Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g0619 ATGGACTTCTTACAGTCTCTGGATCCTCAAATCCTTCTAGGTTTGGCTGTGGCTGTTTTAGCCCTTGCCGTTGGTGCTTTCTATGTATTATCCTCGTCCAAAAAAAGCAAATCCAGAGGTTGCTTGGATCCAGAGGTTTTCAAGGAGTTTAAACTTGTCAAGCGCCTGCAGCTGAGCCATAATGTGGCGAAGTTTACATTTACACTCCCGAATCCTACGTCAGTTCTAGGTCTTCCCATTGGACAACATATAAGTTGCAGGGGCAAGGATGGCCAAGGTGAAGAGGTTATCAAACCGTACACACCTATTACTTTGGATTCTGATGTTGGATATTTTGAATTGGTCATAAAGATGTATCCTCAAGGAAGGATGTCACACCATTTCCGCCAGATGCGTGTAGGCGATTTTCTTGCTGTAAAGGGGCCCAAGGGGCATTTCAGGTATCAACCCGGCGAGGTCAGAGCATTTGGGATGCTTGCTGGAGGCTCTGGCATTACGCCTATGTATCAAGTTGCTCGAGCAATATTAGAAAATCCAAATGACAAGACGAGGGTACATCTCATTTATGCCAATGTCACCTATGAGGACATTCTCTTAAAGGAGGAGTTGGATCTTCTTGCCAAAAGGTACCCGGATAGCTTCAAGCTCTATTATGTCTTAAACCAGCCTCCTGAAGCGTGGGATGGTGGCGTCGGATTCGTATCGAAGGAGATGATTCAAGCCCACTGCCCTGCTCCTGCTTCTGATATTCAGATTCTAAGGTGTGGACCACCACCAATGAACAAGGCCATGGCTGCTCATCTGGAAGATCTTGGATATACACCTGAGATGCTTTTCATGTTCTGA 846 45.98 MDFLQSLDPQILLGLAVAVLALAVGAFYVLSSSKKSKSRGCLDPEVFKEFKLVKRLQLSHNVAKFTFTLPNPTSVLGLPIGQHISCRGKDGQGEEVIKPYTPITLDSDVGYFELVIKMYPQGRMSHHFRQMRVGDFLAVKGPKGHFRYQPGEVRAFGMLAGGSGITPMYQVARAILENPNDKTRVHLIYANVTYEDILLKEELDLLAKRYPDSFKLYYVLNQPPEAWDGGVGFVSKEMIQAHCPAPASDIQILRCGPPPMNKAMAAHLEDLGYTPEMLFMF 281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24760236 24765728 + CePI673135_04g006190.1 Cec04g0619 200101

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g0619 281 Pfam Oxidoreductase NAD-binding domain 158 264 IPR001433 GO:0016491(InterPro)
Cec04g0619 281 Gene3D - 139 281 IPR039261 -
Cec04g0619 281 FunFam NADH-cytochrome b5 reductase 139 281 - -
Cec04g0619 281 Pfam Oxidoreductase FAD-binding domain 50 148 IPR008333 -
Cec04g0619 281 Gene3D Translation factors 40 138 - -
Cec04g0619 281 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 45 149 IPR017927 GO:0016491(InterPro)
Cec04g0619 281 FunFam NADH-cytochrome b5 reductase 40 139 - -
Cec04g0619 281 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 137 278 IPR039261 -
Cec04g0619 281 PRINTS Cytochrome B5 reductase signature 157 176 - -
Cec04g0619 281 PRINTS Cytochrome B5 reductase signature 251 259 - -
Cec04g0619 281 PRINTS Cytochrome B5 reductase signature 76 87 - -
Cec04g0619 281 PRINTS Cytochrome B5 reductase signature 98 105 - -
Cec04g0619 281 PRINTS Cytochrome B5 reductase signature 195 206 - -
Cec04g0619 281 PRINTS Cytochrome B5 reductase signature 134 148 - -
Cec04g0619 281 PANTHER NADH-CYTOCHROME B5 REDUCTASE 19 281 IPR001834 GO:0004128(PANTHER)|GO:0016491(InterPro)|GO:0022900(PANTHER)
