Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec03g1649 ATGATTATCAGTGAACGCCACCGCCCTGGTCCGGTGGTTCACATCACTCCATTAACGATACCAGAGGAACCTCCTGCAAGCGAGACGCGGTTTGCCTTTCCTCTGAGTGGAATCTCGGTGAGTTCTGATGGCAATGCCAATGGCGGTGATTATTCTCCTTATTATCTCCAGGAAGCCCTAGCGGCACTTCAGCGATATACGAACGAGTCGGAGATTGAATCTGATTCGGAGTTGTCCGGACGGGAATCGGACGTTCCAGTGGATGCTTATTCTTGCGATCATTTTCGGATTTTTGAGTTCAAGGTGAGAAAGTGTACGCGTGGACGGTCTCATGATTGGACGGAGTGTCCGTACGCTCATCCAGGCGAGAAGGCTCGCCGGCGAGATCCGAGGAAGTATCATTACTCTGGTACGGCGTGCCCTGACTTTCGAAAGGGTAGCTGTAAGAAAGGCGATTCGTGCGAGTTTGCGCATGGTGTTTTTGAGTGTTGGCTTCATCCTGCTCGTTACAGGACTCAGCCATGTAAGGACGGAACCAACTGTCGAAGAAGAGTCTGTTTCTTCGCCCATACTCCTGAACAACTTAGGGTTTTGCCTCAGCAGAGCCCGAGAAGCGCGAACTCGCCTGAGTCGTATGATGAATCTCCACTTCGGCAGTCTTTGGATGGATCCTGTGCTAAATCGCTGCCGTATCTGTCTTCTCCGGTGTCTGTTTCACCAACAGCGACTCCGGTGGATTCCCCACCGTTATCGCCCATGACTCGGTCTCTCGGCCGGTCCCTTGGCTCGAGTTCCATCAATGAAATGGTCGCATCTCTCCGGAACTTGCATCTAAGCAAGGTCAAATCCCTGCCATCTTCCTGGAATGTTCAAATTGGATCTCCTGGTTACCCGTCTCGAGTCTGCCATGGATTTTGTAGCCTTCCAACAACACCAACTCGGGCTCCAACTGGTCATGGAGTTGGACTGCTCGACTTCTCGGAGCATGGATTTGAGGAGGAACCGGCGATGGAGCGAGTTGAATCAGGAAGGGAGCTGAGAGCGAAGATGCTGGAGAAACTGAGCAAGGAAAATTCTCTGGACCTGGCTGATTCAAATCCTTCAGCCTGCACACCAGATGTTGGATGGATATCAGAGCTGGTGAAGTGA 1149 51.87 MIISERHRPGPVVHITPLTIPEEPPASETRFAFPLSGISVSSDGNANGGDYSPYYLQEALAALQRYTNESEIESDSELSGRESDVPVDAYSCDHFRIFEFKVRKCTRGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDFRKGSCKKGDSCEFAHGVFECWLHPARYRTQPCKDGTNCRRRVCFFAHTPEQLRVLPQQSPRSANSPESYDESPLRQSLDGSCAKSLPYLSSPVSVSPTATPVDSPPLSPMTRSLGRSLGSSSINEMVASLRNLHLSKVKSLPSSWNVQIGSPGYPSRVCHGFCSLPTTPTRAPTGHGVGLLDFSEHGFEEEPAMERVESGRELRAKMLEKLSKENSLDLADSNPSACTPDVGWISELVK 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 34662962 34664110 + CePI673135_03g016490.1 Cec03g1649 199273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec03g1649 382 PANTHER UNKEMPT FAMILY MEMBER 51 382 IPR045234 -
Cec03g1649 382 SMART c3hfinal6 134 160 IPR000571 GO:0046872(InterPro)
Cec03g1649 382 SMART c3hfinal6 169 192 IPR000571 GO:0046872(InterPro)
Cec03g1649 382 FunFam Zinc finger CCCH domain-containing protein 66 92 160 - -
Cec03g1649 382 ProSiteProfiles Zinc finger C3H1-type profile. 135 161 IPR000571 GO:0046872(InterPro)
Cec03g1649 382 MobiDBLite consensus disorder prediction 197 221 - -
Cec03g1649 382 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 138 159 IPR000571 GO:0046872(InterPro)
Cec03g1649 382 SUPERFAMILY CCCH zinc finger 133 163 IPR036855 GO:0046872(InterPro)
Cec03g1649 382 Gene3D - 134 198 - -
Cec03g1649 382 MobiDBLite consensus disorder prediction 236 259 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g2051 Cec-Chr2:38237698 Cec03g1649 Cec-Chr3:34662962 9.70E-51 dispersed
Cec03g1649 Cec-Chr3:34662962 Cec10g1729 Cec-Chr10:31956179 4.80E-52 dispersed
Cec07g0293 Cec-Chr7:2865718 Cec03g1649 Cec-Chr3:34662962 1.70E-57 transposed
Cec07g1815 Cec-Chr7:33863386 Cec03g1649 Cec-Chr3:34662962 3.80E-46 transposed
Cec11g0201 Cec-Chr11:2165280 Cec03g1649 Cec-Chr3:34662962 1.70E-129 wgd
Cec03g1649 Cec-Chr3:34662962 Cec05g1948 Cec-Chr5:31562905 3.70E-92 wgd
Cec03g1649 Cec-Chr3:34662962 Cec08g1743 Cec-Chr8:28576288 5.70E-69 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29253 PF00642 zf-CCCH 1.70E-06 CL0537 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec03g1649 - - - 0.0