Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g0309 ATGTTTCGACCCTATTCATCACCTTCGATTTGTGGTTTTCTAGCTTACAAACACAATTTGTATATCACTGCTATTCCCTCTACCTTCAAGAAGAGCAAGCCCATACAAAAACAATCGAAAGGCATCAACAAACTAAAATGCAGAGTAGATCACTCCAAGAGGGAGAGAGAGAGAGAGAGCAGAATTTCAATCACTGTAGCATCTTATCACTTTCTTCACCGATTTCCCAACCCTTCTTCCGATTTGATTCCTGCCGCAGGTGTAGGGATTTTGCTTCCTGACGAACACTATTGTGCTTGGGGTCGAACGACAACGATATATGTTCATTGGGCAGTTAGTGCTGATGGTCAATTCTTAAGTTGGGCATATCGAATTACTTGGTGTATCAGGCGAGGATTAGAATGGCTGAGTAATCTAAGAGCTGGTCTAGCTTTTTTAAATCTGTGCTGCATCACTGATATGATGGTTAAGGAAAATTTGCTGCAGAGAGTTGATGACAATGCTAAAGAGAATGATTGCTCGAGTATTGGGAATGAAGATTTGGGTTCTCAGTCTCGCCACAGTGTAGGGAAGGAATCCGGGGTCAGTTGTCGTGTGTGTCAATGTATTGAATCTGACAGAAGAGGTGATACTGTTTTAGGATTTCTGGGCATCACTCCTCCAATTATGGAAGCAAGAAAATGTGATGGGGATTCTAAGCCTGAGAAGCAAAGTGCAGACAATGTTTATGATGGTTCTGAGATGAAAAAAGATGTTAAAGGGGATTCTGGTTCAATTAAGTTCATAGGCCCTAATGGGGAGGTTTTCATTTGCAAAGCTGATATCGAAATGGGTTCATGTCATCATGAAGATGTATTAGTGGAGCTTGGGTGTTCTTGCAAGAGTGACCTTGCACTTGTACACTATGCATGTGCTCTCAAGTGGTTTGTCAGCCATGGATCTACAGTTTGTGAAATCTGTGGATGTACTGCAGAAAATATTAGAACTGATGACTTTAGAAAGGTTGTGAGTTCTTTGAAAGAATATGAAGCTTTGAGGGAAAGAACTGTTAGTGGTGAACCTAATCCTATGCAGACTATTGCTGGTACCGATATAGATCCTGATGCTGTTGCTGCTGTCCGCAGGCAGCGGCTAAGTGAAATCTCATTGTGGTTCAGTCCTCATAATTATAGTAGCAACAATAACTCTACTGCAGCCTCCCAGGTTGTTTCTGAACATCTGAATACCATCTCAGAAAATGTTGTTCATTCCGAAAATCCTGCAACCAGGTGGGCTGTTGAGGGTACTGGAATTCTCCTTGCTACAGGGCTGCTTACTGTTACGCTTGCTTGCCTCATAGCTCCTCGTGTGGGGAAGAAAACTGCGAAAAGTGGCCTTCATATTCTTCTTGGAGGAGTTTGTGCGTTAACAGTTGTGGTTTTCTTCCGCTTTTTTGTGCTAACCAGGATAAAATACGGACCTGCACGATACTGGGCCATTTTGTTCGTCTTTTGGTTCCTGGTGTTTGGTATTTGGGCGTCGAGGACACACGCTGCTCATACGACGTAA 1548 42.83 MFRPYSSPSICGFLAYKHNLYITAIPSTFKKSKPIQKQSKGINKLKCRVDHSKRERERESRISITVASYHFLHRFPNPSSDLIPAAGVGILLPDEHYCAWGRTTTIYVHWAVSADGQFLSWAYRITWCIRRGLEWLSNLRAGLAFLNLCCITDMMVKENLLQRVDDNAKENDCSSIGNEDLGSQSRHSVGKESGVSCRVCQCIESDRRGDTVLGFLGITPPIMEARKCDGDSKPEKQSADNVYDGSEMKKDVKGDSGSIKFIGPNGEVFICKADIEMGSCHHEDVLVELGCSCKSDLALVHYACALKWFVSHGSTVCEICGCTAENIRTDDFRKVVSSLKEYEALRERTVSGEPNPMQTIAGTDIDPDAVAAVRRQRLSEISLWFSPHNYSSNNNSTAASQVVSEHLNTISENVVHSENPATRWAVEGTGILLATGLLTVTLACLIAPRVGKKTAKSGLHILLGGVCALTVVVFFRFFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHAAHTT 515
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12090274 12099154 + CePI673135_04g003090.1 Cec04g0309 199791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g0309 515 SUPERFAMILY RING/U-box 288 323 - -
Cec04g0309 515 PANTHER ZINC FINGER, RING-CH-TYPE 179 504 - -
Cec04g0309 515 SMART ringv_2 280 321 IPR011016 GO:0008270(InterPro)
Cec04g0309 515 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 266 330 IPR013083 -
Cec04g0309 515 ProSiteProfiles Zinc finger RING-CH-type profile. 263 327 IPR011016 GO:0008270(InterPro)
Cec04g0309 515 Pfam RING-variant domain 286 320 IPR011016 GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g0309 Cec-Chr4:12090274 Cec10g2171 Cec-Chr10:36177429 9.90E-08 dispersed
Cec04g0309 Cec-Chr4:12090274 Cec11g0670 Cec-Chr11:7427420 6.80E-09 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g0309 - - - 0.0