Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g0248 ATGGCAGAGGCGGCGGCAGCCGGTTTCTGGCGGAAGCTATTAACCGGACGGTGGTTGATGCTATTTGCATCACTAACAATCATGGCACTGAACGGATCAGGCTACATGTTAGGGCTCTACTCCCCCCGCATCAAATTCATTTTTGGTTACGATCAGTCGGCTCTTAATTTGATCAGCTTCTTCAAGGACTTGGGTGGCAATCTTGGGGTGGTTTCCGGCGTCGTCTACGAGGTGGCGCCACCATGGGTGGTTCTCTCGGTCGGCGCCGTCCTCAACTTCTTCGCCTATTTCATGCTCTGGTTGGCAGTTTCCGGCCGGACCGCCGCACCGGCGCTGTGGCTGATGTGCGTTTATATGGGCGTTGCTGCTAACTCATTGTCTTTCGCTAATACGGCGGCTTTGGTTACTTGTGTTCGTAACTTTCCTCTTCATCGTGGCTGCCTTCTTGGCCTTCTTAAAGGACCAGGATAG 471 53.5 MAEAAAAGFWRKLLTGRWLMLFASLTIMALNGSGYMLGLYSPRIKFIFGYDQSALNLISFFKDLGGNLGVVSGVVYEVAPPWVVLSVGAVLNFFAYFMLWLAVSGRTAAPALWLMCVYMGVAANSLSFANTAALVTCVRNFPLHRGCLLGLLKGPG 156
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9540164 9541207 + CePI673135_04g002480.1 Cec04g0248 199730

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g0248 156 SUPERFAMILY MFS general substrate transporter 7 151 IPR036259 -
Cec04g0248 156 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 16 154 - GO:0016020(PANTHER)
Cec04g0248 156 Pfam Nodulin-like 17 154 IPR010658 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g0248 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g0248 Cec-Chr4:9540164 Cec04g0337 Cec-Chr4:13173505 9.10E-82 dispersed
Cec04g0248 Cec-Chr4:9540164 Cec08g0813 Cec-Chr8:19977796 3.00E-48 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec07g1203 . 1 754 Nodulin-like Gene Family AT4G19180 60.9 5.4e-249 857.4
Cec11g1652 . 74 334 Nodulin-like Gene Family AT3G45870 70.5 2.3e-99 359.0
Cec09g1993 . 12 371 Nodulin-like Gene Family AT3G28050 58.8 9.5e-114 407.1
Cec09g1993 . 127 333 Nodulin-like Gene Family AT3G28080 50.2 9.5e-51 197.2
Cec10g0259 . 2 335 Nodulin-like Gene Family AT5G47470 61.2 5.0e-105 378.3
Cec01g0410 . 1 338 Nodulin-like Gene Family AT5G47470 57.8 1.9e-101 366.3
Cec09g1993 . 10 333 Nodulin-like Gene Family AT5G40230 54.3 7.2e-93 337.8
Cec09g1993 . 3 333 Nodulin-like Gene Family AT5G40240 52.3 6.7e-91 331.3
Cec10g1459 . 12 335 Nodulin-like Gene Family AT5G40240 50.5 5.1e-83 305.1
Cec05g2047 . 16 274 Nodulin-like Gene Family AT3G53210 60.6 5.1e-85 311.2
Cec08g1510 . 16 282 Nodulin-like Gene Family AT3G53210 57.3 4.3e-84 308.1
Cec04g0983 . 99 360 Nodulin-like Gene Family AT2G37450 59.4 5.3e-82 301.2
Cec07g0356 . 98 332 Nodulin-like Gene Family AT2G37450 57.0 1.1e-68 256.9
Cec07g0357 . 98 334 Nodulin-like Gene Family AT2G37450 55.7 1.3e-67 253.4
Cec11g1619 . 104 336 Nodulin-like Gene Family AT2G37450 54.9 1.7e-64 243.0
Cec09g2113 . 100 333 Nodulin-like Gene Family AT2G37450 50.6 7.5e-60 227.6
Cec04g0983 . 12 338 Nodulin-like Gene Family AT2G37460 67.3 4.4e-122 434.9
Cec07g0357 . 11 334 Nodulin-like Gene Family AT2G37460 57.7 1.9e-101 366.3
Cec07g0356 . 11 332 Nodulin-like Gene Family AT2G37460 57.1 2.6e-98 355.9
Cec11g1619 . 16 343 Nodulin-like Gene Family AT2G37460 54.4 1.4e-96 350.1
