Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec03g1707 ATGCCGCCTTTCCTTCATTTGCCTTGTTCCCCTCTCAAAAGGTTCATTTCACACACCTCAAAATCCTCCATAAACAATGCCCTGTTCAACCCACAACCCAATCTTCAACCATTTTTCTCATTTCTCCAAGAATTTCCCCATAACATTTTGTCGGTCAAATCCATACACGCCCAGATTATTATCACAAACGCCATATCTGGGGACCAAATTTTGGTTGCAAAGCTTGTTCGGGCGTACTCAGGCTTGGGTTGTTTGGAAAATGCACGGAAAGTGTTTGATAAATTTCCTCAACCAAAAACTCCTCTTTGCAATGCCATGGTTAATGGGTATCTGCAAAATGAGCATTATAATGACAGTATCGAGCTGCTTAAGATGATGAGTCGATGTGATTTGGAATTTGATAGTTATACTTGTAATTTTGCTCTTAAGGCATGCATGTCCTTATCGGATTATGAAATGGGGATGGAAGTGATTAGATTAGCTGTGTGTAAGGGGTTGGCTAGAGGTCGGTTTTTGGGAAGTTCTATTTTGAATTTTTTGGTGAAAACTGGTGATATTATGAGTGCACATATTTTTTTTCATCAAATGGTTGAGAAAGATGTTGTTTGTTGGAATGTGATGATTGGTGGGTTCATGCAAGAAGGCTTGTTTAGTGAAGGTTATAATGTGTTCCTTGATATGCTTTATAATAAAATTGAGCCCAGTGCTGTGACCATGACAATCTTGATTCAATCCTGTGGGGAGATGAGGAATTTAAAGTTTGGAAAATGTATACATAGCTATGTTCTTGGATTTGGAATGAGTAGTGATACAAGGGTGCTTACCTCATTGATTGATATGTATTGTAAATCAGGTGACGTCGAAAGTGCTCGATGGATTTTCGATACCATGCCCTTGAGGAACTTGGTCTCTTGGAATGTTATGATTTCGGGATATGTTCAAAATGGTTTTCTTGTTGAAACTTTATATCTCTCTCGGATGTTGGTTATGAATGATGGAGGTTTCGATACAGGTACTGCTGTTAGCCTCATCCAGCTGTGTTCTCGCACGGCTGATTTGGATGGCGGCAAGATTCTTCATGGTTGCATCTATCGAAGGGGACTTGATTTGAATTTGGTTTTGTCTACTGCAATTGTTGATCTATATGCTAAATGTGGATCCCTGGCCTATGCATCTTCTGTTTTTGAAAGAATGAAAAATAAGAATGTGATTTCATGGACTGCCATGCTTGTGGGACTGGCACAGAATGGGCATGCTAGAGATGCCTTGAAGTTATTTTATCGGATGCAAAATGAGAGAGTTACTTTCAATGCCCTCACCTTAGTTAGTTTAGTCCAATGCTGCACGCTCCTAGGCTTGTTACGTGAAGGGAGATGTGTGCATGCTATCTTAACTCGATTTCATTTTGCTTCCGAAGTTGTCGTTATAACAGCCCTCGTTGATATGTATGCAAAATGCAGCAAAATAAACTCAGCTGAGAAGGTATTCAAGTATGGTTTTACGCCTAAGGATGTGATATTATATAATGCTATGATTTCGGGCTATGGAATGCACGGTCTTGGGCGTAAAGCACTGTGCGTCTACCATCAAATGAATCTAGAAGGACTTCAGCCAAACGAGAGTACCTTTGTTTCTCTGCTATCTGCTTGTAGCCATTCAGGCCTGGTGGAAGAGGGGATCTCTTTGTTTCAAAATATGGAGAAAGATCATGACGTAACACCTACCGATAAACTTTACGCTTGTTTTGTAGATCTTCTATGTCGAGCAGGTCGCCTTCGGCAAGCTGAGGAATTAATCAATCAAATGCCTTTCATGCCAACCAGTGGCATACTTGAAACTCTGCTGAATGGATGTCTTTTGCACAAGGACATTGAATTAGGTGTAAAATTTGCTGACAGATCACTCTCCTTGGAGTCTAGAAATCCAAGCATCTACATTACCTTGTCAAATATATATGCCGAAGCAAGTCAATGGGATTCGGTAAAGTATGTTCGAGATCTTCGCTCTTCCTATTGGCTCTTTCCACTTACTCGCAGACAGCCCAACAGAGCCCACAACAACCACGACACTCAACTGCAAACAATCCACAATTATGATGATCCCAATTTCCCTGTTCTGCTTTCCGGTCGATCGTTTTCTTTGATGGGGTTTTCATGTTTCTTTGTTCTTGTGAGAAAATCTATGAGTGAAGTGCTTCTCCGAGAGGCGTCTTCTAGAGGTGTAGAAGCCCCTGTAGATAAGGGGAAGAGGAATCAAATTACTGAGTCTCGTGTCCAGGGCGAGAGTGTTCAGGAGAAAGAAGTAGAACGTGTGAGTGCTAATGTAGAGGAGCATGTAAACGTGAACAAGGAAGAGGAGCAGAAGGCTGATGGGGTTCAGGAGCGCCCACGAGCAGAACGGAGAAAGTCGAGGAAGGTTCCGAGGCCAACTAACTTGCCAAACCATTCCCAGGGAGAGCAAGTTGCTGCTGGATGGCCTTCTTGGCTCACGGCAGTTTGTGGAGAGGCTCTCAATGGTTGGATTCCTCGGAAGGCTGATACATTTGAAAAGATTGATAAGATTGGACAAGGAACGTATAGCAATGTGTATAAAGCTAAAGATATACTTACAGGTAAAATTGTTGCACTGAAGAAGGTTCGGTTTGACAATTTGGAACCTGAAAGTGTGAAATTTATGGCTAGAGAGATTCTTATCCTTAGGAGATTAAATCATAACAATGTTGTGAAATTGGAGGGGTTGGTTACATCACGGATGTCTTGTAGTTTATACTTGGTGTTTGAGTACATGGAACATGATTTAGCAGGTCTTGCTGCAAATCCATCGATCAAATTTACGGAATCTCAGGTTAAATGTTTCATGCAACAACTGCTATCTGGACTGGAACACTGTCATAATCGACGGGTGCTTCACCGTGACATTAAAGGATCTAATCTTCTCATTGATAGTGGGGGAGTGCTTAAAATTGCCGACTTTGGATTGGCTTCTTTCTTTGATCCGAATCACAAGCACCCTATGACTAGTCGGGTGGTTACCTTATGGTATCGACCTCCTGAACTTCTTCTTGGAGCAACTGATTATGGAGTAGGTGTAGACCTCTGGAGTGCTGGGTGTATACTGGCTGAGTTATTAGCTGGGAGGCCTATTATGCCTGGCCGTACAGAGGTGGAGCAACTACACAAGATATACAAGCTTTGTGGCTCCCCTTCAGATGAATATTGGAAAAGAGCAAAACTTCCAAATGCAACTTTATTTAAGCCCAGAGAACCTTATAAAAGATGTATAAAGGAGACATTTAAAGATTTCCCCCCATCTTCTCTGCCCCTTATAGAAACGCTTCTTGCAATTGATCCAGCAGAACGAAAGACAGCAACAGATGCATTAAATAGCGAGTTCTTCATGACAGAACCTTTAGCCTGCAAACCCTCCAACCTCCCGAAATATCCTCCCAGTAAGGAGATGGATGCTAGAAGACGGGATGATGAAGCTCGGAGACTAAGAGCAGCTAGTAAAGCCCAGGGAGATGGAGCGAAGAAAACACGCACACGTGTTAGGGCTATTCCAGCTCCCGAAGCCAATGCCGAAATACAAACAAATATTGACAGAAGGCGCTTAATTACACATGCAAATGCAAAGAGCAAAAGTGAAAAGTTTCCCCCACCACATCAGGATGGAGCGCTTGGCTTTACGCTAGGATATTCACGTCATATTGACCCATCTGGTGTTCCTCCTGACATACCATTCAGCTCGACGCTGTTCACTTATTCTAAGGAACCAGTCCAAGCCTGGTCTGGTCCACTAGTCCCTGGTGCTGGCACTGAGGCTCCTAGGCAGAAGAAGCATGTAGGAGGTGTATCATCAAATTCTTCCCACGGTTCATCCAAATTGGTAATCAATCAGCCTGGCCTACTCTCAGCTGAGGAGATCATGAATTGA 3933 42.64 MPPFLHLPCSPLKRFISHTSKSSINNALFNPQPNLQPFFSFLQEFPHNILSVKSIHAQIIITNAISGDQILVAKLVRAYSGLGCLENARKVFDKFPQPKTPLCNAMVNGYLQNEHYNDSIELLKMMSRCDLEFDSYTCNFALKACMSLSDYEMGMEVIRLAVCKGLARGRFLGSSILNFLVKTGDIMSAHIFFHQMVEKDVVCWNVMIGGFMQEGLFSEGYNVFLDMLYNKIEPSAVTMTILIQSCGEMRNLKFGKCIHSYVLGFGMSSDTRVLTSLIDMYCKSGDVESARWIFDTMPLRNLVSWNVMISGYVQNGFLVETLYLSRMLVMNDGGFDTGTAVSLIQLCSRTADLDGGKILHGCIYRRGLDLNLVLSTAIVDLYAKCGSLAYASSVFERMKNKNVISWTAMLVGLAQNGHARDALKLFYRMQNERVTFNALTLVSLVQCCTLLGLLREGRCVHAILTRFHFASEVVVITALVDMYAKCSKINSAEKVFKYGFTPKDVILYNAMISGYGMHGLGRKALCVYHQMNLEGLQPNESTFVSLLSACSHSGLVEEGISLFQNMEKDHDVTPTDKLYACFVDLLCRAGRLRQAEELINQMPFMPTSGILETLLNGCLLHKDIELGVKFADRSLSLESRNPSIYITLSNIYAEASQWDSVKYVRDLRSSYWLFPLTRRQPNRAHNNHDTQLQTIHNYDDPNFPVLLSGRSFSLMGFSCFFVLVRKSMSEVLLREASSRGVEAPVDKGKRNQITESRVQGESVQEKEVERVSANVEEHVNVNKEEEQKADGVQERPRAERRKSRKVPRPTNLPNHSQGEQVAAGWPSWLTAVCGEALNGWIPRKADTFEKIDKIGQGTYSNVYKAKDILTGKIVALKKVRFDNLEPESVKFMAREILILRRLNHNNVVKLEGLVTSRMSCSLYLVFEYMEHDLAGLAANPSIKFTESQVKCFMQQLLSGLEHCHNRRVLHRDIKGSNLLIDSGGVLKIADFGLASFFDPNHKHPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGRPIMPGRTEVEQLHKIYKLCGSPSDEYWKRAKLPNATLFKPREPYKRCIKETFKDFPPSSLPLIETLLAIDPAERKTATDALNSEFFMTEPLACKPSNLPKYPPSKEMDARRRDDEARRLRAASKAQGDGAKKTRTRVRAIPAPEANAEIQTNIDRRRLITHANAKSKSEKFPPPHQDGALGFTLGYSRHIDPSGVPPDIPFSSTLFTYSKEPVQAWSGPLVPGAGTEAPRQKKHVGGVSSNSSHGSSKLVINQPGLLSAEEIMN 1310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 35313914 35332184 + CePI673135_03g017070.1 Cec03g1707 199331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec03g1707 1310 MobiDBLite consensus disorder prediction 1268 1295 - -
Cec03g1707 1310 Pfam PPR repeat family 503 551 IPR002885 -
Cec03g1707 1310 Pfam PPR repeat family 199 246 IPR002885 -
Cec03g1707 1310 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 474 671 - -
Cec03g1707 1310 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 402 436 IPR002885 -
Cec03g1707 1310 Coils Coil 768 795 - -
Cec03g1707 1310 MobiDBLite consensus disorder prediction 740 800 - -
Cec03g1707 1310 Gene3D Tetratricopeptide repeat domain 253 358 IPR011990 GO:0005515(InterPro)
Cec03g1707 1310 Gene3D Phosphorylase Kinase; domain 1 835 930 - -
Cec03g1707 1310 ProSiteProfiles Protein kinase domain profile. 848 1132 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec03g1707 1310 ProSitePatterns Serine/Threonine protein kinases active-site signature. 968 980 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cec03g1707 1310 SMART serkin_6 848 1132 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec03g1707 1310 MobiDBLite consensus disorder prediction 737 820 - -
Cec03g1707 1310 Pfam E motif 621 666 IPR046848 -
Cec03g1707 1310 Gene3D Tetratricopeptide repeat domain 168 252 IPR011990 GO:0005515(InterPro)
Cec03g1707 1310 Gene3D Tetratricopeptide repeat domain 51 167 IPR011990 GO:0005515(InterPro)
Cec03g1707 1310 Gene3D Tetratricopeptide repeat domain 555 663 IPR011990 GO:0005515(InterPro)
Cec03g1707 1310 Gene3D Tetratricopeptide repeat domain 453 554 IPR011990 GO:0005515(InterPro)
Cec03g1707 1310 Gene3D Tetratricopeptide repeat domain 359 452 IPR011990 GO:0005515(InterPro)
Cec03g1707 1310 FunFam Pentatricopeptide repeat-containing protein mitochondrial 354 459 - -
Cec03g1707 1310 MobiDBLite consensus disorder prediction 1281 1295 - -
