Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec03g1798 ATGTTAAGAGTTTCTTTAGCCATTCATCTTTTTACGTTGATCTTTATTCCCGCATTACAAGTTTCCTGCATTGCTGTTATCTACCCGAATGAGCAGAATAATGTTAGACAATCCATGATTTCTAAGATTTGTGCAGATATCGAAGATCGAAATTCATGCATTTCGAACATACAACTTGAGATGGGAAGAAGTGTGAACTCAAGTCCAAGTTCTGTCTTGAGTGCTGCAATTAGAGCAACTCTTAATGAAGCTAGACGAGCCATAGAGTCTATAACAAAGTTCAGCACATTCTCGTTTAGCTACCGTGAAGAAATGGCAATCGAGGACTGCAAGGAGCTTCTTGATTTCTCTGTGTCAGAGCTTGCCTGGTCATTAGCTGAGATGAAAAGGATTCGTGCAGGCAAAAACGAAGCTTCCGACGAAGGGAATCTAAAAGCATGGCTGAGCGCTGCTCTCAGCAACCAAGACACATGCCTTGAAGGCTTTGAAGGCACAGACAGGCATATTGTAGGTTTCATTAGAGGTAGTTTGAAGCAAGTTACACTGCTCATTAGCAATGTCTTGGCATTGTACACTCAATTACACAGCTTACCATTTCAACCCCCGCGGAATGAAACAATAGAGAAAACCAAAAATTCGGAGTTTCCAGATTGGATGATGGATAGCGAGCACAAGCTCGTGAAATCTCATCCACGTAACGTCCATGTTGATGCAGTCGTGGCTTTGGATGGAAGCGGAGATTTCCGTTCTATCACAGAAGCTGTAAATGAAACTCCAAATTATAGCAATAGAAGGTACATCATATATGTAAAGAAGGGAGTCTACAAAGAAAATATCGACATGAAGCGGAAGAAAACCAACATAATGTTTATTGGAGATGGTATTGGAGAAACAATAGTGACGGGAAATCGCAATTTTCTGCAGGGATGGACTACTTTCAGAACTGCAACTGTTGCTGTCTCTGGGAAGGGATTCATAGCAAGAGACATGACATTTCGCAACACGGCTGGACCAGAAAACCATCAAGCAGTGGCACTCCGAGTTGACTCTGATCAATCAGCCTTCTTTCGGTGCAGCTTCGAAGGCCATCAAGACACGCTCTACGTCCACTCCCTACGCCAATTTTACAGGGAATGCAACATATATGGCACCATAGACTACATCTTTGGCAACGGGGCAGCAGTATTCCAAAAATGCAACATCTACACTAGAGTTCCACTCCCACTCCAGAAGGTCACGATCACGGCACAAGGTCGAAAGTCCCCGCACCAGAGTACGGGGTTTTCAATCCAAGACAGCTTTATTTATGCAACTCAGCCAACGTATCTTGGAAGACCATGGAAGTTATATTCAAGGACTGTCTTCTTGAACACTTACATGAGTGGTTTGGTACAACCTAGAGGATGGCTTGAGTGGTATGGCAATTTTGCTCTAGGCACATTGTGGTATGGAGAATATAAAAACTATGGACCTGGTGCATCCCTTTCGGGTCGGGTCAAATGGCCTGGGTACCATGATATCCGTGACCCTGCCATGGCTAGGTTCTTCACCTCCGAGCACTTCATCGACGGTCGATCATGGTTGCCAAAGACGGGTATAAAGTTCACATTGGGATTGAGTAATTAA 1626 43.91 MLRVSLAIHLFTLIFIPALQVSCIAVIYPNEQNNVRQSMISKICADIEDRNSCISNIQLEMGRSVNSSPSSVLSAAIRATLNEARRAIESITKFSTFSFSYREEMAIEDCKELLDFSVSELAWSLAEMKRIRAGKNEASDEGNLKAWLSAALSNQDTCLEGFEGTDRHIVGFIRGSLKQVTLLISNVLALYTQLHSLPFQPPRNETIEKTKNSEFPDWMMDSEHKLVKSHPRNVHVDAVVALDGSGDFRSITEAVNETPNYSNRRYIIYVKKGVYKENIDMKRKKTNIMFIGDGIGETIVTGNRNFLQGWTTFRTATVAVSGKGFIARDMTFRNTAGPENHQAVALRVDSDQSAFFRCSFEGHQDTLYVHSLRQFYRECNIYGTIDYIFGNGAAVFQKCNIYTRVPLPLQKVTITAQGRKSPHQSTGFSIQDSFIYATQPTYLGRPWKLYSRTVFLNTYMSGLVQPRGWLEWYGNFALGTLWYGEYKNYGPGASLSGRVKWPGYHDIRDPAMARFFTSEHFIDGRSWLPKTGIKFTLGLSN 541
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 36204177 36205938 - CePI673135_03g017980.1 Cec03g1798 199422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec03g1798 541 ProSitePatterns Pectinesterase signature 1. 262 281 IPR018040 -
Cec03g1798 541 PANTHER PECTINESTERASE 10 530 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Cec03g1798 541 Pfam Pectinesterase 237 524 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cec03g1798 541 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 38 195 IPR035513 -
Cec03g1798 541 Gene3D - 231 539 IPR012334 -
Cec03g1798 541 Gene3D Invertase/pectin methylesterase inhibitor family protein 36 195 IPR035513 -
Cec03g1798 541 Pfam Plant invertase/pectin methylesterase inhibitor 39 190 IPR006501 GO:0004857(InterPro)
Cec03g1798 541 ProSitePatterns Pectinesterase signature 2. 381 390 IPR033131 -
Cec03g1798 541 SMART PMEI_2 35 190 IPR006501 GO:0004857(InterPro)
Cec03g1798 541 SUPERFAMILY Pectin lyase-like 236 538 IPR011050 -
Cec03g1798 541 FunFam Pectinesterase 231 539 - -
Cec03g1798 541 NCBIfam pectinesterase inhibitor domain 9 195 IPR006501 GO:0004857(InterPro)
Cec03g1798 541 CDD PMEI-like_4 67 194 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec03g1798 Cec-Chr3:36204177 Cec10g0006 Cec-Chr10:119820 1.30E-132 dispersed
Cec03g1797 Cec-Chr3:36200064 Cec03g1798 Cec-Chr3:36204177 9.90E-105 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec03g1798 K01051 - csv:101202977 1048.11