Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g0149 ATGGCTTCCCCCTTCAAACCTCCATTGTTACTCTTTTTGGCCTTCGCTTTCTTCATTTTGGGTTCTAGTTCATCTGAGGAATCGACCCTTTTGACCTTCAAAGCCTCCATTAAAGATTCAACAAACTCTCTCTCCAACTGGGTTTCTTCTTCTCAGACCCATTTCTGTAATTGGACTGGAATTTCTTGTGCCAACTCTTCTCCTTCTTTGCTTTCGGTTTCCGCCATTGATCTTCAGGGTTTGAACCTTTCTGGGGAAATTTCATCTTCTCTTTGTGACCTCCCTCGTTTGGCCCATCTTAATCTTGCGGATAATCGGTTTAATCAGCCGATTCCTCTTCATCTCTCGCAGTGCAGCTCGTTGGAGACTTTGAATCTGAGTAATAATCTTATTTGGGGAACGATCCCAGATCAGATTTCTCTGTTTGGTTCTTTGCGAGTGCTTGATTTAGGGAAGAATCACATTGAAGGGAAGATTCCTGAGGGCATTGGGGCTTTGAATAATCTACAAATTCTCAATCTCAGAAGCAACTTGATTTCTGGTACAGTTCCTTCTGTTGTCTTTCATAATCTGACTGAACTTCTTGTTGTTGATTTGTCTGAAAATTCTTATCTGTTGAGTGATATTCCTAGTGAGATTGGGAAGCTTGATAAACTTGAGGAGTTATTGCTTCACAGCTCTGGTTTCTATGGTGAAATCCCTTCTTCTTTGTTGGGTTTGAAAAGTTTGAGTGTTTTGGATCTTTCACAGAACAATCTCACTGGGAAACTCCCTGAAATGTTGGGTTCTTCTTTGAAGAATTTGGTGTCTTTTGATGTTTCTGAGAATAAGCTTGTGGGGTCTTTCCCAAATGGGTTTTGTAGTGGAAAAGGCCTTGTGAGTCTTAGTGTTCATACCAATTTTTTCACTGGGAGTTTGCCTAATTCCTTGAACCAGTGCTTGAATCTTGAGAGGTTTCAAGTTCAGAACAACGGGTTTTCTGAGGATTTTCCTAAAGCTTTGTGGTCATTGCCTAAGATTAAGCTCATCAGAGCTGAAAACAATGGTTTCTCTGGTGAAATTCCAGAGTCTATATCTATGGCTGCTCAGCTTGAGCAAGTTCAGCTTGATAACAACAGTTTTTCAAGTAAAATACCTCGGGGTCTCGGGTCTATTCGAAGCTTATATCGATTCTCTGTGTCGCTCAATCGCTTTTATGGCGAATTGCCACCAAACTTCTGTGATTCACCATTAATGAGTATAATTAATTTGTCACACAATTCTCTTTCCGGTCGAATTCCCGAGCCGAAAAACTGCAAGAAACTGGTCTCTTTGTCCTTAGCAGGCAATAGTCTTACTGGAGGAATTCCTACTTCCCTTGCATATCTACCTGTGTTAACTTATCTTGATCTTTCTGATAACAATCTCACTGGTTCGATCCCTCAAGAACTTGAAAACCTAAAGCTTGCACTCTTTAATGTTTCGTTCAATCAACTATCGGGCGCTGTTCCCTTCTCTTTGATTTCGGGGCTACCAGCTTCATTCCTGCAAGGAAATCCTGATCTTTGTGGCCCTGGTTTGCAAACTCCTTGTTCTCAGGGCCATCCAACAAACCATATGTATAGACTTAACAAAATGACATGTGCCCTCATCTCTCTAGCTTGTGTTTTAGGAGTTCTGAGTTTAGCTGCTGGGTTCATTCTGTATTATCGATCCTACAAACCGAAATCCCGAATCGATAACTGGCATTCAGTCTACTTCTATCCTCTTAGAATCAGTGAGCATGAGTTGATCATGGGGATGAATGAGAAAACTGCACAAGGATGTGGAGGAGCTTTTGGCCAAGTGTTCATTTTAAGCTTACCAAGCCGTGAACTGATTGCCGTAAAGAAACTCGTTAATTTTGGGAGTCGTTCATGGAAGTCGTTGAAAGCTGAGGTCAAGACATTGGCCAAGATCAGGCACAAAAACATCATCAAAATTCTTGGGTTTTGCCATTCTGATGATGCCATTTTTCTGATTTATGAATTCTTACACAAAGGAAGCTTGGCTGACTTGATATGCAGAAATGACTCTTGTCTCAATTGGAATGTGAGACTGAGAATTGCCACTGAGGTTGCTCAAGGACTAGCTTACATTCACAATGACTATGTCCCACATTTACTTCATCGAAATGTCAAATCGTCCAACATTCTATTGGACGCCGACTTTGTCCCAAAGCTCATGGATTTTGCTCTTCACCATATCATTGGAGAGTCGGCATTTCAGTCGACAGTAGCTTCGGAATCTTCTCATTCCTGCTACATTGCACCAGAATATAAATACAACAAAAAGGCAACAGAGCAAATGGATGTGTACAGCTTTGGTGTAGTGTTGCTAGAGCTGGTGACTGGTAGACAAGCTGAGCGCTCGGAATCAACGGACTCTCTCGATGTCGTCCAGTGGGTGAGAAGGAAGGTGAACATAGCCAATGGAGCTTCCCAAGTCTTGGACTCGAGCATCTCGGAACATTGTCAACGACAAATGCTGGAAGCTCTAGACATTGCCCTCCAATGCACTTCTATAATGCCTGAAAAACGACCGTCGATGCTCGAAGTTGTCAAGGCCCTTCAATTGGTTGGATCAACGACAAACCTTCACGATGCAGCCTTCTCGGTTGCAGAGGATAGTTCGGTTTCAAGCAAAAGACCTCCTCTTGCTCCATGA 2685 42.35 