Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec03g1851 ATGGGCATCAAGGGTTTAACCAAGCTTTTAGCTGATAATGCCCCCAAGGGCATGAAGGAGCAGAAGTTCGAAACCTATTTCGGCCGCAAAATCGCAATTGATGCCAGCATGAGTATTTATCAATTTCTTATTGTCGTGGGAAGAAGTGGGACCGAGATGCTGACCAACGAAGCTGGTGAAGTCACTAGCCACTTGCAAGGGATGTTTAACCGGACAATAAGGCTTCTCGAAGCTGGAATTAAGCCAGTCTATGTCTTTGATGGAAAGCCTCCTGATTTGAAAAAACAAGAACTTGCAAAACGTTATTCAAAAAGAGTAGATGCTACCGAGGACCTAGCAGATGCTATCGAGGTTGGCAACAAGGAGGACATTGAGAAATTTAGTAAAAGGACGGTGAAGGTTACAAAGCAGCACAATGATGACTGTAAAAGACTCTTGAGGCTCATGGGAGTGCCTGTGATCGAGGCTCCCTCAGAAGCTGAGGCACAATGTGCTGTGCTTTGCAAGTTAGGAAAGGTTTATGCTGTGGCGTCAGAAGACATGGATTCACTAACATTTGGATCTCCCAGATTTCTTCGTCATTTAATGGATCCCAGCTCAAGGAAGATCCCAGTTATGGAATTTGAAGTGGCTAAGATTTTGGAGGAGCTGAACCTCACCATGGATCAGTTTATCGATTTGTGCATTCTTTCTGGATGTGATTATTGTGACAATATCCGAGGTATAGGGGGGCAGACTGCTCTAAAGCTTATCCGTCAACATGGGTCTATAGAAACTATATTAGAGAACATAAATAAAGAGAGAAGGCAAGATGGCTTCATTCCCAACCCACAATCCGATTGGACCAACTACAGGACAAAATTGATCTACCAAGCTTCAATTGGTAATCTTGATGTGGAGGATTTTCATGATTGGATCAAGAATATAGAAAACTTCTTGGATTACAAGAACACATGGGAGGAAAAGGTTGCGTTGAAGCTCAAAGGTGGAGATGTTCATAGGATGAAAAGATCAAATCTTAGTTTCAGTTTGGAAGATCTGGATGGCTTAAAAGTAATTAATTCCACTGATCTCGATGGAATTATTGCTGTTGGCCCTAATGTGGTTGATCCTCTCTTTTCTATTGATGATATTTTACCACAAAAAGAACCGCAAGAAGAAGCTAAGCATTCAAAGGGGATTCTTCTTCTGAATTTTTCATCTTCTAAAACTACAGTCTACCAGGAATCTTGTACTTGTCTATTGATTTTCTCTTCACATTTGATAAGCCTCCTCGTCATTTCAAAGCAGTATCAGTACCAAATTCCAGATGATTGGCCTTATCAAGAGGCCCGACAGCTTTTTAAAGAACCACTAGTATGTACTGACGAAGAGCAGCTTGACATTAAGTGGACTACTCCAGATGAAGAAGGCTTATTAACATTTTTGGTGAATGAGAATGGGTTCAACAGTGAAAGAGTGACAAAGGCAGTAGAAAAAATTAAAGCAGCCAAGAACAAGTCATCACAGGGCCGGATGGAATCATTTTTCAAGCCCGTCACTAATCCTTCAGTATCCATTAAGCGAAAGGTAAACAAATGTGTACTTAGGTCTCCTAAACCAGGAGCCCAACATAAAGTCTCCCCACAAGCATTTTATTCGTCAAGGACGAATGCCATTGGCAGCCTAGGCATGTCAATGTTAGACCATTCCTCCAAGTACTCGGGGTCAGGGCTATTAGTTATGGCTGTCTGCTTCGATAAATAA 1746 41.58 MGIKGLTKLLADNAPKGMKEQKFETYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGEVTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKRVDATEDLADAIEVGNKEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEAPSEAEAQCAVLCKLGKVYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDNIRGIGGQTALKLIRQHGSIETILENINKERRQDGFIPNPQSDWTNYRTKLIYQASIGNLDVEDFHDWIKNIENFLDYKNTWEEKVALKLKGGDVHRMKRSNLSFSLEDLDGLKVINSTDLDGIIAVGPNVVDPLFSIDDILPQKEPQEEAKHSKGILLLNFSSSKTTVYQESCTCLLIFSSHLISLLVISKQYQYQIPDDWPYQEARQLFKEPLVCTDEEQLDIKWTTPDEEGLLTFLVNENGFNSERVTKAVEKIKAAKNKSSQGRMESFFKPVTNPSVSIKRKVNKCVLRSPKPGAQHKVSPQAFYSSRTNAIGSLGMSMLDHSSKYSGSGLLVMAVCFDK 581
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 36847550 36858549 - CePI673135_03g018510.1 Cec03g1851 199475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec03g1851 581 SUPERFAMILY PIN domain-like 2 234 IPR029060 -
Cec03g1851 581 SMART HhH_4 221 254 IPR008918 GO:0003677(InterPro)|GO:0003824(InterPro)
Cec03g1851 581 FunFam Flap endonuclease 1 10 222 - -
Cec03g1851 581 Hamap Flap endonuclease 1 [fen]. 1 343 IPR023426 GO:0016788(InterPro)
Cec03g1851 581 FunFam Flap endonuclease 1 219 286 - -
Cec03g1851 581 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 219 517 IPR036279 -
Cec03g1851 581 ProSitePatterns XPG protein signature 2. 150 164 IPR019974 GO:0016788(InterPro)
Cec03g1851 581 Gene3D - 10 222 - -
Cec03g1851 581 Pfam XPG N-terminal domain 1 107 IPR006085 GO:0004518(InterPro)
Cec03g1851 581 SMART xpgn3 1 108 IPR006085 GO:0004518(InterPro)
Cec03g1851 581 CDD H3TH_FEN1-Euk 222 268 - -
Cec03g1851 581 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 167 187 IPR006084 -
Cec03g1851 581 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 28 42 IPR006084 -
Cec03g1851 581 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 82 101 IPR006084 -
Cec03g1851 581 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 224 239 IPR006084 -
Cec03g1851 581 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 146 163 IPR006084 -
Cec03g1851 581 SMART xpgineu 147 219 IPR006086 GO:0004518(InterPro)
Cec03g1851 581 Pfam XPG I-region 150 234 IPR006086 GO:0004518(InterPro)
Cec03g1851 581 SMART 53exo3 29 305 IPR002421 GO:0003677(InterPro)|GO:0008409(InterPro)
Cec03g1851 581 Gene3D - 223 291 - -
Cec03g1851 581 CDD PIN_FEN1 4 219 - -
Cec03g1851 581 ProSitePatterns XPG protein signature 1. 80 94 IPR019974 GO:0016788(InterPro)
Cec03g1851 581 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 539 IPR006084 GO:0008409(PANTHER)|GO:0017108(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec03g1851 Cec-Chr3:36847550 Cec10g1458 Cec-Chr10:28914054 8.20E-11 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec03g1851 K04799 - csv:101204273 523.087