Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec03g1702 ATGGCCGGAATCCCCTCTGAGGGGTTGGGGGATGATTTTTTCGAGCAGATTCTGGCGGTGCCGCCGTCTTACGGCGGCGCAGGTGGCGGTGATATGGTGTCTATGCCTATGGGACTACAACTTGGGTCCGGCGGCGGCGGCGGAGGAATGGGTATGCCTTTGGGATTGAATTTAGAACAGGGGTTTTTGAGACAAGAGAGATACAGAGAAGAGCTTGATGGCCACATTAATAATACCACTAATAATGCTTCTTCTTCCTCAACTGCTTCTTCAGGAATCAATGAGAGAGATTCTTCGATGCAGCACATGACAAACTTGTTTCCAACCTTTGGACATTTGCAGACTCAACAACTCCGCCCACCGCCACCGTTACATCTCCACCAGCCTTTTCACAATCAAACAACTCCCATGACGGTTTCTGCTGTACCACAACCACCTCAAGTTCGACCAAGAGTTCGAGCAAGACGAGGGCAAGCGACCGATCCTCACAGTATTGCAGAAAGGTTGCGTCGAGAAAGAATTGCAGAAAGAATGAAGGCCTTGCAGGAGTTAGTTCCTAGTTGCAATAAGACTGATCGAGCGGCAATGCTCGATGAAATTGTTGATTATGTAAAGTTTCTTAGGCTTCAAGTTAAGGTTTTAAGCATGAGTAGACTAGGCGGGGCAGGTGCGGTGGCTCAACTTGTGGCCGATGTGCCCCTATCGTCAGTCGAGGGAGAAGGCATTGAGAGTGGCAACAATCAGCAAGCATGGGAAAAGTGGTCAAGTGATGGAACAGAGCAACAAGTAGCCAAATTGATGGAAGAAGATGTGGGAGCTGCCATGCAATTCCTACAATCTAAAGCTCTATGCATTATGCCTATCTCATTAGCCTCAGCAATTTTCAGGACACACCAAGCAGACCCACAAATCTTAGTCAAGCCAGAAATGAACACTCCCTAG 942 48.3 MAGIPSEGLGDDFFEQILAVPPSYGGAGGGDMVSMPMGLQLGSGGGGGGMGMPLGLNLEQGFLRQERYREELDGHINNTTNNASSSSTASSGINERDSSMQHMTNLFPTFGHLQTQQLRPPPPLHLHQPFHNQTTPMTVSAVPQPPQVRPRVRARRGQATDPHSIAERLRRERIAERMKALQELVPSCNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAQLVADVPLSSVEGEGIESGNNQQAWEKWSSDGTEQQVAKLMEEDVGAAMQFLQSKALCIMPISLASAIFRTHQADPQILVKPEMNTP 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 35268284 35275518 - CePI673135_03g017020.1 Cec03g1702 199326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec03g1702 313 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 158 207 IPR011598 GO:0046983(InterPro)
Cec03g1702 313 FunFam Basic helix-loop-helix transcription factor 153 215 - -
Cec03g1702 313 MobiDBLite consensus disorder prediction 75 95 - -
Cec03g1702 313 Pfam Helix-loop-helix DNA-binding domain 163 208 IPR011598 GO:0046983(InterPro)
Cec03g1702 313 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 156 217 IPR036638 GO:0046983(InterPro)
Cec03g1702 313 Gene3D - 151 208 IPR036638 GO:0046983(InterPro)
Cec03g1702 313 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 77 292 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Cec03g1702 313 SMART finulus 164 213 IPR011598 GO:0046983(InterPro)
Cec03g1702 313 MobiDBLite consensus disorder prediction 137 162 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec03g1702 Cec-Chr3:35268284 Cec09g0720 Cec-Chr9:6507935 2.80E-74 dispersed
Cec03g1702 Cec-Chr3:35268284 Cec02g1786 Cec-Chr2:35711070 4.40E-43 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29258 PF00010 HLH 6.80E-08 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec03g1702 - - - 0.0