Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cec03g1707 | ATGCCGCCTTTCCTTCATTTGCCTTGTTCCCCTCTCAAAAGGTTCATTTCACACACCTCAAAATCCTCCATAAACAATGCCCTGTTCAACCCACAACCCAATCTTCAACCATTTTTCTCATTTCTCCAAGAATTTCCCCATAACATTTTGTCGGTCAAATCCATACACGCCCAGATTATTATCACAAACGCCATATCTGGGGACCAAATTTTGGTTGCAAAGCTTGTTCGGGCGTACTCAGGCTTGGGTTGTTTGGAAAATGCACGGAAAGTGTTTGATAAATTTCCTCAACCAAAAACTCCTCTTTGCAATGCCATGGTTAATGGGTATCTGCAAAATGAGCATTATAATGACAGTATCGAGCTGCTTAAGATGATGAGTCGATGTGATTTGGAATTTGATAGTTATACTTGTAATTTTGCTCTTAAGGCATGCATGTCCTTATCGGATTATGAAATGGGGATGGAAGTGATTAGATTAGCTGTGTGTAAGGGGTTGGCTAGAGGTCGGTTTTTGGGAAGTTCTATTTTGAATTTTTTGGTGAAAACTGGTGATATTATGAGTGCACATATTTTTTTTCATCAAATGGTTGAGAAAGATGTTGTTTGTTGGAATGTGATGATTGGTGGGTTCATGCAAGAAGGCTTGTTTAGTGAAGGTTATAATGTGTTCCTTGATATGCTTTATAATAAAATTGAGCCCAGTGCTGTGACCATGACAATCTTGATTCAATCCTGTGGGGAGATGAGGAATTTAAAGTTTGGAAAATGTATACATAGCTATGTTCTTGGATTTGGAATGAGTAGTGATACAAGGGTGCTTACCTCATTGATTGATATGTATTGTAAATCAGGTGACGTCGAAAGTGCTCGATGGATTTTCGATACCATGCCCTTGAGGAACTTGGTCTCTTGGAATGTTATGATTTCGGGATATGTTCAAAATGGTTTTCTTGTTGAAACTTTATATCTCTCTCGGATGTTGGTTATGAATGATGGAGGTTTCGATACAGGTACTGCTGTTAGCCTCATCCAGCTGTGTTCTCGCACGGCTGATTTGGATGGCGGCAAGATTCTTCATGGTTGCATCTATCGAAGGGGACTTGATTTGAATTTGGTTTTGTCTACTGCAATTGTTGATCTATATGCTAAATGTGGATCCCTGGCCTATGCATCTTCTGTTTTTGAAAGAATGAAAAATAAGAATGTGATTTCATGGACTGCCATGCTTGTGGGACTGGCACAGAATGGGCATGCTAGAGATGCCTTGAAGTTATTTTATCGGATGCAAAATGAGAGAGTTACTTTCAATGCCCTCACCTTAGTTAGTTTAGTCCAATGCTGCACGCTCCTAGGCTTGTTACGTGAAGGGAGATGTGTGCATGCTATCTTAACTCGATTTCATTTTGCTTCCGAAGTTGTCGTTATAACAGCCCTCGTTGATATGTATGCAAAATGCAGCAAAATAAACTCAGCTGAGAAGGTATTCAAGTATGGTTTTACGCCTAAGGATGTGATATTATATAATGCTATGATTTCGGGCTATGGAATGCACGGTCTTGGGCGTAAAGCACTGTGCGTCTACCATCAAATGAATCTAGAAGGACTTCAGCCAAACGAGAGTACCTTTGTTTCTCTGCTATCTGCTTGTAGCCATTCAGGCCTGGTGGAAGAGGGGATCTCTTTGTTTCAAAATATGGAGAAAGATCATGACGTAACACCTACCGATAAACTTTACGCTTGTTTTGTAGATCTTCTATGTCGAGCAGGTCGCCTTCGGCAAGCTGAGGAATTAATCAATCAAATGCCTTTCATGCCAACCAGTGGCATACTTGAAACTCTGCTGAATGGATGTCTTTTGCACAAGGACATTGAATTAGGTGTAAAATTTGCTGACAGATCACTCTCCTTGGAGTCTAGAAATCCAAGCATCTACATTACCTTGTCAAATATATATGCCGAAGCAAGTCAATGGGATTCGGTAAAGTATGTTCGAGATCTTCGCTCTTCCTATTGGCTCTTTCCACTTACTCGCAGACAGCCCAACAGAGCCCACAACAACCACGACACTCAACTGCAAACAATCCACAATTATGATGATCCCAATTTCCCTGTTCTGCTTTCCGGTCGATCGTTTTCTTTGATGGGGTTTTCATGTTTCTTTGTTCTTGTGAGAAAATCTATGAGTGAAGTGCTTCTCCGAGAGGCGTCTTCTAGAGGTGTAGAAGCCCCTGTAGATAAGGGGAAGAGGAATCAAATTACTGAGTCTCGTGTCCAGGGCGAGAGTGTTCAGGAGAAAGAAGTAGAACGTGTGAGTGCTAATGTAGAGGAGCATGTAAACGTGAACAAGGAAGAGGAGCAGAAGGCTGATGGGGTTCAGGAGCGCCCACGAGCAGAACGGAGAAAGTCGAGGAAGGTTCCGAGGCCAACTAACTTGCCAAACCATTCCCAGGGAGAGCAAGTTGCTGCTGGATGGCCTTCTTGGCTCACGGCAGTTTGTGGAGAGGCTCTCAATGGTTGGATTCCTCGGAAGGCTGATACATTTGAAAAGATTGATAAGATTGGACAAGGAACGTATAGCAATGTGTATAAAGCTAAAGATATACTTACAGGTAAAATTGTTGCACTGAAGAAGGTTCGGTTTGACAATTTGGAACCTGAAAGTGTGAAATTTATGGCTAGAGAGATTCTTATCCTTAGGAGATTAAATCATAACAATGTTGTGAAATTGGAGGGGTTGGTTACATCACGGATGTCTTGTAGTTTATACTTGGTGTTTGAGTACATGGAACATGATTTAGCAGGTCTTGCTGCAAATCCATCGATCAAATTTACGGAATCTCAGGTTAAATGTTTCATGCAACAACTGCTATCTGGACTGGAACACTGTCATAATCGACGGGTGCTTCACCGTGACATTAAAGGATCTAATCTTCTCATTGATAGTGGGGGAGTGCTTAAAATTGCCGACTTTGGATTGGCTTCTTTCTTTGATCCGAATCACAAGCACCCTATGACTAGTCGGGTGGTTACCTTATGGTATCGACCTCCTGAACTTCTTCTTGGAGCAACTGATTATGGAGTAGGTGTAGACCTCTGGAGTGCTGGGTGTATACTGGCTGAGTTATTAGCTGGGAGGCCTATTATGCCTGGCCGTACAGAGGTGGAGCAACTACACAAGATATACAAGCTTTGTGGCTCCCCTTCAGATGAATATTGGAAAAGAGCAAAACTTCCAAATGCAACTTTATTTAAGCCCAGAGAACCTTATAAAAGATGTATAAAGGAGACATTTAAAGATTTCCCCCCATCTTCTCTGCCCCTTATAGAAACGCTTCTTGCAATTGATCCAGCAGAACGAAAGACAGCAACAGATGCATTAAATAGCGAGTTCTTCATGACAGAACCTTTAGCCTGCAAACCCTCCAACCTCCCGAAATATCCTCCCAGTAAGGAGATGGATGCTAGAAGACGGGATGATGAAGCTCGGAGACTAAGAGCAGCTAGTAAAGCCCAGGGAGATGGAGCGAAGAAAACACGCACACGTGTTAGGGCTATTCCAGCTCCCGAAGCCAATGCCGAAATACAAACAAATATTGACAGAAGGCGCTTAATTACACATGCAAATGCAAAGAGCAAAAGTGAAAAGTTTCCCCCACCACATCAGGATGGAGCGCTTGGCTTTACGCTAGGATATTCACGTCATATTGACCCATCTGGTGTTCCTCCTGACATACCATTCAGCTCGACGCTGTTCACTTATTCTAAGGAACCAGTCCAAGCCTGGTCTGGTCCACTAGTCCCTGGTGCTGGCACTGAGGCTCCTAGGCAGAAGAAGCATGTAGGAGGTGTATCATCAAATTCTTCCCACGGTTCATCCAAATTGGTAATCAATCAGCCTGGCCTACTCTCAGCTGAGGAGATCATGAATTGA | 3933 | 42.64 | MPPFLHLPCSPLKRFISHTSKSSINNALFNPQPNLQPFFSFLQEFPHNILSVKSIHAQIIITNAISGDQILVAKLVRAYSGLGCLENARKVFDKFPQPKTPLCNAMVNGYLQNEHYNDSIELLKMMSRCDLEFDSYTCNFALKACMSLSDYEMGMEVIRLAVCKGLARGRFLGSSILNFLVKTGDIMSAHIFFHQMVEKDVVCWNVMIGGFMQEGLFSEGYNVFLDMLYNKIEPSAVTMTILIQSCGEMRNLKFGKCIHSYVLGFGMSSDTRVLTSLIDMYCKSGDVESARWIFDTMPLRNLVSWNVMISGYVQNGFLVETLYLSRMLVMNDGGFDTGTAVSLIQLCSRTADLDGGKILHGCIYRRGLDLNLVLSTAIVDLYAKCGSLAYASSVFERMKNKNVISWTAMLVGLAQNGHARDALKLFYRMQNERVTFNALTLVSLVQCCTLLGLLREGRCVHAILTRFHFASEVVVITALVDMYAKCSKINSAEKVFKYGFTPKDVILYNAMISGYGMHGLGRKALCVYHQMNLEGLQPNESTFVSLLSACSHSGLVEEGISLFQNMEKDHDVTPTDKLYACFVDLLCRAGRLRQAEELINQMPFMPTSGILETLLNGCLLHKDIELGVKFADRSLSLESRNPSIYITLSNIYAEASQWDSVKYVRDLRSSYWLFPLTRRQPNRAHNNHDTQLQTIHNYDDPNFPVLLSGRSFSLMGFSCFFVLVRKSMSEVLLREASSRGVEAPVDKGKRNQITESRVQGESVQEKEVERVSANVEEHVNVNKEEEQKADGVQERPRAERRKSRKVPRPTNLPNHSQGEQVAAGWPSWLTAVCGEALNGWIPRKADTFEKIDKIGQGTYSNVYKAKDILTGKIVALKKVRFDNLEPESVKFMAREILILRRLNHNNVVKLEGLVTSRMSCSLYLVFEYMEHDLAGLAANPSIKFTESQVKCFMQQLLSGLEHCHNRRVLHRDIKGSNLLIDSGGVLKIADFGLASFFDPNHKHPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGRPIMPGRTEVEQLHKIYKLCGSPSDEYWKRAKLPNATLFKPREPYKRCIKETFKDFPPSSLPLIETLLAIDPAERKTATDALNSEFFMTEPLACKPSNLPKYPPSKEMDARRRDDEARRLRAASKAQGDGAKKTRTRVRAIPAPEANAEIQTNIDRRRLITHANAKSKSEKFPPPHQDGALGFTLGYSRHIDPSGVPPDIPFSSTLFTYSKEPVQAWSGPLVPGAGTEAPRQKKHVGGVSSNSSHGSSKLVINQPGLLSAEEIMN | 1310 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 35313914 | 35332184 | + | CePI673135_03g017070.1 | Cec03g1707 | 199331 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cec03g1707 | 1310 | MobiDBLite | consensus disorder prediction | 1268 | 1295 | - | - | |
