Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g0193 ATGGGAGACGGCAATAACACCAATAGAGGCCTTGTCTCCGCCAACGCCGCAAACCGGAACACCACCAACAACAGCAACAACGGCAGCCACCACAAGAAGCCCGAGTGGCTGCAGCAGTACGATCTAATTGGGAAGATCGGAGAAGGAACCTATGGCCTCGTGTTCCTTGCTAAAATCAAACCGCCTTCGCCAAGTCGCGGCAAGTCAATTGCCATCAAAAAATTTAAGCAATCTAAGGACGGTGATGGCGTCTCCCCAACTGCCATCCGCGAAATTATGTTACTGCGGGAAATATCACACGAAAATGTTGTCAAGCTTGTAAATGTTCATATCAACCATGCAGATATGTCGCTGTATTTAGCTTTTGATTATGCTGAACACGACCTCTACGAAATCATTAGACATCATCGGGACAAGGCTAACCATCCCCTTAATCAGTACACCGTTAAATCCTTGCTCTGGCAACTTCTCAATGGTTTGAACTATCTCCACAGCAATTGGATCATTCATCGCGATTTAAAGCCATCAAATATTTTGGTTATGGGTGAAGGAGAAGAACAAGGAGTGGTTAAAATAGCTGATTTTGGACTTGCAAGAATATACCAAGCTCCCTTGAAGCCATTATCTGAAAATGGAGTTGTTGTCACCATTTGGTATCGAGCACCTGAACTTCTCCTTGGAGCAAAGCACTATACTAGTGCTGTTGATATGTGGGCTGTTGGATGTATTTTTGCCGAGCTTTTGACGTTGAAGCCATTATTTCAAGGTCAAGAAGTCAAAGGGACACCAAATCCTTTCCAGCTTGATCAACTCGACAAGATTTTTAAGGTTTTAGGCCATCCCACACTAGAGAAGTGGCCAACACTTGCTAATCTTCCACATTGGCAACAAGATCTACAGCACATCCAGGGGCATAAATATGACAATGCTGGATTGTATAATGTTGTCCACCTTTCTCCAAAAAGTCCTGCATACGATCTTCTGTCCAAAATGCTGGAGTATGATCCTCGAAAGCGTATAACAGCAGCCCAAGCCCTAGAGCATGAGTATTTTCGTTTAGAACCTCTTCCGGGATACAATGCTCTGGTACCGATCCAACCTGGAGAGAAGGTCATTAATTATCCAACTCGCCCTGTGGACACAACCACAGATTTTGAGGGAACAACTAACCTTCAACCTTCACAAACGGTAACATCTGGAAATACTGTAAACATGCAAGCTGCTCATATGGCAAGATCTGTCCCTCGGGCAATGGGAGTTGGCATGCCTAGGATGCCGCATCAGAGCATGGCTGCCTACAACCTTGCATCTCAGGCTGGTATGGGTATGAATCCTGGTGGCATCCCTATGCAGCGAGGTGTCTCTTCCCAAGCTCATCAGCAACAACAGTTAAGGAGAAAAGATCCTGGAATGGGAATGTCTGGTTATCCTCCCCAGCAGAAACAACAAAGACGGTCTGAAATTACTTTGTCGGCTTTGCCCAAAATTTTTCCATACGCATCTACAAAGCTGAGGTGGCGTTTGCTTGTTGATTTATCTGCAACCCGAGGTTCATCAACTCACCCGAATAATTTAAGATCCAAGCATGTTGCTTGA 1596 45.11 MGDGNNTNRGLVSANAANRNTTNNSNNGSHHKKPEWLQQYDLIGKIGEGTYGLVFLAKIKPPSPSRGKSIAIKKFKQSKDGDGVSPTAIREIMLLREISHENVVKLVNVHINHADMSLYLAFDYAEHDLYEIIRHHRDKANHPLNQYTVKSLLWQLLNGLNYLHSNWIIHRDLKPSNILVMGEGEEQGVVKIADFGLARIYQAPLKPLSENGVVVTIWYRAPELLLGAKHYTSAVDMWAVGCIFAELLTLKPLFQGQEVKGTPNPFQLDQLDKIFKVLGHPTLEKWPTLANLPHWQQDLQHIQGHKYDNAGLYNVVHLSPKSPAYDLLSKMLEYDPRKRITAAQALEHEYFRLEPLPGYNALVPIQPGEKVINYPTRPVDTTTDFEGTTNLQPSQTVTSGNTVNMQAAHMARSVPRAMGVGMPRMPHQSMAAYNLASQAGMGMNPGGIPMQRGVSSQAHQQQQLRRKDPGMGMSGYPPQQKQQRRSEITLSALPKIFPYASTKLRWRLLVDLSATRGSSTHPNNLRSKHVA 531
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7449367 7461246 + CePI673135_04g001930.1 Cec04g0193 199675

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g0193 531 SUPERFAMILY Protein kinase-like (PK-like) 35 352 IPR011009 -
Cec04g0193 531 ProSitePatterns Protein kinases ATP-binding region signature. 46 74 IPR017441 GO:0005524(InterPro)
Cec04g0193 531 Pfam Protein kinase domain 40 351 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec04g0193 531 FunFam Putative cyclin-dependent kinase E-1 125 364 - -
Cec04g0193 531 PANTHER CELL DIVISION PROTEIN KINASE 39 351 IPR050108 GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0016592(PANTHER)
