Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g0193 ATGGGAGACGGCAATAACACCAATAGAGGCCTTGTCTCCGCCAACGCCGCAAACCGGAACACCACCAACAACAGCAACAACGGCAGCCACCACAAGAAGCCCGAGTGGCTGCAGCAGTACGATCTAATTGGGAAGATCGGAGAAGGAACCTATGGCCTCGTGTTCCTTGCTAAAATCAAACCGCCTTCGCCAAGTCGCGGCAAGTCAATTGCCATCAAAAAATTTAAGCAATCTAAGGACGGTGATGGCGTCTCCCCAACTGCCATCCGCGAAATTATGTTACTGCGGGAAATATCACACGAAAATGTTGTCAAGCTTGTAAATGTTCATATCAACCATGCAGATATGTCGCTGTATTTAGCTTTTGATTATGCTGAACACGACCTCTACGAAATCATTAGACATCATCGGGACAAGGCTAACCATCCCCTTAATCAGTACACCGTTAAATCCTTGCTCTGGCAACTTCTCAATGGTTTGAACTATCTCCACAGCAATTGGATCATTCATCGCGATTTAAAGCCATCAAATATTTTGGTTATGGGTGAAGGAGAAGAACAAGGAGTGGTTAAAATAGCTGATTTTGGACTTGCAAGAATATACCAAGCTCCCTTGAAGCCATTATCTGAAAATGGAGTTGTTGTCACCATTTGGTATCGAGCACCTGAACTTCTCCTTGGAGCAAAGCACTATACTAGTGCTGTTGATATGTGGGCTGTTGGATGTATTTTTGCCGAGCTTTTGACGTTGAAGCCATTATTTCAAGGTCAAGAAGTCAAAGGGACACCAAATCCTTTCCAGCTTGATCAACTCGACAAGATTTTTAAGGTTTTAGGCCATCCCACACTAGAGAAGTGGCCAACACTTGCTAATCTTCCACATTGGCAACAAGATCTACAGCACATCCAGGGGCATAAATATGACAATGCTGGATTGTATAATGTTGTCCACCTTTCTCCAAAAAGTCCTGCATACGATCTTCTGTCCAAAATGCTGGAGTATGATCCTCGAAAGCGTATAACAGCAGCCCAAGCCCTAGAGCATGAGTATTTTCGTTTAGAACCTCTTCCGGGATACAATGCTCTGGTACCGATCCAACCTGGAGAGAAGGTCATTAATTATCCAACTCGCCCTGTGGACACAACCACAGATTTTGAGGGAACAACTAACCTTCAACCTTCACAAACGGTAACATCTGGAAATACTGTAAACATGCAAGCTGCTCATATGGCAAGATCTGTCCCTCGGGCAATGGGAGTTGGCATGCCTAGGATGCCGCATCAGAGCATGGCTGCCTACAACCTTGCATCTCAGGCTGGTATGGGTATGAATCCTGGTGGCATCCCTATGCAGCGAGGTGTCTCTTCCCAAGCTCATCAGCAACAACAGTTAAGGAGAAAAGATCCTGGAATGGGAATGTCTGGTTATCCTCCCCAGCAGAAACAACAAAGACGGTCTGAAATTACTTTGTCGGCTTTGCCCAAAATTTTTCCATACGCATCTACAAAGCTGAGGTGGCGTTTGCTTGTTGATTTATCTGCAACCCGAGGTTCATCAACTCACCCGAATAATTTAAGATCCAAGCATGTTGCTTGA 1596 45.11 MGDGNNTNRGLVSANAANRNTTNNSNNGSHHKKPEWLQQYDLIGKIGEGTYGLVFLAKIKPPSPSRGKSIAIKKFKQSKDGDGVSPTAIREIMLLREISHENVVKLVNVHINHADMSLYLAFDYAEHDLYEIIRHHRDKANHPLNQYTVKSLLWQLLNGLNYLHSNWIIHRDLKPSNILVMGEGEEQGVVKIADFGLARIYQAPLKPLSENGVVVTIWYRAPELLLGAKHYTSAVDMWAVGCIFAELLTLKPLFQGQEVKGTPNPFQLDQLDKIFKVLGHPTLEKWPTLANLPHWQQDLQHIQGHKYDNAGLYNVVHLSPKSPAYDLLSKMLEYDPRKRITAAQALEHEYFRLEPLPGYNALVPIQPGEKVINYPTRPVDTTTDFEGTTNLQPSQTVTSGNTVNMQAAHMARSVPRAMGVGMPRMPHQSMAAYNLASQAGMGMNPGGIPMQRGVSSQAHQQQQLRRKDPGMGMSGYPPQQKQQRRSEITLSALPKIFPYASTKLRWRLLVDLSATRGSSTHPNNLRSKHVA 531
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7449367 7461246 + CePI673135_04g001930.1 Cec04g0193 199675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g0193 531 SUPERFAMILY Protein kinase-like (PK-like) 35 352 IPR011009 -
Cec04g0193 531 ProSitePatterns Protein kinases ATP-binding region signature. 46 74 IPR017441 GO:0005524(InterPro)
Cec04g0193 531 Pfam Protein kinase domain 40 351 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec04g0193 531 FunFam Putative cyclin-dependent kinase E-1 125 364 - -
Cec04g0193 531 PANTHER CELL DIVISION PROTEIN KINASE 39 351 IPR050108 GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0016592(PANTHER)
Cec04g0193 531 ProSiteProfiles Protein kinase domain profile. 40 351 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec04g0193 531 CDD STKc_CDK8_like 39 351 - -
Cec04g0193 531 ProSitePatterns Serine/Threonine protein kinases active-site signature. 168 180 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cec04g0193 531 Gene3D Transferase(Phosphotransferase) domain 1 123 362 - -
Cec04g0193 531 MobiDBLite consensus disorder prediction 452 487 - -
Cec04g0193 531 FunFam Cyclin-dependent kinase e-1 28 124 - -
Cec04g0193 531 Gene3D Phosphorylase Kinase; domain 1 19 122 - -
Cec04g0193 531 SMART serkin_6 40 351 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g0193 Cec-Chr4:7449367 Cec08g1784 Cec-Chr8:28927488 2.10E-69 dispersed
Cec06g0249 Cec-Chr6:2687338 Cec04g0193 Cec-Chr4:7449367 2.50E-07 transposed
Cec03g0935 Cec-Chr3:12622756 Cec04g0193 Cec-Chr4:7449367 8.30E-12 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71883 PF00069 Pkinase 2.40E-68 CL0016 Cec PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g0193 K02208 - csv:101203984 943.725