Cec03g1707 | 1310 | Pfam | PPR repeat family | 503 | 551 | IPR002885 | - | |
Cec03g1707 | 1310 | Pfam | PPR repeat family | 199 | 246 | IPR002885 | - | |
Cec03g1707 | 1310 | FunFam | Pentatricopeptide repeat-containing protein, chloroplastic | 474 | 671 | - | - | |
Cec03g1707 | 1310 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 402 | 436 | IPR002885 | - | |
Cec03g1707 | 1310 | Coils | Coil | 768 | 795 | - | - | |
Cec03g1707 | 1310 | MobiDBLite | consensus disorder prediction | 740 | 800 | - | - | |
Cec03g1707 | 1310 | Gene3D | Tetratricopeptide repeat domain | 253 | 358 | IPR011990 | GO:0005515(InterPro) | |
Cec03g1707 | 1310 | Gene3D | Phosphorylase Kinase; domain 1 | 835 | 930 | - | - | |
Cec03g1707 | 1310 | ProSiteProfiles | Protein kinase domain profile. | 848 | 1132 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cec03g1707 | 1310 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 968 | 980 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cec03g1707 | 1310 | SMART | serkin_6 | 848 | 1132 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cec03g1707 | 1310 | MobiDBLite | consensus disorder prediction | 737 | 820 | - | - | |
Cec03g1707 | 1310 | Pfam | E motif | 621 | 666 | IPR046848 | - | |
Cec03g1707 | 1310 | Gene3D | Tetratricopeptide repeat domain | 168 | 252 | IPR011990 | GO:0005515(InterPro) | |
Cec03g1707 | 1310 | Gene3D | Tetratricopeptide repeat domain | 51 | 167 | IPR011990 | GO:0005515(InterPro) | |
Cec03g1707 | 1310 | Gene3D | Tetratricopeptide repeat domain | 555 | 663 | IPR011990 | GO:0005515(InterPro) | |
Cec03g1707 | 1310 | Gene3D | Tetratricopeptide repeat domain | 453 | 554 | IPR011990 | GO:0005515(InterPro) | |
Cec03g1707 | 1310 | Gene3D | Tetratricopeptide repeat domain | 359 | 452 | IPR011990 | GO:0005515(InterPro) | |
Cec03g1707 | 1310 | FunFam | Pentatricopeptide repeat-containing protein mitochondrial | 354 | 459 | - | - | |
Cec03g1707 | 1310 | MobiDBLite | consensus disorder prediction | 1281 | 1295 | - | - | |
Cec03g1707 | 1310 | PANTHER | OS07G0578800 PROTEIN-RELATED | 436 | 667 | IPR045215 | GO:0003723(PANTHER)|GO:0003723(InterPro)|GO:0009451(InterPro)|GO:0009451(PANTHER)|GO:0043231(PANTHER) | |
