Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g0469 ATGTTTGCCCCCAAACAAATTCCTCTTCCTCATCCTCAAACACCAAAATCCACCATGGGAAGAGGAAGAGTCGAGATCAAGAAGATTGAGAATATCAACAGCAGACAAGTTACTTTCTCTAAACGCCGTAATGGGTTGATGAAAAAGGCCAAAGAATTATCAGTTCTTTGTGATGCTGAAGTCGCCATTGTTGTCTTCTCCAGCACTGGAAGGCTTTATGAATTCTCCAGCACTAGCATGGAACATACACTTTCAAGGTACAGAGGACAGGGCATGGAGTTGGATTTTGCAAAAGAGACTTTGGACCACCCAACACAACTGCCACCATCTGATTCTGATGGAAAGTCGTCCGAGGAGGAGATCGCAAGGCTAAAGTTAGCATATATGCAGATGAGAGGCCAGGAACTGGATAGTTTGAGCTTTATAGACCTACAAAACTTAGAAAATCAGTTGCGGGAAGGGATCGTATCTATCAAAGACAAGAAGGAGACATTACTTTTGGAGCAGCTCCAAAGGTGTAGGTCACAGCTAGAGGAGTTTCAGCAGAGAAACAATGCAACACTCCTGGAGTCCAGCCCCCTTCAGAGATCCTACCTTTCGGATTCGAAAACCGCTTCTACGAACGAGACTGAGGCCGAGACCGAGGCAGAGGAAAATGACAGCTCAGGAATTTCCTTGCATCTGGGGTTGTCATTGAATGGTCGACAAAAAAGGAAACGATCGGTTGAAGGTGCGAGCAACGACACAACATGCAGTCAAGTAGACTTGGGAAGGGGATGA 780 45.77 MFAPKQIPLPHPQTPKSTMGRGRVEIKKIENINSRQVTFSKRRNGLMKKAKELSVLCDAEVAIVVFSSTGRLYEFSSTSMEHTLSRYRGQGMELDFAKETLDHPTQLPPSDSDGKSSEEEIARLKLAYMQMRGQELDSLSFIDLQNLENQLREGIVSIKDKKETLLLEQLQRCRSQLEEFQQRNNATLLESSPLQRSYLSDSKTASTNETEAETEAEENDSSGISLHLGLSLNGRQKRKRSVEGASNDTTCSQVDLGRG 259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19347343 19351041 + CePI673135_04g004690.1 Cec04g0469 199951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g0469 259 PANTHER SERUM RESPONSE FACTOR HOMOLOG 19 210 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cec04g0469 259 PRINTS MADS domain signature 41 56 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec04g0469 259 PRINTS MADS domain signature 21 41 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec04g0469 259 PRINTS MADS domain signature 56 77 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec04g0469 259 ProSitePatterns MADS-box domain signature. 21 75 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec04g0469 259 MobiDBLite consensus disorder prediction 191 209 - -
Cec04g0469 259 SMART madsneu2 19 78 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec04g0469 259 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 28 75 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec04g0469 259 Coils Coil 144 190 - -
Cec04g0469 259 MobiDBLite consensus disorder prediction 245 259 - -
Cec04g0469 259 SUPERFAMILY SRF-like 20 90 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec04g0469 259 FunFam MADS-box transcription factor MADS-MC 31 102 - -
Cec04g0469 259 Gene3D - 31 99 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec04g0469 259 MobiDBLite consensus disorder prediction 1 20 - -
Cec04g0469 259 Pfam K-box region 119 185 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cec04g0469 259 MobiDBLite consensus disorder prediction 191 259 - -
Cec04g0469 259 CDD MADS_MEF2_like 20 88 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cec04g0469 259 ProSiteProfiles MADS-box domain profile. 19 79 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec04g0469 259 ProSiteProfiles K-box domain profile. 107 198 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g0469 Cec-Chr4:19347343 Cec10g1221 Cec-Chr10:26338971 1.30E-35 dispersed
Cec04g0469 Cec-Chr4:19347343 Cec04g2114 Cec-Chr4:39048396 8.40E-32 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29287 PF01486 K-box 4.60E-10 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g0469 - - - 0.0