Cec04g0193 531 ProSiteProfiles Protein kinase domain profile. 40 351 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec04g0193 531 CDD STKc_CDK8_like 39 351 - -
Cec04g0193 531 ProSitePatterns Serine/Threonine protein kinases active-site signature. 168 180 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cec04g0193 531 Gene3D Transferase(Phosphotransferase) domain 1 123 362 - -
Cec04g0193 531 MobiDBLite consensus disorder prediction 452 487 - -
Cec04g0193 531 FunFam Cyclin-dependent kinase e-1 28 124 - -
Cec04g0193 531 Gene3D Phosphorylase Kinase; domain 1 19 122 - -
Cec04g0193 531 SMART serkin_6 40 351 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g0193 K02208 - - csv:101203984 943.725
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g0193 Cec-Chr4:7449367 Cec08g1784 Cec-Chr8:28927488 2.10E-69 dispersed
Cec06g0249 Cec-Chr6:2687338 Cec04g0193 Cec-Chr4:7449367 2.50E-07 transposed
Cec03g0935 Cec-Chr3:12622756 Cec04g0193 Cec-Chr4:7449367 8.30E-12 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g1238 . . . Bda03g00570 . . . . . . . Cma07g01312 . Car07g01259 . . . . . . . . . . Cla04g00115 Cam04g0113 Cec04g0193 Cco04g0188 Clacu04g0155 Cmu04g0183 Cre04g0167 . . . . . . . . . . . . . . . . . . Cmo07g01355 . . . . . . . . . . . . . . . . . . . . . . . Cme08g01932
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec05g2384 . 53 340 Core Cell Cycle Gene Families AT3G48750 85.8 4.7e-148 520.8
Cec04g0733 . 1 300 Core Cell Cycle Gene Families AT3G48750 56.5 1.6e-95 346.3
Cec11g1943 . 11 307 Core Cell Cycle Gene Families AT3G48750 53.0 3.3e-93 338.6
Cec04g0733 . 1 305 Core Cell Cycle Gene Families AT3G54180 84.8 7.9e-154 540.0
Cec11g1943 . 11 309 Core Cell Cycle Gene Families AT3G54180 66.0 9.2e-118 420.2
Cec05g2384 . 53 336 Core Cell Cycle Gene Families AT3G54180 53.5 1.4e-89 326.6
Cec04g0733 . 1 305 Core Cell Cycle Gene Families AT2G38620 71.5 4.5e-123 437.6
Cec11g1943 . 11 309 Core Cell Cycle Gene Families AT2G38620 57.5 2.8e-93 338.6
Cec11g1943 . 1 307 Core Cell Cycle Gene Families AT1G76540 84.7 2.3e-156 548.5
Cec04g0733 . 1 300 Core Cell Cycle Gene Families AT1G76540 66.7 2.4e-118 422.2
Cec05g2384 . 53 336 Core Cell Cycle Gene Families AT1G76540 53.8 1.5e-91 333.2
Cec11g1943 . 8 307 Core Cell Cycle Gene Families AT1G20930 89.0 4.4e-160 560.8
Cec04g0733 . 1 303 Core Cell Cycle Gene Families AT1G20930 67.1 3.4e-120 428.3
Cec05g2384 . 53 336 Core Cell Cycle Gene Families AT1G20930 55.5 1.9e-94 342.8
Cec02g2538 . 79 593 Core Cell Cycle Gene Families AT5G10270 75.3 8.8e-219 756.5
Cec10g1422 . 23 484 Core Cell Cycle Gene Families AT5G10270 77.3 1.7e-209 725.7
Cec03g1707 . 840 1158 Core Cell Cycle Gene Families AT5G10270 51.6 1.0e-97 354.4
Cec05g0684 . 105 421 Core Cell Cycle Gene Families AT5G10270 52.9 2.2e-97 353.2
Cec05g1107 . 123 439 Core Cell Cycle Gene Families AT5G10270 54.7 2.2e-97 353.2