Cec04g0619 281 SUPERFAMILY Riboflavin synthase domain-like 42 150 IPR017938 -
Cec04g0619 281 CDD cyt_b5_reduct_like 50 281 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g0619 K00326 - - csv:101212569 528.094
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g2546 Cec-Chr2:42480680 Cec04g0619 Cec-Chr4:24760236 1.80E-118 dispersed
Cec03g0927 Cec-Chr3:12317838 Cec04g0619 Cec-Chr4:24760236 9.70E-40 dispersed
Cec04g0619 Cec-Chr4:24760236 Cec10g1687 Cec-Chr10:31384645 1.30E-134 dispersed
Cec04g0619 Cec-Chr4:24760236 Cec11g1604 Cec-Chr11:30327135 1.70E-41 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec05g0388 . 1 133 NADPH P450 reductases AT5G53560 67.7 3.2e-51 198.0
Cec01g0020 . 23 138 NADPH P450 reductases AT5G53560 77.6 2.1e-50 195.3
Cec06g0806 . 1 133 NADPH P450 reductases AT5G53560 63.2 5.3e-46 180.6
Cec05g0388 . 1 132 NADPH P450 reductases AT5G48810 64.2 1.7e-47 185.7
Cec06g0806 . 1 133 NADPH P450 reductases AT5G48810 59.3 1.0e-44 176.4
Cec01g0020 . 23 138 NADPH P450 reductases AT5G48810 61.9 2.0e-40 162.2
Cec05g0388 . 22 133 NADPH P450 reductases AT2G32720 83.9 1.6e-50 195.7
Cec06g0806 . 22 133 NADPH P450 reductases AT2G32720 76.8 2.6e-45 178.3
Cec01g0020 . 18 137 NADPH P450 reductases AT2G32720 64.2 3.3e-40 161.4
Cec04g0619 . 2 281 NADPH P450 reductases AT5G17770 81.1 3.3e-130 461.5
Cec10g1687 . 2 280 NADPH P450 reductases AT5G17770 77.8 9.8e-127 449.9
Cec02g2546 . 244 516 NADPH P450 reductases AT5G17770 72.9 2.1e-116 415.6
Cec05g0388 . 1 133 NADPH P450 reductases AT5G53560 67.7 3.2e-51 198.0
Cec01g0020 . 23 138 NADPH P450 reductases AT5G53560 77.6 2.1e-50 195.3
Cec06g0806 . 1 133 NADPH P450 reductases AT5G53560 63.2 5.3e-46 180.6
Cec05g0388 . 1 132 NADPH P450 reductases AT5G48810 64.2 1.7e-47 185.7
Cec06g0806 . 1 133 NADPH P450 reductases AT5G48810 59.3 1.0e-44 176.4
Cec01g0020 . 23 138 NADPH P450 reductases AT5G48810 61.9 2.0e-40 162.2
Cec05g0388 . 22 133 NADPH P450 reductases AT2G32720 83.9 1.6e-50 195.7
Cec06g0806 . 22 133 NADPH P450 reductases AT2G32720 76.8 2.6e-45 178.3
Cec01g0020 . 18 137 NADPH P450 reductases AT2G32720 64.2 3.3e-40 161.4
Cec04g0619 . 2 281 NADPH P450 reductases AT5G17770 81.1 3.3e-130 461.5
Cec10g1687 . 2 280 NADPH P450 reductases AT5G17770 77.8 9.8e-127 449.9
Cec02g2546 . 244 516 NADPH P450 reductases AT5G17770 72.9 2.1e-116 415.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000880 3 3 2 3 3 2 4 3 2 3 3 3 4 3 3 4 3 4 4 2 3 2 2 3 2 1 1 3 5 3 86