Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec03g1851 ATGGGCATCAAGGGTTTAACCAAGCTTTTAGCTGATAATGCCCCCAAGGGCATGAAGGAGCAGAAGTTCGAAACCTATTTCGGCCGCAAAATCGCAATTGATGCCAGCATGAGTATTTATCAATTTCTTATTGTCGTGGGAAGAAGTGGGACCGAGATGCTGACCAACGAAGCTGGTGAAGTCACTAGCCACTTGCAAGGGATGTTTAACCGGACAATAAGGCTTCTCGAAGCTGGAATTAAGCCAGTCTATGTCTTTGATGGAAAGCCTCCTGATTTGAAAAAACAAGAACTTGCAAAACGTTATTCAAAAAGAGTAGATGCTACCGAGGACCTAGCAGATGCTATCGAGGTTGGCAACAAGGAGGACATTGAGAAATTTAGTAAAAGGACGGTGAAGGTTACAAAGCAGCACAATGATGACTGTAAAAGACTCTTGAGGCTCATGGGAGTGCCTGTGATCGAGGCTCCCTCAGAAGCTGAGGCACAATGTGCTGTGCTTTGCAAGTTAGGAAAGGTTTATGCTGTGGCGTCAGAAGACATGGATTCACTAACATTTGGATCTCCCAGATTTCTTCGTCATTTAATGGATCCCAGCTCAAGGAAGATCCCAGTTATGGAATTTGAAGTGGCTAAGATTTTGGAGGAGCTGAACCTCACCATGGATCAGTTTATCGATTTGTGCATTCTTTCTGGATGTGATTATTGTGACAATATCCGAGGTATAGGGGGGCAGACTGCTCTAAAGCTTATCCGTCAACATGGGTCTATAGAAACTATATTAGAGAACATAAATAAAGAGAGAAGGCAAGATGGCTTCATTCCCAACCCACAATCCGATTGGACCAACTACAGGACAAAATTGATCTACCAAGCTTCAATTGGTAATCTTGATGTGGAGGATTTTCATGATTGGATCAAGAATATAGAAAACTTCTTGGATTACAAGAACACATGGGAGGAAAAGGTTGCGTTGAAGCTCAAAGGTGGAGATGTTCATAGGATGAAAAGATCAAATCTTAGTTTCAGTTTGGAAGATCTGGATGGCTTAAAAGTAATTAATTCCACTGATCTCGATGGAATTATTGCTGTTGGCCCTAATGTGGTTGATCCTCTCTTTTCTATTGATGATATTTTACCACAAAAAGAACCGCAAGAAGAAGCTAAGCATTCAAAGGGGATTCTTCTTCTGAATTTTTCATCTTCTAAAACTACAGTCTACCAGGAATCTTGTACTTGTCTATTGATTTTCTCTTCACATTTGATAAGCCTCCTCGTCATTTCAAAGCAGTATCAGTACCAAATTCCAGATGATTGGCCTTATCAAGAGGCCCGACAGCTTTTTAAAGAACCACTAGTATGTACTGACGAAGAGCAGCTTGACATTAAGTGGACTACTCCAGATGAAGAAGGCTTATTAACATTTTTGGTGAATGAGAATGGGTTCAACAGTGAAAGAGTGACAAAGGCAGTAGAAAAAATTAAAGCAGCCAAGAACAAGTCATCACAGGGCCGGATGGAATCATTTTTCAAGCCCGTCACTAATCCTTCAGTATCCATTAAGCGAAAGGTAAACAAATGTGTACTTAGGTCTCCTAAACCAGGAGCCCAACATAAAGTCTCCCCACAAGCATTTTATTCGTCAAGGACGAATGCCATTGGCAGCCTAGGCATGTCAATGTTAGACCATTCCTCCAAGTACTCGGGGTCAGGGCTATTAGTTATGGCTGTCTGCTTCGATAAATAA 1746 41.58 MGIKGLTKLLADNAPKGMKEQKFETYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGEVTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKRVDATEDLADAIEVGNKEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEAPSEAEAQCAVLCKLGKVYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDNIRGIGGQTALKLIRQHGSIETILENINKERRQDGFIPNPQSDWTNYRTKLIYQASIGNLDVEDFHDWIKNIENFLDYKNTWEEKVALKLKGGDVHRMKRSNLSFSLEDLDGLKVINSTDLDGIIAVGPNVVDPLFSIDDILPQKEPQEEAKHSKGILLLNFSSSKTTVYQESCTCLLIFSSHLISLLVISKQYQYQIPDDWPYQEARQLFKEPLVCTDEEQLDIKWTTPDEEGLLTFLVNENGFNSERVTKAVEKIKAAKNKSSQGRMESFFKPVTNPSVSIKRKVNKCVLRSPKPGAQHKVSPQAFYSSRTNAIGSLGMSMLDHSSKYSGSGLLVMAVCFDK 581
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 36847550 36858549 - CePI673135_03g018510.1 Cec03g1851 199475

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec03g1851 581 SUPERFAMILY PIN domain-like 2 234 IPR029060 -
Cec03g1851 581 SMART HhH_4 221 254 IPR008918 GO:0003677(InterPro)|GO:0003824(InterPro)
Cec03g1851 581 FunFam Flap endonuclease 1 10 222 - -
Cec03g1851 581 Hamap Flap endonuclease 1 [fen]. 1 343 IPR023426 GO:0016788(InterPro)
Cec03g1851 581 FunFam Flap endonuclease 1 219 286 - -
Cec03g1851 581 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 219 517 IPR036279 -
Cec03g1851 581 ProSitePatterns XPG protein signature 2. 150 164 IPR019974 GO:0016788(InterPro)
Cec03g1851 581 Gene3D - 10 222 - -
Cec03g1851 581 Pfam XPG N-terminal domain 1 107 IPR006085 GO:0004518(InterPro)