Cec08g0186 . 137 453 Core Cell Cycle Gene Families AT5G10270 53.0 8.5e-97 351.3
Cec11g0067 . 150 466 Core Cell Cycle Gene Families AT5G10270 52.1 5.5e-96 348.6
Cec02g1848 . 172 488 Core Cell Cycle Gene Families AT5G10270 52.6 2.1e-95 346.7
Cec03g0381 . 93 409 Core Cell Cycle Gene Families AT5G10270 52.6 8.0e-95 344.7
Cec02g1707 . 101 419 Core Cell Cycle Gene Families AT5G10270 50.7 2.6e-93 339.7
Cec02g1847 . 128 444 Core Cell Cycle Gene Families AT5G10270 50.3 5.4e-91 332.0
Cec02g2538 . 143 592 Core Cell Cycle Gene Families AT5G64960 72.9 8.1e-179 623.6
Cec10g1422 . 87 537 Core Cell Cycle Gene Families AT5G64960 71.2 2.5e-172 602.1
Cec02g1848 . 226 488 Core Cell Cycle Gene Families AT5G64960 53.6 7.1e-82 301.6
Cec05g1107 . 177 439 Core Cell Cycle Gene Families AT5G64960 54.3 2.1e-81 300.1
Cec03g1707 . 894 1158 Core Cell Cycle Gene Families AT5G64960 50.7 7.8e-81 298.1
Cec11g0067 . 204 466 Core Cell Cycle Gene Families AT5G64960 52.9 1.3e-80 297.4
Cec05g0684 . 159 421 Core Cell Cycle Gene Families AT5G64960 51.8 2.3e-80 296.6
Cec08g0186 . 191 453 Core Cell Cycle Gene Families AT5G64960 53.2 5.1e-80 295.4
Cec02g1847 . 182 444 Core Cell Cycle Gene Families AT5G64960 52.9 1.1e-79 294.3
Cec03g0381 . 147 409 Core Cell Cycle Gene Families AT5G64960 52.2 3.3e-79 292.7
Cec06g1651 . 4 414 Core Cell Cycle Gene Families AT1G73690 73.7 1.4e-171 599.4
Cec06g1651 . 12 348 Core Cell Cycle Gene Families AT1G66750 77.2 5.6e-156 547.4
Cec05g2384 . 56 333 Core Cell Cycle Gene Families AT1G66750 50.4 2.8e-75 279.3
Cec06g1651 . 8 415 Core Cell Cycle Gene Families AT1G18040 75.2 1.9e-173 605.5
Cec04g0193 . 32 484 Core Cell Cycle Gene Families AT5G63610 78.0 4.1e-202 701.0
Cec11g0246 . 1 482 Core Cell Cycle Gene Families AT4G28980 62.9 1.5e-175 612.8
Cec08g0619 . 5 498 Core Cell Cycle Gene Families AT1G44110 56.6 1.7e-144 509.6
Cec09g0240 . 347 625 Core Cell Cycle Gene Families AT1G44110 54.8 5.1e-88 322.0
Cec05g1888 . 206 472 Core Cell Cycle Gene Families AT1G44110 55.1 5.8e-84 308.5
Cec05g2257 . 124 403 Core Cell Cycle Gene Families AT1G44110 52.5 1.9e-82 303.5
Cec08g1681 . 85 373 Core Cell Cycle Gene Families AT1G44110 50.2 2.1e-78 290.0
Cec08g1329 . 334 595 Core Cell Cycle Gene Families AT1G44110 53.4 2.9e-75 279.6
Cec09g0240 . 346 621 Core Cell Cycle Gene Families AT1G77390 51.4 1.1e-76 284.3
Cec05g1888 . 206 472 Core Cell Cycle Gene Families AT1G77390 52.1 1.1e-74 277.7
Cec05g2257 . 129 401 Core Cell Cycle Gene Families AT1G77390 50.2 7.5e-73 271.6
Cec08g1329 . 334 591 Core Cell Cycle Gene Families AT1G77390 50.8 1.2e-67 254.2
Cec05g1888 . 16 484 Core Cell Cycle Gene Families AT5G25380 53.0 5.9e-118 421.4
Cec08g1329 . 167 607 Core Cell Cycle Gene Families AT5G25380 51.7 3.1e-103 372.5
Cec09g0240 . 345 625 Core Cell Cycle Gene Families AT5G25380 63.0 1.0e-98 357.5
