Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cec04g0555 | ATGGGTTCTTCTGTTGCTGCAATGGGCATGGTTTCAGACTCCAAATTCCATGTTCTTGCTGTTGATGATAGCGTTATCGATAGGAAATTGATTGAAAGGCTCCTTAAAACCTCCTCTTACCAAGTCACTACGGTTGATTCTGGAAGTAAAGCTTTGGAGTTTCTGGGATATGACCCCGGAAATAACTCGATTCCTTCTGTTTCATCTAACCATCATCATCATCATCAGGAAGTGGATGTGAATCTTGTTATTACTGATTACTGTATGCCTGAGATGACTGGCTATGATTTGTTGAAGAAGATCAAGGGGTCTACAGCTCTGAGAAACATACCTGTTGTGATTATGTCATCTGAGAATGTGCCTGCAAGAATCAATAGATGCTTAGAAGAAGGAGCAGAAGAATTCTTCTTGAAACCGGTCCGACTTTCGGATGTCAACCGGCTTAGACCCCACATGTTGAAAACCAAACTCAAATGTGACAAACCAGAAAAAGCAGTAGACAATGAGCCTGATTCAGGAAGCCAATCCCCAGCACTAGGGCAACAACATCAACAACAACATGAACAAGAACAATTACGACCGCTATCGCAGCAGATCCCGACATCGCTGCAAGATCAAGATCAATTGCAATCTGTACCACTTCTGCCAACACCAACACAGGAGCAAGAACAGTTGCAATTACTCCCGCCAACACCGCCGCAACAATCAAACAACAACAAGAGGAAGGCAATGGAAGATGGACTTTCTCCCGATAGAACAAGGCCTAGATACAATGGTATTACCACCATGGTGTAG | 795 | 43.52 | MGSSVAAMGMVSDSKFHVLAVDDSVIDRKLIERLLKTSSYQVTTVDSGSKALEFLGYDPGNNSIPSVSSNHHHHHQEVDVNLVITDYCMPEMTGYDLLKKIKGSTALRNIPVVIMSSENVPARINRCLEEGAEEFFLKPVRLSDVNRLRPHMLKTKLKCDKPEKAVDNEPDSGSQSPALGQQHQQQHEQEQLRPLSQQIPTSLQDQDQLQSVPLLPTPTQEQEQLQLLPPTPPQQSNNNKRKAMEDGLSPDRTRPRYNGITTMV | 264 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 22848952 | 22850411 | - | CePI673135_04g005550.1 | Cec04g0555 | 200037 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cec04g0555 | 264 | SUPERFAMILY | CheY-like | 14 | 149 | IPR011006 | - | |
| Cec04g0555 | 264 | MobiDBLite | consensus disorder prediction | 156 | 192 | - | - | |
| Cec04g0555 | 264 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 13 | 210 | IPR045279 | GO:0009736(InterPro) | |
| Cec04g0555 | 264 | CDD | REC_typeA_ARR | 18 | 148 | - | - | |
| Cec04g0555 | 264 | ProSiteProfiles | Response regulatory domain profile. | 17 | 153 | IPR001789 | GO:0000160(InterPro) | |
| Cec04g0555 | 264 | MobiDBLite | consensus disorder prediction | 215 | 243 | - | - | |
| Cec04g0555 | 264 | Gene3D | - | 17 | 249 | - | - | |
| Cec04g0555 | 264 | SMART | REC_2 | 16 | 149 | IPR001789 | GO:0000160(InterPro) | |
| Cec04g0555 | 264 | MobiDBLite | consensus disorder prediction | 169 | 192 | - | - | |
| Cec04g0555 | 264 | MobiDBLite | consensus disorder prediction | 215 | 264 | - | - | |
| Cec04g0555 | 264 | Pfam | Response regulator receiver domain | 18 | 144 | IPR001789 | GO:0000160(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cec04g0555 | Cec-Chr4:22848952 | Cec10g1628 | Cec-Chr10:30724162 | 3.60E-54 | dispersed | |
| Cec04g0555 | Cec-Chr4:22848952 | Cec06g1863 | Cec-Chr6:31985770 | 1.20E-41 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 29291 | PF00072 | Response_reg | 1.30E-18 | CL0304 | Cec | TR |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cec04g0555 | K14492 | - | csv:101220999 | 435.261 |