Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g0650 ATGAGGGAAGAACACTCGAATTGGTTCTCTAGGTGGGAAGAGGAGCTTCCATCTCCAGATGAATTGATGCCTCTTTCTCAAACCCTAATAACCCCCGATCTAGCTTTGGCTTTTGATATTCAGAATCCCAGCAATAGCAGTCCGCCGTTGCCTTGTCCATCTCCGCCTCTTTCGAATCCTCTGCCTGGCTCTGGCAACGGAATTGCGCAGCCCAACTCGGCGGATTTCGGCGATTCTGCCGATTTGGGCTCCGGCGCCGCCAGCGATGAGCCGGCTCGGACCCTCAAGCGACCACGCCTTGTTTGGACGCCTCAACTCCACAAGCGATTCGTCGATGCTGTTGCTCATTTAGGGATAAAAAATGCCGTCCCCAAGACCATAATGCAGCTCATGAGTGTCGATGGCTTGACCAGAGAGAACGTAGCTAGCCATTTGCAGAAGTACCGCCTCTATCTCAAGCGGATGCAGGGGTTGTCCTCCGGCGGCGGCGGCGGTGGTGGTGGCTTGGTTGCTTCCTCCGATCCCGCCACCGACCATTTGTTTGCTAGCTCCCCAGTTCCACCCCATTTGCTTCACTCTGCTCGCACCAGTTCAGACCATTTCTTGCCCTTTGTTCCCATGGCCACTCTGCAGCAGCACCACCATCACCAGCAGCAGATGGCCGCTGCTGCTGCTGTCGCCGTCCATCCGCAGCTTCAGCCGCCTTATCATCGGCAGGTCGGGCATTTCGGGTCACCGCCAAATGGCCAGTTTGAGCATCCATTTTTAGCTAGACAGTCCCAGCCTATCCATAGAATGGGAGCACCAGTGCCTAATTCAGTTCCTAATTACGTAGAGGATTTGGAATCAGCCAATGCCAGTGGAGGAAGAAAAGTTCTCACCTTATTTCCTACTGGGGATGATTGA 906 54.42 MREEHSNWFSRWEEELPSPDELMPLSQTLITPDLALAFDIQNPSNSSPPLPCPSPPLSNPLPGSGNGIAQPNSADFGDSADLGSGAASDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGLSSGGGGGGGGLVASSDPATDHLFASSPVPPHLLHSARTSSDHFLPFVPMATLQQHHHHQQQMAAAAAVAVHPQLQPPYHRQVGHFGSPPNGQFEHPFLARQSQPIHRMGAPVPNSVPNYVEDLESANASGGRKVLTLFPTGDD 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25390308 25391213 - CePI673135_04g006500.1 Cec04g0650 200132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g0650 301 Gene3D - 94 156 - -
Cec04g0650 301 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 5 257 IPR044841 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec04g0650 301 NCBIfam myb-like DNA-binding domain, SHAQKYF class 98 150 IPR006447 GO:0003677(InterPro)
Cec04g0650 301 MobiDBLite consensus disorder prediction 1 91 - -
Cec04g0650 301 MobiDBLite consensus disorder prediction 1 18 - -
Cec04g0650 301 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 102 153 IPR017930 -
Cec04g0650 301 FunFam Two-component response regulator 93 156 - -
Cec04g0650 301 Pfam Myb-like DNA-binding domain 100 149 IPR001005 -
Cec04g0650 301 MobiDBLite consensus disorder prediction 46 60 - -
Cec04g0650 301 SUPERFAMILY Homeodomain-like 94 154 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g2102 Cec-Chr2:38606760 Cec04g0650 Cec-Chr4:25390308 1.30E-28 dispersed
Cec04g0650 Cec-Chr4:25390308 Cec10g1667 Cec-Chr10:31143451 4.30E-104 dispersed
Cec04g0650 Cec-Chr4:25390308 Cec03g0127 Cec-Chr3:1227256 4.50E-37 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29298 PF00249 Myb_DNA-binding 2.20E-08 CL0123 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g0650 - - - 0.0