Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec03g1767 ATGGGCTGTGTTGTGAAATGCGTTTTCATGATTGTTATCTTCATTTCGATGCCTTTTTCATCGCAGAACTCCCACGTTTTGATTGCTAACTCATTGTTGAATACAGCAGAGAGCTTCAATGTTAAAGAGCTAGAGAGAGTTTCAGGGGAAGATGAGAGTGGAGGAAATGAACCTTTCATTCTGGAGAGAGTCAGAGCTCTGCTTGGACTCAAGAGTTTACAATTGGGAAATCAAAGCCCATCAGATCTTTCACCTTTGCCGTCGCCATTGCCGTCTCCATCACCAGCCGCCATTGCTCCTTCTCCTGTTCCTATGGCAGCTCATCGAGTGCACATTCATGAACATTCCCACCCTCATCAACTCCGCTTGCACAAGAGCCGACCAGTATACAAACCTAAAAGAAAAGAAGATCCAAAAGAAGGCAGAGTCAGAAAAATTCTTGTCGCAGTTCTTGTGTCTGCAGGAGTCACCATTTTGATATGCTCTATTATTGCCTTTTGGGTCTGCAAGAAGTTCAAAAGTCAGAGAGAGGAATCCATGGAGAAGCATTCTGTTAAGAGTGAAAGAGAAGAGAAGACAGGAAGACCAAAATCTGGCCTTGATCTGTTCGATCTCGGTATGCTTGGAATGGATGTAGAAGAACAGACCCATACTTCTGTAAGTGAAAAGGAGTTATCTGTTCATAAAGAGGGGGAAAGGGACCAAGAGACGTTGGATTCAGAATCTGATAATGTAAGTGTTTCTTCAAGCAAGGAAATGATGTATGTTCATGAGGAAGATGATAGTAAATCAATACAATGCGTATCTGATGGAACTCATTCCTCACCTGGGGATAGAGTTACTCCTGTTAAATGTTGTTCGTCTGATGATGAGGAATCATTCCATTCTTGTGGTGACTCCAATTTGTTGAATGCTCGCCTTTCAAATGCTTCCGGATCTTCTTCTGCGAATGTGATAACAAATTCTACTCGTTCTGTGCCAACTGTGAACTTATCAAGTAAATTGGAAATACAATGTGATGAATCTAACAAACTATTAACTTCTGACCATTCGCATCTTACCCTTTCTCCTTGTAGTTCAGAACCCAAAATGAAGATGGTTTCCCATTCTGTAGGTTGCCAAAAGAATGTCCCATCTTTATCTCCACCTCCTCCACCACCACCGCCACCACCGCCTCCGCCAGTCACTGATCGCAGTTCATTTTCCTTCTCTTCACCCTTTTCAACTGGATCTACTTCCTCTTCTGCATTGTTAAGATCCTCATCTCCTGCAATGTCATATTCTTCTTCGTTATCTCAAATACCATGGAATGATTTACCATCACCTCAAACTGCTACTAAACCTTCACTACCATCATCTGCTATTCCTCCACCCCCTTCTCCACCTCCAAGTTTGAAAACAAACGCTTACTCTTTCAAAACTCCACCTCCTCCTCCTTCCAAGCTCCCTCAATTCATGGCATTTGGAAAAGAGGGAAATTTGCGGCCAAAACTTAAGCCTCTCCACTGGGACAAAGTAAGAGCTACACCAGATCAATCAATGGTGTGGGACAAGCTAAGATGGAGCTCATTTGAGCTAGATGAAGAAATGATTGAATCACTATTTGGCTACAACCAACATGATTCAATGAAGAATGGTGATGCTAGCAACAAAAGCCCTTCTCCAAGCAAACATATACTAGAGGCAAAAAGACTTCAGAACCTAACCATTCTCTTAAAAGCCCTGAATCTCTCTACAGAACAAGTTTGTGAAGCCATAGAACAAGGTAGTGGGTTGCGTTTGAGACAACTTGAAGCACTGGTTAAGATGGTACCAACTCAAGAAGAAGAAGCCAAATTGTTAAGCTATGAAGGAGACATCGGTGAATTAGGTTGTACAGAGAAGTTTGTCATAGCAATTCTGAGAATAACATTCGCCTTCCAAAGAATAGAAGCCATGCTTTACAGAGAAACTTTTGAAGATGAAGTGAACCATCTACGGAATTCATTTTCCATACTAGAGGAAGCCTGCAAGGAACTAAGATCCAGCAGACTCTTCCTGAAACTACTAGAAGCCGTGCTAAAAACAGGGAATCGAATGAACGTCGGAACAAGCAGAGGAGGCGCTAGAGCATTTAAACTAGACGCCCTCCTAAAGCTCTCCGACGTCAAAGGAACCGACGGCAAAACATCTCTACTCCACTTCGTGGTACAAGAAATAATCCGGTCTGAAGGAATCAGAGTATCGGGTAGCATAATGGGAAAAATCAACCAAAAAAACAAATCAAGAACAATGGAAGAAAGAGAAAACGATTACCGAAGAATGGGGTTAGATCTGGTATCGGGGTTGAGCACGGAACTGCAGAACGTGAAGCGAGCGGCGACGATCGATCTGAAAGTAGTTGGAAGCTCGAGGGGAAATCTGAATGAGGGAATGGGGAAAATGGAGAAACTGGTGGGGAAGGAGTTGAGTGTGGATGAAAGGAGTGGGAATTTCGTGGAAGCCATGAAAGGGTTTGTGGGCTATGTGAAGAAGAGGATGGAGGAAGTGAGGAAGGATGAAGAAAGGGTAATGTCGAGTGTGAGAGAGATTACAGAGTACTTCCATGGAAATGTGAGCAAAGAAGAGACGAATCCGTTGAGGATTTTTGTGATTGTGAGAGATTTTCTTGGAATGTTGGACAACGTCTGTAAGAGCTTCAAGATTGGAAGTTGA 