Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec03g1848 ATGACAAGGAAGAAAGTGAAACTTGCTTACATAGCAAATGACTCTGCAAGAAAGGCAACATTCAAGAAGAGGAAGAGAGGGCTTATGAAGAAGGTAAGTGAATTGAGCATTCTTTGTGGGATTGAGGCTTGTGCAATCGTCTTTAGTCCTTACGATTCTCAGCCTGAGCTATGGCCTTCCCCCATTGGAGTCCAGCGCGTTCTCTCCCAGTTCAAGAAGATGCCCGAGATGGAGCAGAGCAAGAAGATGGTGAACCAAGAGACGTTTCTAAGGCAGAGGATCGCAAAGGCGAACGAACAATTGAAGAAGATGAGAAAGGACAACCGAGAGAAAGAGATCACACGGTTGATGTTTCAGAGCCTCACGGCTACAAAAGGGCTGCATGGCCTCAACATGCTTGATTTGAACGATCTAGGTTGGCTTATTGATCAGAATCTTAAAGACATTGGTACACGCATTGACACTCTAAAAAAGCCTCCGACTCAGCTACAGCCTCAGCCTCAGCCTCAGCCTCCACCTCAACCTTCACAAATTCAACCGCTCACGGCGGCGTGGCTCATGGAGCTTGTGAGCCCTCAGGATCAAATGGGGTTTGTTGGGGATGATATGCTTTTGCCTTTTGGGGATCAAACTTATAACCCTAATAATGCAATGTGGTCCAATGCCTTTTTCCCTTAG 678 46.9 MTRKKVKLAYIANDSARKATFKKRKRGLMKKVSELSILCGIEACAIVFSPYDSQPELWPSPIGVQRVLSQFKKMPEMEQSKKMVNQETFLRQRIAKANEQLKKMRKDNREKEITRLMFQSLTATKGLHGLNMLDLNDLGWLIDQNLKDIGTRIDTLKKPPTQLQPQPQPQPPPQPSQIQPLTAAWLMELVSPQDQMGFVGDDMLLPFGDQTYNPNNAMWSNAFFP 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 36808135 36808902 - CePI673135_03g018480.1 Cec03g1848 199472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec03g1848 225 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981(InterPro)|GO:0000987(InterPro)|GO:0045944(InterPro)
Cec03g1848 225 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec03g1848 225 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec03g1848 225 Coils Coil 87 114 - -
Cec03g1848 225 MobiDBLite consensus disorder prediction 162 178 - -
Cec03g1848 225 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 160 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cec03g1848 225 Gene3D - 13 97 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec03g1848 225 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Cec03g1848 225 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec03g1848 225 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec03g1848 225 MobiDBLite consensus disorder prediction 156 178 - -
Cec03g1848 225 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec03g1848 225 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec03g1848 225 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g1046 Cec-Chr1:15625204 Cec03g1848 Cec-Chr3:36808135 7.20E-61 dispersed
Cec03g1848 Cec-Chr3:36808135 Cec10g1833 Cec-Chr10:33137700 4.30E-32 dispersed
Cec03g1848 Cec-Chr3:36808135 Cec04g1519 Cec-Chr4:34709076 7.30E-08 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29268 PF00319 SRF-TF 7.90E-19 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec03g1848 - - - 0.0