Cec03g1707 1310 PANTHER OS07G0578800 PROTEIN-RELATED 436 667 IPR045215 GO:0003723(PANTHER)|GO:0003723(InterPro)|GO:0009451(InterPro)|GO:0009451(PANTHER)|GO:0043231(PANTHER)
Cec03g1707 1310 Pfam Protein kinase domain 848 1132 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec03g1707 1310 NCBIfam pentatricopeptide repeat 507 540 IPR002885 -
Cec03g1707 1310 NCBIfam pentatricopeptide repeat 404 435 IPR002885 -
Cec03g1707 1310 NCBIfam pentatricopeptide repeat 542 575 IPR002885 -
Cec03g1707 1310 NCBIfam pentatricopeptide repeat 202 235 IPR002885 -
Cec03g1707 1310 FunFam probable serine/threonine-protein kinase At1g54610 931 1172 - -
Cec03g1707 1310 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 200 234 IPR002885 -
Cec03g1707 1310 MobiDBLite consensus disorder prediction 1150 1181 - -
Cec03g1707 1310 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 504 538 IPR002885 -
Cec03g1707 1310 MobiDBLite consensus disorder prediction 1142 1181 - -
Cec03g1707 1310 FunFam probable serine/threonine-protein kinase At1g54610 835 930 - -
Cec03g1707 1310 CDD STKc_CDK9_like 848 1132 - -
Cec03g1707 1310 SUPERFAMILY Protein kinase-like (PK-like) 843 1136 IPR011009 -
Cec03g1707 1310 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 270 304 IPR002885 -
Cec03g1707 1310 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 539 569 IPR002885 -
Cec03g1707 1310 ProSitePatterns Protein kinases ATP-binding region signature. 854 877 IPR017441 GO:0005524(InterPro)
Cec03g1707 1310 Pfam PPR repeat 376 403 IPR002885 -
Cec03g1707 1310 Pfam PPR repeat 303 320 IPR002885 -
Cec03g1707 1310 Pfam PPR repeat 103 130 IPR002885 -
Cec03g1707 1310 Pfam PPR repeat 581 602 IPR002885 -
Cec03g1707 1310 Pfam PPR repeat 404 433 IPR002885 -
Cec03g1707 1310 Pfam PPR repeat 275 300 IPR002885 -
Cec03g1707 1310 Gene3D Transferase(Phosphotransferase) domain 1 931 1171 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec03g0381 Cec-Chr3:4241619 Cec03g1707 Cec-Chr3:35313914 4.30E-190 dispersed
Cec03g1707 Cec-Chr3:35313914 Cec05g0684 Cec-Chr5:5607655 1.80E-231 dispersed
Cec11g1943 Cec-Chr11:33537186 Cec03g1707 Cec-Chr3:35313914 2.20E-47 dispersed
Cec02g1707 Cec-Chr2:34799843 Cec03g1707 Cec-Chr3:35313914 8.20E-242 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71866 PF00069 Pkinase 2.70E-67 CL0016 Cec PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec03g1707 K08819 - csv:101215893 1079.32