2694 42.91 MGCVVKCVFMIVIFISMPFSSQNSHVLIANSLLNTAESFNVKELERVSGEDESGGNEPFILERVRALLGLKSLQLGNQSPSDLSPLPSPLPSPSPAAIAPSPVPMAAHRVHIHEHSHPHQLRLHKSRPVYKPKRKEDPKEGRVRKILVAVLVSAGVTILICSIIAFWVCKKFKSQREESMEKHSVKSEREEKTGRPKSGLDLFDLGMLGMDVEEQTHTSVSEKELSVHKEGERDQETLDSESDNVSVSSSKEMMYVHEEDDSKSIQCVSDGTHSSPGDRVTPVKCCSSDDEESFHSCGDSNLLNARLSNASGSSSANVITNSTRSVPTVNLSSKLEIQCDESNKLLTSDHSHLTLSPCSSEPKMKMVSHSVGCQKNVPSLSPPPPPPPPPPPPPVTDRSSFSFSSPFSTGSTSSSALLRSSSPAMSYSSSLSQIPWNDLPSPQTATKPSLPSSAIPPPPSPPPSLKTNAYSFKTPPPPPSKLPQFMAFGKEGNLRPKLKPLHWDKVRATPDQSMVWDKLRWSSFELDEEMIESLFGYNQHDSMKNGDASNKSPSPSKHILEAKRLQNLTILLKALNLSTEQVCEAIEQGSGLRLRQLEALVKMVPTQEEEAKLLSYEGDIGELGCTEKFVIAILRITFAFQRIEAMLYRETFEDEVNHLRNSFSILEEACKELRSSRLFLKLLEAVLKTGNRMNVGTSRGGARAFKLDALLKLSDVKGTDGKTSLLHFVVQEIIRSEGIRVSGSIMGKINQKNKSRTMEERENDYRRMGLDLVSGLSTELQNVKRAATIDLKVVGSSRGNLNEGMGKMEKLVGKELSVDERSGNFVEAMKGFVGYVKKRMEEVRKDEERVMSSVREITEYFHGNVSKEETNPLRIFVIVRDFLGMLDNVCKSFKIGS 897
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 35954173 35957263 - CePI673135_03g017670.1 Cec03g1767 199391

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec03g1767 897 MobiDBLite consensus disorder prediction 178 198 - -
Cec03g1767 897 Coils Coil 649 669 - -
Cec03g1767 897 MobiDBLite consensus disorder prediction 114 129 - -
Cec03g1767 897 SUPERFAMILY Formin homology 2 domain (FH2 domain) 501 891 - -
Cec03g1767 897 SMART it6_source 488 895 IPR015425 -
Cec03g1767 897 MobiDBLite consensus disorder prediction 178 200 - -
Cec03g1767 897 Pfam Formin Homology 2 Domain 493 886 IPR015425 -
Cec03g1767 897 MobiDBLite consensus disorder prediction 357 480 - -
Cec03g1767 897 MobiDBLite consensus disorder prediction 79 101 - -
Cec03g1767 897 PANTHER FORMIN-RELATED 65 893 IPR027643 GO:0003779(InterPro)|GO:0030036(InterPro)|GO:0045010(InterPro)|GO:0051015(InterPro)
Cec03g1767 897 MobiDBLite consensus disorder prediction 114 138 - -
Cec03g1767 897 MobiDBLite consensus disorder prediction 398 450 - -
Cec03g1767 897 MobiDBLite consensus disorder prediction 215 281 - -
Cec03g1767 897 ProSiteProfiles Formin homology-2 (FH2) domain profile. 488 897 IPR015425 -
Cec03g1767 897 MobiDBLite consensus disorder prediction 451 465 - -
Cec03g1767 897 MobiDBLite consensus disorder prediction 84 100 - -
Cec03g1767 897 MobiDBLite consensus disorder prediction 216 240 - -
Cec03g1767 897 MobiDBLite consensus disorder prediction 378 397 - -
Cec03g1767 897 Gene3D Formin, FH2 domain 487 894 IPR042201 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec03g1767 K28090 - - csv:101208374 1410.97