Cec03g1851 581 SMART xpgn3 1 108 IPR006085 GO:0004518(InterPro)
Cec03g1851 581 CDD H3TH_FEN1-Euk 222 268 - -
Cec03g1851 581 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 167 187 IPR006084 -
Cec03g1851 581 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 28 42 IPR006084 -
Cec03g1851 581 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 82 101 IPR006084 -
Cec03g1851 581 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 224 239 IPR006084 -
Cec03g1851 581 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 146 163 IPR006084 -
Cec03g1851 581 SMART xpgineu 147 219 IPR006086 GO:0004518(InterPro)
Cec03g1851 581 Pfam XPG I-region 150 234 IPR006086 GO:0004518(InterPro)
Cec03g1851 581 SMART 53exo3 29 305 IPR002421 GO:0003677(InterPro)|GO:0008409(InterPro)
Cec03g1851 581 Gene3D - 223 291 - -
Cec03g1851 581 CDD PIN_FEN1 4 219 - -
Cec03g1851 581 ProSitePatterns XPG protein signature 1. 80 94 IPR019974 GO:0016788(InterPro)
Cec03g1851 581 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 539 IPR006084 GO:0008409(PANTHER)|GO:0017108(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec03g1851 K04799 - - csv:101204273 523.087
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec03g1851 Cec-Chr3:36847550 Cec10g1458 Cec-Chr10:28914054 8.20E-11 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g15 . . . . . . . . . . . . . . Sed04g0382 . . Bhi02g02229 Tan09g0026 Cmetu02g1464 . . . . . . . . . . . . . Cone5ag0109 Cone1ag1587 Lsi06g00020 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla03g01715 Cam03g1804 Cec03g1851 Cco03g1856 Clacu03g1825 Cmu03g2373 Cre03g2054 . . . Cme02g00001
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec08g0257 . 105 657 Core DNA Replication Machinery Family AT4G14700 65.9 2.0e-212 736.1
Cec08g0257 . 105 660 Core DNA Replication Machinery Family AT4G12620 67.7 9.8e-220 760.4
Cec08g1624 . 65 425 Core DNA Replication Machinery Family AT2G37560 64.8 5.6e-140 494.2
Cec07g0530 . 9 410 Core DNA Replication Machinery Family AT2G01120 64.3 1.5e-150 529.6
Cec06g0376 . 3 531 Core DNA Replication Machinery Family AT4G29910 58.0 1.5e-171 599.7
Cec11g0910 . 1 283 Core DNA Replication Machinery Family AT1G26840 66.1 6.5e-94 340.9
Cec09g2365 . 68 863 Core DNA Replication Machinery Family AT1G79150 58.8 1.0e-243 840.1
Cec10g1313 . 8 940 Core DNA Replication Machinery Family AT1G44900 75.5 0.0e+00 1352.8
Cec04g2153 . 128 702 Core DNA Replication Machinery Family AT5G46280 81.0 8.0e-269 922.9
Cec02g0506 . 192 1036 Core DNA Replication Machinery Family AT2G16440 75.9 0.0e+00 1147.5
Cec11g0370 . 1 735 Core DNA Replication Machinery Family AT2G07690 78.4 0.0e+00 1111.7
Cec04g2312 . 7 835 Core DNA Replication Machinery Family AT5G44635 71.6 0.0e+00 1173.3
Cec09g0509 . 4 722 Core DNA Replication Machinery Family AT4G02060 85.3 0.0e+00 1220.3
Cec02g2065 . 55 512 Core DNA Replication Machinery Family AT2G29680 61.4 6.7e-158 554.3
Cec02g2065 . 37 482 Core DNA Replication Machinery Family AT1G07270 58.8 1.5e-143 506.5
Cec09g0868 . 1 593 Core DNA Replication Machinery Family AT3G25100 76.2 3.3e-257 884.4
Cec10g2063 . 12 783 Core DNA Replication Machinery Family AT3G09660 73.8 0.0e+00 1109.4
Cec09g1700 . 22 420 Core DNA Replication Machinery Family AT2G14050 85.2 4.6e-196 681.4
