVFVMHPFDVGDRCVVDGVQMVVEEMNILTTIFLRYDNEKIFYPNSVLATKPISNYYRSPEMGDSIEFSVDFSTSIESIGALKARIKTYIESKPQFWRPNHSVVVKEIENVNKMKLALCVNHTINFQNYGDKSSRRSDLVFELKRILEDLGIKYHLLPQEVHLNYVGSAAPVVPPSQR 765
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 33952431 33955171 - CePI673135_03g015830.1 Cec03g1583 199207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec03g1583 765 Gene3D - 594 643 IPR023408 -
Cec03g1583 765 Pfam Mechanosensitive ion channel, beta-domain 587 644 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
Cec03g1583 765 SUPERFAMILY Sm-like ribonucleoproteins 584 643 IPR010920 -
Cec03g1583 765 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 73 753 IPR016688 GO:0005886(PANTHER)|GO:0006820(PANTHER)|GO:0008381(PANTHER)|GO:0050982(PANTHER)
Cec03g1583 765 MobiDBLite consensus disorder prediction 51 97 - -
Cec03g1583 765 FunFam Predicted mechanosensitive ion channel 594 643 - -
Cec03g1583 765 PIRSF Memb_At2g17000 26 764 IPR016688 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g1160 Cec-Chr2:27111127 Cec03g1583 Cec-Chr3:33952431 4.60E-149 dispersed
Cec03g1583 Cec-Chr3:33952431 Cec05g1740 Cec-Chr5:28950922 4.00E-183 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec03g1583 K22048 - csv:101209209 1363.98