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec03g1767 Cec-Chr3:35954173 Cec11g0101 Cec-Chr11:1230218 6.80E-105 dispersed
Cec03g1767 Cec-Chr3:35954173 Cec05g1657 Cec-Chr5:27272658 7.30E-99 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g193 . . . . . . . . Cmo10g01196 Cmo11g01174 . . . . Sed04g0465 . . Bhi02g02104 Tan09g0197 Cmetu02g0328 . Hepe09g1587 . . . . . . . . . . . Cone5ag0041 . Lsi06g00120 . Chy08g01021 . . . . . Bpe05g00226 . . Bma05g00280 . . . Cma10g01113 Cma11g01134 Car10g00964 Car11g00952 Cpe04g00158 . . . . . . . . Cla03g01635 Cam03g1721 Cec03g1767 Cco03g1771 Clacu03g1743 Cmu03g2293 Cre03g1973 . Csa01g02771 . Cme02g00090
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec07g0284 . 181 1049 FH2 protein (formin) Gene Family AT3G25500 52.5 3.1e-194 676.0
Cec11g0101 . 464 940 FH2 protein (formin) Gene Family AT3G25500 67.1 1.1e-165 581.3
Cec02g1278 . 432 888 FH2 protein (formin) Gene Family AT3G25500 59.9 3.1e-141 500.0
Cec03g1767 . 495 892 FH2 protein (formin) Gene Family AT3G25500 51.5 2.6e-103 374.0
Cec07g0284 . 612 1071 FH2 protein (formin) Gene Family AT2G43800 60.4 4.1e-142 502.7
Cec02g1278 . 466 904 FH2 protein (formin) Gene Family AT2G43800 55.1 9.1e-126 448.4
Cec02g0866 . 489 626 FH2 protein (formin) Gene Family AT4G15200 71.4 2.6e-47 186.8
Cec05g1657 . 569 715 FH2 protein (formin) Gene Family AT4G15200 66.7 3.4e-47 186.4
Cec05g1657 . 570 1006 FH2 protein (formin) Gene Family AT5G54650 69.2 3.3e-168 589.3
Cec02g0866 . 492 947 FH2 protein (formin) Gene Family AT5G54650 63.3 6.9e-158 555.1
Cec07g0284 . 623 1024 FH2 protein (formin) Gene Family AT5G54650 50.8 2.2e-103 374.0
Cec02g1278 . 31 907 FH2 protein (formin) Gene Family AT5G67470 58.4 2.7e-239 825.5
Cec07g0284 . 604 1066 FH2 protein (formin) Gene Family AT5G67470 58.5 8.2e-135 478.4
Cec11g0101 . 477 922 FH2 protein (formin) Gene Family AT5G67470 60.9 1.7e-132 470.7
Cec03g1767 . 495 894 FH2 protein (formin) Gene Family AT5G67470 50.6 1.3e-103 374.8
Cec05g2724 . 346 832 FH2 protein (formin) Gene Family AT1G59910 52.1 6.5e-127 452.2
Cec07g0284 . 644 1025 FH2 protein (formin) Gene Family AT5G48360 52.6 3.0e-101 366.7
Cec02g1278 . 490 865 FH2 protein (formin) Gene Family AT5G48360 50.3 5.9e-89 325.9
Cec02g1278 . 470 864 FH2 protein (formin) Gene Family AT3G05470 52.2 1.6e-106 384.4
Cec05g1657 . 575 989 FH2 protein (formin) Gene Family AT3G05470 50.6 4.6e-106 382.9
Cec07g0276 . 977 1288 FH2 protein (formin) Gene Family AT1G42980 51.1 4.5e-69 258.5
Cec07g0276 . 1 1295 FH2 protein (formin) Gene Family AT1G31810 64.4 0.0e+00 1220.7