Cec09g1698 . 9 242 Core DNA Replication Machinery Family AT2G14050 67.9 1.7e-86 317.4
Cec02g1251 . 1926 2304 Core DNA Replication Machinery Family AT2G20980 56.2 6.5e-108 387.9
Cec09g0268 . 1 192 Core DNA Replication Machinery Family AT1G80190 67.5 1.0e-72 270.0
Cec11g0642 . 5 188 Core DNA Replication Machinery Family AT1G19080 68.5 1.9e-70 262.3
Cec11g0642 . 5 188 Core DNA Replication Machinery Family AT3G55490 68.5 1.9e-70 262.3
Cec05g0169 . 15 164 Core DNA Replication Machinery Family AT5G49010 65.3 1.1e-49 193.4
Cec02g1303 . 9 1536 Core DNA Replication Machinery Family AT5G67100 60.4 0.0e+00 1744.6
Cec01g1709 . 118 740 Core DNA Replication Machinery Family AT1G67630 60.5 2.1e-214 742.3
Cec06g0212 . 1 447 Core DNA Replication Machinery Family AT1G67320 64.0 2.9e-182 635.2
Cec08g0101 . 196 639 Core DNA Replication Machinery Family AT5G41880 65.0 2.2e-176 615.5
Cec04g1199 . 1 1086 Core DNA Replication Machinery Family AT5G63960 80.7 0.0e+00 1797.7
Cec10g1767 . 1 438 Core DNA Replication Machinery Family AT2G42120 75.6 1.3e-205 712.6
Cec06g0212 . 1 447 Core DNA Replication Machinery Family AT1G67320 64.0 2.9e-182 635.2
Cec01g0547 . 1 127 Core DNA Replication Machinery Family AT1G09815 61.5 4.9e-38 154.1
Cec02g2314 . 1 2095 Core DNA Replication Machinery Family AT1G08260 71.6 0.0e+00 2988.0
Cec09g2157 . 83 2096 Core DNA Replication Machinery Family AT1G08260 68.2 0.0e+00 2788.4
Cec02g2314 . 25 2202 Core DNA Replication Machinery Family AT2G27120 68.2 0.0e+00 2955.6
Cec09g2157 . 106 2203 Core DNA Replication Machinery Family AT2G27120 65.1 0.0e+00 2751.1
Cec01g1812 . 681 1116 Core DNA Replication Machinery Family AT5G22110 71.1 3.1e-184 641.7
Cec02g2368 . 74 998 Core DNA Replication Machinery Family AT5G22010 63.2 7.7e-306 1046.6
Cec10g0359 . 1 331 Core DNA Replication Machinery Family AT1G63160 91.3 2.8e-173 604.7
Cec04g0586 . 1 354 Core DNA Replication Machinery Family AT5G27740 85.0 4.1e-178 620.9
Cec11g1645 . 63 381 Core DNA Replication Machinery Family AT1G21690 81.6 1.6e-144 509.2
Cec08g0611 . 1 363 Core DNA Replication Machinery Family AT1G77470 76.3 1.3e-155 546.2
Cec11g0165 . 26 607 Core DNA Replication Machinery Family AT2G06510 67.7 3.0e-245 844.7
Cec10g0110 . 32 703 Core DNA Replication Machinery Family AT2G06510 50.3 3.4e-196 681.8
Cec06g1758 . 1 623 Core DNA Replication Machinery Family AT5G08020 67.9 1.8e-247 852.0
Cec10g0110 . 10 812 Core DNA Replication Machinery Family AT5G45400 50.3 5.1e-227 784.6
Cec06g1758 . 1 618 Core DNA Replication Machinery Family AT5G61000 65.6 1.5e-239 825.9
Cec10g0110 . 5 798 Core DNA Replication Machinery Family AT4G19130 53.4 1.5e-225 779.6
Cec03g1851 . 1 568 Core DNA Replication Machinery Family AT5G26680 58.5 5.8e-168 587.4
Cec05g0315 . 1 1110 Core DNA Replication Machinery Family AT1G08840 52.5 3.3e-300 1028.1
Cec07g1686 . 1 282 Core DNA Replication Machinery Family AT2G25100 66.7 7.7e-108 387.1
Cec02g2268 . 2 762 Core DNA Replication Machinery Family AT1G08130 69.2 8.7e-298 1019.6
Cec02g2268 . 162 762 Core DNA Replication Machinery Family AT1G49250 69.1 3.3e-242 834.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006601 1 2 1 1 1 1 1 1 1 1 1 1 1 1 0 2 1 2 1 1 1 1 1 2 2 1 1 3 2 1 37