Cec08g0619 . 216 491 Core Cell Cycle Gene Families AT5G25380 55.1 9.8e-81 297.7
Cec05g2257 . 128 396 Core Cell Cycle Gene Families AT5G25380 51.7 1.4e-74 277.3
Cec02g0707 . 119 343 Core Cell Cycle Gene Families AT5G25380 51.8 8.1e-59 224.9
Cec05g1888 . 44 422 Core Cell Cycle Gene Families AT5G11300 53.6 6.5e-95 344.7
Cec08g1329 . 330 545 Core Cell Cycle Gene Families AT5G11300 70.4 6.6e-79 291.6
Cec08g0619 . 207 436 Core Cell Cycle Gene Families AT5G11300 55.7 4.0e-68 255.8
Cec05g2257 . 124 340 Core Cell Cycle Gene Families AT5G11300 55.3 2.1e-61 233.4
Cec08g1681 . 92 307 Core Cell Cycle Gene Families AT5G11300 51.9 6.8e-60 228.4
Cec02g0707 . 119 285 Core Cell Cycle Gene Families AT5G11300 51.8 2.2e-42 170.2
Cec09g0240 . 311 625 Core Cell Cycle Gene Families AT1G15570 64.7 2.3e-117 419.5
Cec08g0619 . 188 495 Core Cell Cycle Gene Families AT1G15570 52.4 2.6e-81 299.7
Cec02g0707 . 119 347 Core Cell Cycle Gene Families AT1G15570 50.9 7.0e-58 221.9
Cec09g0240 . 126 625 Core Cell Cycle Gene Families AT1G80370 51.2 2.8e-118 422.5
Cec08g0619 . 217 496 Core Cell Cycle Gene Families AT1G80370 55.7 3.5e-81 299.3
Cec05g2257 . 124 401 Core Cell Cycle Gene Families AT1G80370 51.4 9.0e-77 284.6
Cec08g1681 . 92 370 Core Cell Cycle Gene Families AT1G80370 51.6 4.9e-75 278.9
Cec02g0707 . 119 348 Core Cell Cycle Gene Families AT1G80370 51.5 2.7e-57 219.9
Cec08g1681 . 5 372 Core Cell Cycle Gene Families AT5G43080 58.3 1.8e-114 409.5
Cec05g2257 . 30 406 Core Cell Cycle Gene Families AT5G43080 57.0 1.0e-112 403.7
Cec05g1888 . 208 477 Core Cell Cycle Gene Families AT5G43080 53.7 5.6e-79 291.6
Cec08g0619 . 218 498 Core Cell Cycle Gene Families AT5G43080 51.2 5.6e-79 291.6
Cec09g0240 . 348 625 Core Cell Cycle Gene Families AT5G43080 51.3 2.2e-75 279.6
Cec08g1681 . 1 372 Core Cell Cycle Gene Families AT1G47210 59.1 1.3e-123 439.9
Cec05g2257 . 30 406 Core Cell Cycle Gene Families AT1G47210 54.2 4.8e-113 404.8
Cec05g1888 . 208 477 Core Cell Cycle Gene Families AT1G47210 52.2 1.2e-76 283.9
Cec09g0240 . 348 620 Core Cell Cycle Gene Families AT1G47210 51.1 1.4e-75 280.4
Cec08g1329 . 331 597 Core Cell Cycle Gene Families AT1G47210 50.2 6.6e-70 261.5
Cec05g2257 . 124 404 Core Cell Cycle Gene Families AT1G47220 58.7 5.7e-94 341.3
Cec08g1681 . 78 372 Core Cell Cycle Gene Families AT1G47220 56.6 1.4e-92 336.7
Cec05g2257 . 30 406 Core Cell Cycle Gene Families AT1G47230 57.4 4.2e-117 418.3
Cec08g1681 . 1 372 Core Cell Cycle Gene Families AT1G47230 57.1 1.1e-114 410.2
Cec02g0707 . 66 351 Core Cell Cycle Gene Families AT1G47230 53.5 4.2e-77 285.4
Cec08g0619 . 219 500 Core Cell Cycle Gene Families AT1G47230 50.5 2.7e-76 282.7
Cec09g0240 . 350 620 Core Cell Cycle Gene Families AT1G47230 51.6 1.1e-72 270.8
Cec05g1888 . 209 474 Core Cell Cycle Gene Families AT1G47230 52.0 2.4e-72 269.6
Cec04g0653 . 1 449 Core Cell Cycle Gene Families AT4G37490 53.8 3.5e-115 412.1