Cec08g0581 . 23 350 Nodulin-like Gene Family AT2G37460 50.8 1.0e-94 344.0
Cec09g2113 . 10 333 Nodulin-like Gene Family AT2G37460 55.1 2.8e-92 335.9
Cec09g2115 . 8 331 Nodulin-like Gene Family AT2G37460 52.8 2.8e-92 335.9
Cec04g0647 . 13 362 Nodulin-like Gene Family AT2G37460 50.4 3.1e-91 332.4
Cec10g1660 . 12 342 Nodulin-like Gene Family AT2G37460 52.7 3.2e-88 322.4
Cec08g1510 . 4 395 Nodulin-like Gene Family AT1G75500 72.2 1.4e-160 562.8
Cec05g2047 . 1 388 Nodulin-like Gene Family AT1G75500 73.0 5.9e-154 540.8
Cec06g1656 . 7 333 Nodulin-like Gene Family AT1G75500 62.5 8.3e-116 414.1
Cec05g2741 . 13 366 Nodulin-like Gene Family AT1G60050 51.7 7.7e-95 344.4
Cec07g0357 . 8 361 Nodulin-like Gene Family AT2G39510 59.9 2.2e-118 422.5
Cec07g0356 . 12 341 Nodulin-like Gene Family AT2G39510 61.6 1.7e-113 406.4
Cec04g0983 . 13 345 Nodulin-like Gene Family AT2G39510 60.5 3.5e-111 398.7
Cec09g2115 . 8 343 Nodulin-like Gene Family AT2G39510 56.2 3.6e-108 388.7
Cec09g2113 . 13 334 Nodulin-like Gene Family AT2G39510 58.6 5.3e-104 374.8
Cec11g1619 . 18 335 Nodulin-like Gene Family AT2G39510 57.6 2.0e-98 356.3
Cec04g0647 . 16 339 Nodulin-like Gene Family AT2G39510 51.4 3.0e-91 332.4
Cec10g1660 . 16 349 Nodulin-like Gene Family AT2G39510 50.7 1.2e-90 330.5
Cec11g1365 . 13 350 Nodulin-like Gene Family AT2G39510 50.6 7.5e-90 327.8
Cec08g0581 . 22 277 Nodulin-like Gene Family AT4G08290 63.8 1.2e-87 320.1
Cec11g1619 . 14 263 Nodulin-like Gene Family AT4G08290 53.4 1.7e-73 273.1
Cec11g1619 . 12 355 Nodulin-like Gene Family AT4G08300 67.3 5.5e-125 444.5
Cec08g0581 . 27 376 Nodulin-like Gene Family AT4G08300 51.0 1.9e-93 339.7
Cec04g0983 . 13 332 Nodulin-like Gene Family AT4G08300 50.2 5.5e-85 311.6
Cec02g0082 . 9 260 Nodulin-like Gene Family AT5G64700 60.7 1.3e-77 286.6
Cec04g1253 . 1 236 Nodulin-like Gene Family AT5G64700 52.9 2.6e-60 229.2
Cec11g1317 . 1 368 Nodulin-like Gene Family AT4G30420 53.8 2.5e-104 375.9
Cec11g1365 . 6 336 Nodulin-like Gene Family AT5G07050 72.0 9.4e-139 490.3
Cec10g1660 . 10 342 Nodulin-like Gene Family AT5G07050 68.0 3.7e-127 451.8
Cec04g0647 . 10 339 Nodulin-like Gene Family AT5G07050 64.6 3.0e-121 432.2
Cec11g1619 . 18 336 Nodulin-like Gene Family AT5G07050 52.1 5.4e-94 341.7
Cec09g2115 . 8 331 Nodulin-like Gene Family AT5G07050 50.2 6.0e-85 311.6
Cec04g0647 . 13 357 Nodulin-like Gene Family AT3G56620 58.6 1.2e-106 383.6
Cec11g1365 . 14 338 Nodulin-like Gene Family AT3G56620 56.7 5.2e-99 358.2
Cec05g2741 . 1 372 Nodulin-like Gene Family AT1G70260 55.4 3.4e-106 382.1
Cec02g1558 . 1 332 Nodulin-like Gene Family AT1G09380 58.4 1.0e-110 397.1
Cec01g1112 . 47 355 Nodulin-like Gene Family AT1G09380 62.3 7.5e-106 380.9
Cec04g0647 . 13 352 Nodulin-like Gene Family AT2G40900 60.9 9.0e-110 394.0
Cec10g1660 . 12 347 Nodulin-like Gene Family AT2G40900 55.7 1.3e-105 380.2