MASPFKPPLLLFLAFAFFILGSSSSEESTLLTFKASIKDSTNSLSNWVSSSQTHFCNWTGISCANSSPSLLSVSAIDLQGLNLSGEISSSLCDLPRLAHLNLADNRFNQPIPLHLSQCSSLETLNLSNNLIWGTIPDQISLFGSLRVLDLGKNHIEGKIPEGIGALNNLQILNLRSNLISGTVPSVVFHNLTELLVVDLSENSYLLSDIPSEIGKLDKLEELLLHSSGFYGEIPSSLLGLKSLSVLDLSQNNLTGKLPEMLGSSLKNLVSFDVSENKLVGSFPNGFCSGKGLVSLSVHTNFFTGSLPNSLNQCLNLERFQVQNNGFSEDFPKALWSLPKIKLIRAENNGFSGEIPESISMAAQLEQVQLDNNSFSSKIPRGLGSIRSLYRFSVSLNRFYGELPPNFCDSPLMSIINLSHNSLSGRIPEPKNCKKLVSLSLAGNSLTGGIPTSLAYLPVLTYLDLSDNNLTGSIPQELENLKLALFNVSFNQLSGAVPFSLISGLPASFLQGNPDLCGPGLQTPCSQGHPTNHMYRLNKMTCALISLACVLGVLSLAAGFILYYRSYKPKSRIDNWHSVYFYPLRISEHELIMGMNEKTAQGCGGAFGQVFILSLPSRELIAVKKLVNFGSRSWKSLKAEVKTLAKIRHKNIIKILGFCHSDDAIFLIYEFLHKGSLADLICRNDSCLNWNVRLRIATEVAQGLAYIHNDYVPHLLHRNVKSSNILLDADFVPKLMDFALHHIIGESAFQSTVASESSHSCYIAPEYKYNKKATEQMDVYSFGVVLLELVTGRQAERSESTDSLDVVQWVRRKVNIANGASQVLDSSISEHCQRQMLEALDIALQCTSIMPEKRPSMLEVVKALQLVGSTTNLHDAAFSVAEDSSVSSKRPPLAP 894
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5935032 5938587 - CePI673135_04g001490.1 Cec04g0149 199631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g0149 894 Pfam Leucine Rich Repeat 242 263 IPR001611 GO:0005515(InterPro)
Cec04g0149 894 SUPERFAMILY L domain-like 24 473 - -
Cec04g0149 894 Gene3D Ribonuclease Inhibitor 188 266 IPR032675 -
Cec04g0149 894 FunFam Leucine-rich repeat family protein 25 184 - -
Cec04g0149 894 FunFam - 589 670 - -
Cec04g0149 894 ProSiteProfiles Leucine-rich repeat profile. 458 481 IPR001611 GO:0005515(InterPro)
Cec04g0149 894 ProSiteProfiles Protein kinase domain profile. 595 866 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec04g0149 894 SMART LRR_typ_2 191 216 IPR003591 -
Cec04g0149 894 SMART LRR_typ_2 456 480 IPR003591 -
Cec04g0149 894 SMART LRR_typ_2 94 118 IPR003591 -
Cec04g0149 894 SMART LRR_typ_2 240 264 IPR003591 -
Cec04g0149 894 SMART LRR_typ_2 142 165 IPR003591 -
Cec04g0149 894 SMART LRR_typ_2 166 190 IPR003591 -
Cec04g0149 894 SMART LRR_typ_2 265 289 IPR003591 -
Cec04g0149 894 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 671 871 - -
Cec04g0149 894 Gene3D Phosphorylase Kinase; domain 1 602 671 - -
Cec04g0149 894 PANTHER OS04G0122200 PROTEIN 39 131 IPR051809 -
Cec04g0149 894 Gene3D Ribonuclease Inhibitor 23 187 IPR032675 -
Cec04g0149 894 Gene3D Transferase(Phosphotransferase) domain 1 672 883 - -
Cec04g0149 894 SUPERFAMILY L domain-like 204 531 - -
Cec04g0149 894 Pfam Leucine rich repeat N-terminal domain 24 63 IPR013210 -
Cec04g0149 894 FunFam Probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 264 527 - -
Cec04g0149 894 Pfam Leucine rich repeat 120 179 IPR001611 GO:0005515(InterPro)
Cec04g0149 894 Pfam Leucine rich repeat 434 492 IPR001611 GO:0005515(InterPro)
Cec04g0149 894 SUPERFAMILY Protein kinase-like (PK-like) 604 870 IPR011009 -
Cec04g0149 894 Gene3D Ribonuclease Inhibitor 267 527 IPR032675 -
Cec04g0149 894 Pfam Protein tyrosine and serine/threonine kinase 604 863 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cec04g0149 894 ProSiteProfiles Leucine-rich repeat profile. 120 142 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g0149 Cec-Chr4:5935032 Cec03g0616 Cec-Chr3:6581015 1.40E-57 dispersed
Cec04g0147 Cec-Chr4:5923541 Cec04g0149 Cec-Chr4:5935032 9.30E-11 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71880 PF00069 Pkinase 2.60E-38 CL0016 Cec PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g0149 - - - 0.0