Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g0650 ATGAGGGAAGAACACTCGAATTGGTTCTCTAGGTGGGAAGAGGAGCTTCCATCTCCAGATGAATTGATGCCTCTTTCTCAAACCCTAATAACCCCCGATCTAGCTTTGGCTTTTGATATTCAGAATCCCAGCAATAGCAGTCCGCCGTTGCCTTGTCCATCTCCGCCTCTTTCGAATCCTCTGCCTGGCTCTGGCAACGGAATTGCGCAGCCCAACTCGGCGGATTTCGGCGATTCTGCCGATTTGGGCTCCGGCGCCGCCAGCGATGAGCCGGCTCGGACCCTCAAGCGACCACGCCTTGTTTGGACGCCTCAACTCCACAAGCGATTCGTCGATGCTGTTGCTCATTTAGGGATAAAAAATGCCGTCCCCAAGACCATAATGCAGCTCATGAGTGTCGATGGCTTGACCAGAGAGAACGTAGCTAGCCATTTGCAGAAGTACCGCCTCTATCTCAAGCGGATGCAGGGGTTGTCCTCCGGCGGCGGCGGCGGTGGTGGTGGCTTGGTTGCTTCCTCCGATCCCGCCACCGACCATTTGTTTGCTAGCTCCCCAGTTCCACCCCATTTGCTTCACTCTGCTCGCACCAGTTCAGACCATTTCTTGCCCTTTGTTCCCATGGCCACTCTGCAGCAGCACCACCATCACCAGCAGCAGATGGCCGCTGCTGCTGCTGTCGCCGTCCATCCGCAGCTTCAGCCGCCTTATCATCGGCAGGTCGGGCATTTCGGGTCACCGCCAAATGGCCAGTTTGAGCATCCATTTTTAGCTAGACAGTCCCAGCCTATCCATAGAATGGGAGCACCAGTGCCTAATTCAGTTCCTAATTACGTAGAGGATTTGGAATCAGCCAATGCCAGTGGAGGAAGAAAAGTTCTCACCTTATTTCCTACTGGGGATGATTGA 906 54.42 MREEHSNWFSRWEEELPSPDELMPLSQTLITPDLALAFDIQNPSNSSPPLPCPSPPLSNPLPGSGNGIAQPNSADFGDSADLGSGAASDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGLSSGGGGGGGGLVASSDPATDHLFASSPVPPHLLHSARTSSDHFLPFVPMATLQQHHHHQQQMAAAAAVAVHPQLQPPYHRQVGHFGSPPNGQFEHPFLARQSQPIHRMGAPVPNSVPNYVEDLESANASGGRKVLTLFPTGDD 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25390308 25391213 - CePI673135_04g006500.1 Cec04g0650 200132

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g0650 301 Gene3D - 94 156 - -
Cec04g0650 301 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 5 257 IPR044841 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec04g0650 301 NCBIfam myb-like DNA-binding domain, SHAQKYF class 98 150 IPR006447 GO:0003677(InterPro)
Cec04g0650 301 MobiDBLite consensus disorder prediction 1 91 - -
Cec04g0650 301 MobiDBLite consensus disorder prediction 1 18 - -
Cec04g0650 301 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 102 153 IPR017930 -
Cec04g0650 301 FunFam Two-component response regulator 93 156 - -
Cec04g0650 301 Pfam Myb-like DNA-binding domain 100 149 IPR001005 -
Cec04g0650 301 MobiDBLite consensus disorder prediction 46 60 - -
Cec04g0650 301 SUPERFAMILY Homeodomain-like 94 154 IPR009057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g0650 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g2102 Cec-Chr2:38606760 Cec04g0650 Cec-Chr4:25390308 1.30E-28 dispersed
Cec04g0650 Cec-Chr4:25390308 Cec10g1667 Cec-Chr10:31143451 4.30E-104 dispersed
Cec04g0650 Cec-Chr4:25390308 Cec03g0127 Cec-Chr3:1227256 4.50E-37 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec05g0383 . 12 266 G2-like Transcription Factor Family AT3G24120 63.9 1.8e-78 289.7
Cec02g1969 . 22 192 G2-like Transcription Factor Family AT3G24120 54.6 4.3e-40 162.2
Cec07g0267 . 4 152 G2-like Transcription Factor Family AT3G24120 54.9 9.7e-40 161.0
Cec09g2389 . 16 166 G2-like Transcription Factor Family AT3G24120 58.9 1.3e-39 160.6
Cec04g1815 . 31 149 G2-like Transcription Factor Family AT3G24120 67.2 3.4e-37 152.5
Cec05g1231 . 247 447 G2-like Transcription Factor Family AT5G16560 57.3 1.3e-44 177.6
Cec09g1158 . 199 403 G2-like Transcription Factor Family AT5G16560 51.7 1.2e-40 164.5
Cec05g2157 . 1 167 G2-like Transcription Factor Family AT5G42630 58.9 6.6e-41 164.5
Cec08g1594 . 54 140 G2-like Transcription Factor Family AT5G42630 85.1 2.6e-37 152.5
Cec05g2524 . 19 256 G2-like Transcription Factor Family AT1G25550 56.5 9.3e-53 204.1
Cec08g0536 . 20 258 G2-like Transcription Factor Family AT1G25550 55.2 6.0e-52 201.4
Cec03g0127 . 1 269 G2-like Transcription Factor Family AT3G46640 51.9 2.6e-62 236.1
Cec10g1667 . 5 185 G2-like Transcription Factor Family AT3G46640 50.4 4.9e-37 152.1
Cec04g0650 . 1 301 G2-like Transcription Factor Family AT5G05090 57.1 3.1e-74 275.4
Cec10g1667 . 1 283 G2-like Transcription Factor Family AT5G05090 53.6 8.9e-69 257.3
Cec05g0383 . 12 314 G2-like Transcription Factor Family AT4G13640 57.7 8.6e-65 244.2
Cec05g0383 . 12 266 G2-like Transcription Factor Family AT3G24120 63.9 1.8e-78 289.7
Cec02g1969 . 22 192 G2-like Transcription Factor Family AT3G24120 54.6 4.3e-40 162.2
Cec07g0267 . 4 152 G2-like Transcription Factor Family AT3G24120 54.9 9.7e-40 161.0
Cec09g2389 . 16 166 G2-like Transcription Factor Family AT3G24120 58.9 1.3e-39 160.6
Cec04g1815 . 31 149 G2-like Transcription Factor Family AT3G24120 67.2 3.4e-37 152.5
Cec09g2389 . 1 381 G2-like Transcription Factor Family AT1G79430 55.1 1.7e-86 316.6
Cec02g1969 . 1 181 G2-like Transcription Factor Family AT1G79430 85.8 7.2e-74 274.6
Cec05g0383 . 38 202 G2-like Transcription Factor Family AT1G79430 61.2 3.4e-39 159.5
Cec04g1814 . 102 319 G2-like Transcription Factor Family AT2G01060 65.3 2.1e-53 206.1
Cec04g0650 . 1 301 G2-like Transcription Factor Family AT3G10760 63.3 9.4e-92 334.0
Cec10g1667 . 1 283 G2-like Transcription Factor Family AT3G10760 58.4 2.7e-83 305.8
Cec04g0650 . 1 203 G2-like Transcription Factor Family AT2G40970 60.2 2.4e-60 229.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001839 2 2 1 2 2 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 1 2 4 2 1 67
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29298 PF00249 Myb_DNA-binding 2.20E-08 CL0123 Cec TF