Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g0167 ATGGGAGACCCATATTCAAACTCATCAGCAAGTGTTCTAAAATTCAACTCCCTTCACCACCATTTTTCCCCATCACAACCTTCAAATTCTACCCCACACCTCAACATGTCTCACAATTGCTTCTCTTACCCCTACCTGAACCCGAACCCGCATCCGCCTCCATCTCCACCGCTCCGTGAGGCTCTGCCGCTTCTCGGGCTGATGTCTCCCCCCGAGCAGCAGCAGGAGCAAGAAGAAGAAGACGACGGCGGAGGCGGGAGAGATGAGGAGGAATCGGTGACGGTGGCGTTGCACATAGGGCTACCGAGCCCTAGCGCGGCAGAGATAGCATCTTTGATGTGTGGTTCTTCATCTGAGATTGATCATGTTGGTGATGGAGATCATAGCAATAGTAGTAATAATAATCAAGATCATGATTTAGGGCAGTCCACCAAAACCCTAATAAAGGGGCAGTATTGGATCCCTACTCCTTCTCAAATTCTCATTGGTCCTACTCAATTCTCTTGCCCTGTTTGCTTCAAAACCTTCAATCGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCACAGTACAGAAAAGGCCCAGAGTCCCTCCGGGGCACGCAGCCAACGGGAATGCTACGACTTCCATGTTACTGCTGCGCACCGGGGTGTCGCAACAACATAGACCACCCTCGAGCCAAACCCTTGAAGGACTTCAGAACACTGCAAACGCATTACAAGCGCAAGCACGGCCTGAAGCCCTTCATGTGTCGAAAGTGCGGTAAGGCGTTTGCCGTGCGCGGGGACTGGCGGACGCACGAGAAGAATTGTGGCAAGCTTTGGTACTGCATTTGTGGCTCGGATTTCAAACACAAGCGCTCTTTGAAGGACCATGTCAAGGCCTTCGGTAACGACCACGCCGCCTATGGTGGGGGCGGGATTGATGGGTTCGGAGACGAGGAAGATGAGCCTGCTTCAGAAGTCGAGCAGGATAATGATGAGTGA 993 51.96 MGDPYSNSSASVLKFNSLHHHFSPSQPSNSTPHLNMSHNCFSYPYLNPNPHPPPSPPLREALPLLGLMSPPEQQQEQEEEDDGGGGRDEEESVTVALHIGLPSPSAAEIASLMCGSSSEIDHVGDGDHSNSSNNNQDHDLGQSTKTLIKGQYWIPTPSQILIGPTQFSCPVCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGLKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHVKAFGNDHAAYGGGGIDGFGDEEDEPASEVEQDNDE 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6582323 6585212 - CePI673135_04g001670.1 Cec04g0167 199649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g0167 330 ProSiteProfiles Zinc finger C2H2 type domain profile. 167 194 IPR013087 -
Cec04g0167 330 MobiDBLite consensus disorder prediction 312 330 - -
Cec04g0167 330 Gene3D Classic Zinc Finger 214 304 - -
Cec04g0167 330 MobiDBLite consensus disorder prediction 70 91 - -
Cec04g0167 330 FunFam zinc finger protein WIP2-like 166 189 - -
Cec04g0167 330 Gene3D Classic Zinc Finger 166 189 - -
Cec04g0167 330 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 250 274 - -
Cec04g0167 330 ProSiteProfiles Zinc finger C2H2 type domain profile. 251 271 IPR013087 -
Cec04g0167 330 Pfam Zinc finger, C2H2 type 167 186 IPR013087 -
Cec04g0167 330 ProSitePatterns Zinc finger C2H2 type domain signature. 169 189 IPR013087 -
Cec04g0167 330 PANTHER ZINC FINGER PROTEIN WIP2 30 328 IPR043584 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010468(PANTHER)|GO:0010468(InterPro)|GO:0048856(PANTHER)
Cec04g0167 330 MobiDBLite consensus disorder prediction 308 330 - -
Cec04g0167 330 SUPERFAMILY beta-beta-alpha zinc fingers 236 271 IPR036236 -
Cec04g0167 330 FunFam Zinc finger protein WIP2 220 302 - -
Cec04g0167 330 SUPERFAMILY beta-beta-alpha zinc fingers 163 189 IPR036236 -
Cec04g0167 330 MobiDBLite consensus disorder prediction 127 141 - -
Cec04g0167 330 SMART c2h2final6 167 189 IPR013087 -
Cec04g0167 330 SMART c2h2final6 251 271 IPR013087 -
Cec04g0167 330 MobiDBLite consensus disorder prediction 118 141 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g1316 Cec-Chr1:24607268 Cec04g0167 Cec-Chr4:6582323 1.50E-84 dispersed
Cec04g0167 Cec-Chr4:6582323 Cec10g1741 Cec-Chr10:32086938 1.60E-99 dispersed
Cec04g0167 Cec-Chr4:6582323 Cec02g2442 Cec-Chr2:41628104 1.10E-97 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29274 None None None None Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g0167 - - - 0.0