Cec06g1416 . 1 1245 FH2 protein (formin) Gene Family AT1G31810 50.4 1.3e-239 827.0
Cec06g1796 . 1337 1658 FH2 protein (formin) Gene Family AT5G07650 75.2 7.0e-130 461.8
Cec01g1748 . 974 1284 FH2 protein (formin) Gene Family AT5G07650 70.1 5.6e-119 425.6
Cec05g1807 . 1040 1362 FH2 protein (formin) Gene Family AT5G07650 65.0 3.6e-110 396.4
Cec06g1416 . 935 1254 FH2 protein (formin) Gene Family AT5G07650 62.9 1.1e-109 394.8
Cec07g0276 . 961 1292 FH2 protein (formin) Gene Family AT5G07650 59.6 9.9e-108 388.3
Cec06g1796 . 1264 1651 FH2 protein (formin) Gene Family AT5G07770 69.4 6.6e-141 498.0
Cec01g1748 . 897 1284 FH2 protein (formin) Gene Family AT5G07770 63.2 6.4e-128 454.9
Cec05g1807 . 964 1354 FH2 protein (formin) Gene Family AT5G07770 59.4 9.2e-119 424.5
Cec06g1416 . 858 1246 FH2 protein (formin) Gene Family AT5G07770 57.3 4.3e-116 415.6
Cec07g0276 . 897 1286 FH2 protein (formin) Gene Family AT5G07770 55.2 8.1e-115 411.4
Cec05g1807 . 956 1362 FH2 protein (formin) Gene Family AT3G32400 75.9 9.7e-170 593.6
Cec06g1416 . 865 1255 FH2 protein (formin) Gene Family AT3G32400 69.2 2.7e-148 522.3
Cec06g1796 . 1264 1658 FH2 protein (formin) Gene Family AT3G32400 65.0 2.5e-141 499.2
Cec07g0276 . 897 1291 FH2 protein (formin) Gene Family AT3G32400 65.5 2.7e-140 495.7
Cec01g1748 . 867 1287 FH2 protein (formin) Gene Family AT3G32400 58.3 8.0e-132 467.6
Cec05g1807 . 1 1362 FH2 protein (formin) Gene Family AT2G25050 53.9 0.0e+00 1175.6
Cec06g1416 . 1 1255 FH2 protein (formin) Gene Family AT2G25050 54.0 8.9e-291 996.9
Cec06g1796 . 1265 1658 FH2 protein (formin) Gene Family AT5G07780 63.0 1.7e-123 439.9
Cec01g1748 . 898 1287 FH2 protein (formin) Gene Family AT5G07780 57.9 1.0e-112 404.1
Cec05g1807 . 965 1355 FH2 protein (formin) Gene Family AT5G07780 54.3 2.5e-103 372.9
Cec06g1416 . 865 1254 FH2 protein (formin) Gene Family AT5G07780 53.8 1.8e-101 366.7
Cec07g0276 . 898 1287 FH2 protein (formin) Gene Family AT5G07780 52.0 2.4e-101 366.3
Cec06g1796 . 1 1667 FH2 protein (formin) Gene Family AT5G07740 62.7 0.0e+00 1128.2
Cec06g1796 . 1336 1665 FH2 protein (formin) Gene Family AT5G07760 74.7 1.5e-128 457.6
Cec01g1748 . 973 1287 FH2 protein (formin) Gene Family AT5G07760 69.3 1.3e-116 417.9
Cec06g1416 . 934 1254 FH2 protein (formin) Gene Family AT5G07760 64.7 5.2e-110 396.0
Cec05g1807 . 1039 1371 FH2 protein (formin) Gene Family AT5G07760 63.7 3.4e-109 393.3
Cec07g0276 . 971 1292 FH2 protein (formin) Gene Family AT5G07760 60.1 1.1e-104 378.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006698 1 1 1 1 1 1 2 2 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 37