Cec03g1707 | 1310 | Pfam | Protein kinase domain | 848 | 1132 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cec03g1707 | 1310 | NCBIfam | pentatricopeptide repeat | 507 | 540 | IPR002885 | - | |
Cec03g1707 | 1310 | NCBIfam | pentatricopeptide repeat | 404 | 435 | IPR002885 | - | |
Cec03g1707 | 1310 | NCBIfam | pentatricopeptide repeat | 542 | 575 | IPR002885 | - | |
Cec03g1707 | 1310 | NCBIfam | pentatricopeptide repeat | 202 | 235 | IPR002885 | - | |
Cec03g1707 | 1310 | FunFam | probable serine/threonine-protein kinase At1g54610 | 931 | 1172 | - | - | |
Cec03g1707 | 1310 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 200 | 234 | IPR002885 | - | |
Cec03g1707 | 1310 | MobiDBLite | consensus disorder prediction | 1150 | 1181 | - | - | |
Cec03g1707 | 1310 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 504 | 538 | IPR002885 | - | |
Cec03g1707 | 1310 | MobiDBLite | consensus disorder prediction | 1142 | 1181 | - | - | |
Cec03g1707 | 1310 | FunFam | probable serine/threonine-protein kinase At1g54610 | 835 | 930 | - | - | |
Cec03g1707 | 1310 | CDD | STKc_CDK9_like | 848 | 1132 | - | - | |
Cec03g1707 | 1310 | SUPERFAMILY | Protein kinase-like (PK-like) | 843 | 1136 | IPR011009 | - | |
Cec03g1707 | 1310 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 270 | 304 | IPR002885 | - | |
Cec03g1707 | 1310 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 539 | 569 | IPR002885 | - | |
Cec03g1707 | 1310 | ProSitePatterns | Protein kinases ATP-binding region signature. | 854 | 877 | IPR017441 | GO:0005524(InterPro) | |
Cec03g1707 | 1310 | Pfam | PPR repeat | 376 | 403 | IPR002885 | - | |
Cec03g1707 | 1310 | Pfam | PPR repeat | 303 | 320 | IPR002885 | - | |
Cec03g1707 | 1310 | Pfam | PPR repeat | 103 | 130 | IPR002885 | - | |
Cec03g1707 | 1310 | Pfam | PPR repeat | 581 | 602 | IPR002885 | - | |
Cec03g1707 | 1310 | Pfam | PPR repeat | 404 | 433 | IPR002885 | - | |
Cec03g1707 | 1310 | Pfam | PPR repeat | 275 | 300 | IPR002885 | - | |
Cec03g1707 | 1310 | Gene3D | Transferase(Phosphotransferase) domain 1 | 931 | 1171 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cec03g0381 | Cec-Chr3:4241619 | Cec03g1707 | Cec-Chr3:35313914 | 4.30E-190 | dispersed | |
Cec03g1707 | Cec-Chr3:35313914 | Cec05g0684 | Cec-Chr5:5607655 | 1.80E-231 | dispersed | |
Cec11g1943 | Cec-Chr11:33537186 | Cec03g1707 | Cec-Chr3:35313914 | 2.20E-47 | dispersed | |
Cec02g1707 | Cec-Chr2:34799843 | Cec03g1707 | Cec-Chr3:35313914 | 8.20E-242 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
71866 | PF00069 | Pkinase | 2.70E-67 | CL0016 | Cec | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cec03g1707 | K08819 | - | csv:101215893 | 1079.32 |