Cec11g1365 . 14 333 Nodulin-like Gene Family AT2G40900 57.2 3.8e-100 362.1
Cec06g1656 . 1 351 Nodulin-like Gene Family AT3G18200 68.2 7.1e-128 454.1
Cec08g1510 . 16 360 Nodulin-like Gene Family AT3G18200 57.7 1.1e-107 387.1
Cec05g2047 . 16 354 Nodulin-like Gene Family AT3G18200 54.6 3.7e-100 362.1
Cec11g1619 . 12 355 Nodulin-like Gene Family AT1G44800 64.9 2.3e-123 439.1
Cec08g0581 . 27 369 Nodulin-like Gene Family AT1G44800 51.3 2.6e-95 345.9
Cec04g0647 . 12 339 Nodulin-like Gene Family AT1G44800 50.3 4.1e-88 322.0
Cec11g1652 . 158 428 Nodulin-like Gene Family AT5G45370 68.7 2.2e-102 369.0
Cec11g1619 . 12 313 Nodulin-like Gene Family AT1G21890 65.7 1.1e-114 410.2
Cec08g0581 . 26 327 Nodulin-like Gene Family AT1G21890 50.5 1.5e-87 320.1
Cec10g1660 . 15 318 Nodulin-like Gene Family AT1G21890 52.9 1.8e-85 313.2
Cec04g0983 . 11 311 Nodulin-like Gene Family AT1G21890 50.6 4.5e-81 298.5
Cec07g1352 . 1 565 Nodulin-like Gene Family AT1G80530 59.2 7.6e-187 650.6
Cec07g1222 . 4 417 Nodulin-like Gene Family AT4G19450 66.7 3.7e-146 515.0
Cec06g0065 . 22 420 Nodulin-like Gene Family AT4G19450 58.2 8.2e-130 460.7
Cec06g1845 . 7 538 Nodulin-like Gene Family AT1G74780 58.7 1.1e-179 626.7
Cec06g1846 . 6 520 Nodulin-like Gene Family AT1G74780 56.4 9.5e-163 570.5
Cec06g1847 . 13 422 Nodulin-like Gene Family AT1G74780 56.1 3.2e-126 449.1
Cec02g1240 . 9 540 Nodulin-like Gene Family AT4G34950 70.2 6.2e-221 763.8
Cec02g0442 . 30 535 Nodulin-like Gene Family AT4G34950 66.1 4.9e-202 701.0
Cec11g0736 . 6 592 Nodulin-like Gene Family AT5G14120 68.8 2.5e-233 805.1
Cec02g1240 . 1 386 Nodulin-like Gene Family AT2G16660 70.1 1.6e-151 532.7
Cec02g0442 . 30 389 Nodulin-like Gene Family AT2G16660 68.4 1.1e-139 493.4
Cec05g2349 . 1 584 Nodulin-like Gene Family AT2G39210 67.7 1.4e-226 782.7
Cec08g0813 . 28 603 Nodulin-like Gene Family AT2G39210 62.6 4.0e-210 728.0
Cec05g2351 . 3 564 Nodulin-like Gene Family AT2G39210 63.9 1.5e-201 699.5
Cec10g2008 . 1 579 Nodulin-like Gene Family AT2G39210 59.1 3.1e-194 675.2
Cec03g0262 . 19 575 Nodulin-like Gene Family AT2G39210 59.8 1.9e-188 656.0
Cec04g1084 . 18 579 Nodulin-like Gene Family AT2G39210 56.5 7.1e-183 637.5
Cec05g2350 . 15 494 Nodulin-like Gene Family AT2G39210 59.7 2.3e-165 579.3
Cec03g0251 . 16 557 Nodulin-like Gene Family AT2G39210 51.3 1.5e-153 540.0
Cec04g0337 . 12 526 Nodulin-like Gene Family AT2G39210 52.0 2.2e-152 536.2
Cec10g2011 . 1 275 Nodulin-like Gene Family AT2G39210 58.9 3.9e-88 322.8
Cec03g0253 . 48 289 Nodulin-like Gene Family AT2G39210 52.8 1.2e-68 258.1
Cec04g0248 . 12 154 Nodulin-like Gene Family AT2G39210 60.1 6.7e-48 189.1
Cec07g1222 . 7 565 Nodulin-like Gene Family AT3G01630 52.8 2.7e-147 519.2
Cec06g0065 . 28 567 Nodulin-like Gene Family AT3G01630 50.4 8.3e-141 497.7
Cec11g0736 . 6 429 Nodulin-like Gene Family AT3G01930 69.2 1.5e-166 582.8