Cec04g0653 . 1 342 Core Cell Cycle Gene Families AT5G06150 53.8 2.0e-81 299.7
Cec02g2373 . 822 1020 Core Cell Cycle Gene Families AT5G06150 63.8 4.9e-64 241.9
Cec04g1797 . 170 344 Core Cell Cycle Gene Families AT5G06150 53.1 2.5e-44 176.4
Cec04g0653 . 1 406 Core Cell Cycle Gene Families AT3G11520 57.2 2.5e-104 375.9
Cec04g1797 . 171 397 Core Cell Cycle Gene Families AT3G11520 52.0 4.4e-61 232.3
Cec02g2373 . 730 1127 Core Cell Cycle Gene Families AT2G26760 52.5 3.7e-108 388.7
Cec04g1797 . 8 440 Core Cell Cycle Gene Families AT2G17620 59.5 8.8e-127 450.7
Cec11g1912 . 181 580 Core Cell Cycle Gene Families AT2G17620 52.2 1.9e-105 379.8
Cec04g1797 . 24 397 Core Cell Cycle Gene Families AT4G35620 58.2 3.0e-102 369.0
Cec11g1912 . 174 537 Core Cell Cycle Gene Families AT4G35620 53.4 7.6e-90 327.8
Cec02g2373 . 853 1079 Core Cell Cycle Gene Families AT4G35620 50.9 4.0e-54 209.1
Cec11g1912 . 145 580 Core Cell Cycle Gene Families AT1G20610 63.3 2.3e-143 505.8
Cec04g1797 . 1 440 Core Cell Cycle Gene Families AT1G20610 56.6 1.5e-121 433.3
Cec11g1912 . 148 477 Core Cell Cycle Gene Families AT1G76310 63.8 8.3e-104 374.0
Cec04g1797 . 1 336 Core Cell Cycle Gene Families AT1G76310 53.2 5.8e-81 298.1
Cec02g2373 . 849 1016 Core Cell Cycle Gene Families AT1G76310 52.4 5.8e-41 165.2
Cec09g2170 . 12 329 Core Cell Cycle Gene Families AT1G70210 65.6 3.1e-111 398.7
Cec05g2734 . 1 327 Core Cell Cycle Gene Families AT1G70210 63.3 7.5e-105 377.5
Cec04g1542 . 41 335 Core Cell Cycle Gene Families AT2G22490 55.3 1.3e-83 307.0
Cec05g1197 . 14 335 Core Cell Cycle Gene Families AT4G34160 50.8 2.1e-79 293.1
Cec02g0664 . 59 292 Core Cell Cycle Gene Families AT4G34160 52.6 4.3e-61 232.3
Cec05g2245 . 388 635 Core Cell Cycle Gene Families AT5G67260 51.4 9.0e-65 244.6
Cec04g1542 . 56 275 Core Cell Cycle Gene Families AT5G65420 60.3 1.8e-69 259.6
Cec08g1180 . 131 328 Core Cell Cycle Gene Families AT5G65420 56.5 4.1e-61 231.9
Cec04g1542 . 54 233 Core Cell Cycle Gene Families AT5G10440 58.6 2.1e-55 212.6
Cec08g1180 . 126 304 Core Cell Cycle Gene Families AT5G10440 53.9 4.5e-50 194.9
Cec04g1340 . 149 417 Core Cell Cycle Gene Families AT5G27620 63.6 6.4e-92 334.3
Cec01g1390 . 1 86 Core Cell Cycle Gene Families AT2G27960 91.9 7.2e-44 172.9
Cec02g2278 . 1 86 Core Cell Cycle Gene Families AT2G27960 90.7 1.0e-42 169.1
Cec01g1390 . 1 83 Core Cell Cycle Gene Families AT2G27970 85.5 1.3e-39 158.7
Cec02g2278 . 1 76 Core Cell Cycle Gene Families AT2G27970 92.1 3.9e-39 157.1
Cec05g2932 . 300 1319 Core Cell Cycle Gene Families AT3G12280 72.0 0.0e+00 1417.5
Cec09g0589 . 2 486 Core Cell Cycle Gene Families AT1G02970 59.9 5.4e-160 561.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008356 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 2 2 1 1 1 1 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71883 PF00069 Pkinase 2.40E-68 CL0016 Cec PK