Cec06g1845 . 10 537 Nodulin-like Gene Family AT1G18940 54.9 1.4e-166 583.2
Cec06g1846 . 3 511 Nodulin-like Gene Family AT1G18940 54.1 2.3e-153 539.3
Cec06g1847 . 7 422 Nodulin-like Gene Family AT1G18940 52.6 1.3e-119 427.2
Cec06g1845 . 6 539 Nodulin-like Gene Family AT2G34350 56.0 7.4e-160 560.8
Cec06g1846 . 8 522 Nodulin-like Gene Family AT2G34350 54.2 4.1e-150 528.5
Cec06g1847 . 11 422 Nodulin-like Gene Family AT2G34350 52.6 8.5e-116 414.5
Cec03g0262 . 15 569 Nodulin-like Gene Family AT2G28120 70.3 3.0e-223 771.5
Cec05g2349 . 10 569 Nodulin-like Gene Family AT2G28120 61.8 2.2e-197 685.6
Cec08g0813 . 24 588 Nodulin-like Gene Family AT2G28120 58.9 1.7e-186 649.4
Cec10g2008 . 19 555 Nodulin-like Gene Family AT2G28120 60.7 2.2e-181 632.5
Cec03g0251 . 13 561 Nodulin-like Gene Family AT2G28120 57.4 1.3e-178 623.2
Cec05g2351 . 9 563 Nodulin-like Gene Family AT2G28120 57.4 3.1e-175 612.1
Cec04g1084 . 16 573 Nodulin-like Gene Family AT2G28120 56.0 2.1e-171 599.4
Cec03g0259 . 8 581 Nodulin-like Gene Family AT2G28120 53.7 4.7e-168 588.2
Cec03g0257 . 2 544 Nodulin-like Gene Family AT2G28120 51.4 1.5e-161 566.6
Cec03g0258 . 3 548 Nodulin-like Gene Family AT2G28120 50.5 1.5e-153 540.0
Cec04g0337 . 1 529 Nodulin-like Gene Family AT2G28120 51.5 2.2e-149 526.2
Cec05g2350 . 17 515 Nodulin-like Gene Family AT2G28120 51.0 6.5e-141 498.0
Cec10g2011 . 17 280 Nodulin-like Gene Family AT2G28120 59.1 5.2e-82 302.4
Cec04g0248 . 1 154 Nodulin-like Gene Family AT2G28120 53.9 1.7e-45 181.0
Cec07g1222 . 4 570 Nodulin-like Gene Family AT1G31470 57.1 3.4e-166 582.0
Cec06g0065 . 28 574 Nodulin-like Gene Family AT1G31470 56.1 3.9e-162 568.5
Cec09g0958 . 27 216 Nodulin-like Gene Family AT1G76800 76.3 7.0e-71 263.8
Cec08g0723 . 17 215 Nodulin-like Gene Family AT1G76800 69.8 5.0e-69 257.7
Cec09g1527 . 8 202 Nodulin-like Gene Family AT1G76800 62.1 5.5e-60 227.6
Cec09g1527 . 9 202 Nodulin-like Gene Family AT3G25190 66.3 2.4e-64 242.3
Cec08g0723 . 23 215 Nodulin-like Gene Family AT3G25190 63.2 7.3e-61 230.7
Cec09g0958 . 34 216 Nodulin-like Gene Family AT3G25190 63.7 9.9e-58 220.3
Cec08g0723 . 20 215 Nodulin-like Gene Family AT1G21140 75.5 5.8e-73 270.8
Cec09g0958 . 29 216 Nodulin-like Gene Family AT1G21140 73.9 6.0e-70 260.8
Cec09g1527 . 7 202 Nodulin-like Gene Family AT1G21140 61.7 1.1e-63 240.0
Cec08g0723 . 20 212 Nodulin-like Gene Family AT3G43630 77.2 2.9e-72 268.5
Cec09g0958 . 29 213 Nodulin-like Gene Family AT3G43630 73.5 1.1e-68 256.5
Cec09g1527 . 7 199 Nodulin-like Gene Family AT3G43630 61.7 1.9e-60 229.2
Cec08g0723 . 20 215 Nodulin-like Gene Family AT3G43660 74.0 6.4e-72 267.3
Cec09g0958 . 25 216 Nodulin-like Gene Family AT3G43660 70.8 6.0e-70 260.8
Cec09g1527 . 7 202 Nodulin-like Gene Family AT3G43660 61.2 1.2e-62 236.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000074 3 8 10 5 4 11 0 10 11 18 9 11 11 13 11 12 10 9 1 10 18 10 13 12 11 11 7 8 9 5 281