Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g0653 ATGGCTTCAAGACAAGTTGTTCCCCAACAAATCAGAGGCGAGGCAGCGATCGGTGGAGGAAAACAGGCAAAGGGCGCAGCGGCGGCAGATGCTAGGAACCGCCGAGCATTGGGTGATATTGGGAATCTGGTAACTGTTCGAGGAGTTGACGCAAAGGCAAATCGTCCTATTACAAGGAGTTTCTGTGCTCAGTTGCTTGCTAATGCCCAAGCTGCTGCAAAAGCTGAAAATAATAAGAAACAAGTACCTATTAATGTAGATGGGGCTGCTCCCATTCTTGATGCTGGTGTTATGGCTGTTAAGAAAGCAGGAGCTCCCAAGCCAGCACATAAGAAAGTTGCAATTAAACCGACATCGGAGGTTATCGAGATAAGCTCGGACACGGTCGAAAAAGTTAAAGCCAAGGAAGTCAAATGTGCAAACAAGAAAAAGGAAGGAGAAGGGCCCTCAAAGAAGAAAGCACAGACTCTCACTTCAGTCCTAACTGCTAGAAGCAAGGCTGCCTGTGGTGTATCCAAGAAACCTAAAGAGGAGATTTTTGATATTGATGCTGCAGATGTTGGTAATGAGTTGGCAGCAGTTGAATATGTTGAGGACATTTACACTTTCTATAAAGAAGCCGAGAATGAGAGCAGATCTCATGACTATATGGATTCACAACCTGAGATAAACTCGACCATGAGGGCTATTTTGGTGGATTGGCTGGTTGATGTCCACAACAAATTCGAACTTTCGCCCGAAACTTTCTACCTCACGATCAATATAATCGATCGATTCCTTGCGGCAAAAATAGTTCCAAGAAGGGAATTGCAATTGGTGGGCATTGGAGCCATGCTTATAGCCTCCAAATATGAAGAAATTTGGGCGCCTGAGGTAAATGACTTTGTGTGTCTTTCGGATAGAGCTTACACCCATGAACAGATACTAGTGATGGAGAAAAAAATACTTGGCAAGTTGGAATGGACCTTGACTGTTCCTACACCCTACGTTTTCCTCGCTCGATTCATCAAGGCGTCCAAGGACTCCAATCACGAGATGGAAAATCTGGTTTATTTTCTTGCTGAACTTGGTATAATGCATTACAATACGGCAATGATGTATTGCCCGTCCATGATTGCCGCCTCGGCAGTCTATGCGGCTCGATGCACGCTGAAGAAAACCCCTGCTTGGGATGACACCCTCAAACTTCACACTGGTTTCTCAGAACCTCAGATAATTGACTGTGCAAAACTTCTGGTGGGGTTCCATGGGGTAGCAGAGAAGAACAAGCTTCAAGTAATATACCGAAAGTACTCGAGCTCCGAGCGGGGAGCGGTAGCGTTGCTTCAGCCAGCCAAAGCTCTGTTGGCTCTCAATGGTGGTGGTGTCCATTGA 1374 45.92 MASRQVVPQQIRGEAAIGGGKQAKGAAAADARNRRALGDIGNLVTVRGVDAKANRPITRSFCAQLLANAQAAAKAENNKKQVPINVDGAAPILDAGVMAVKKAGAPKPAHKKVAIKPTSEVIEISSDTVEKVKAKEVKCANKKKEGEGPSKKKAQTLTSVLTARSKAACGVSKKPKEEIFDIDAADVGNELAAVEYVEDIYTFYKEAENESRSHDYMDSQPEINSTMRAILVDWLVDVHNKFELSPETFYLTINIIDRFLAAKIVPRRELQLVGIGAMLIASKYEEIWAPEVNDFVCLSDRAYTHEQILVMEKKILGKLEWTLTVPTPYVFLARFIKASKDSNHEMENLVYFLAELGIMHYNTAMMYCPSMIAASAVYAARCTLKKTPAWDDTLKLHTGFSEPQIIDCAKLLVGFHGVAEKNKLQVIYRKYSSSERGAVALLQPAKALLALNGGGVH 457
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25420608 25422843 - CePI673135_04g006530.1 Cec04g0653 200135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g0653 457 PANTHER CYCLINS 175 432 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Cec04g0653 457 FunFam G2/mitotic-specific cyclin-1 314 440 - -
Cec04g0653 457 SUPERFAMILY Cyclin-like 188 323 IPR036915 -
Cec04g0653 457 Gene3D - 199 440 - -
Cec04g0653 457 MobiDBLite consensus disorder prediction 1 24 - -
Cec04g0653 457 PIRSF Cyclin_A_B_D_E 1 454 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Cec04g0653 457 Pfam Cyclin, C-terminal domain 326 444 IPR004367 -
Cec04g0653 457 SMART cyclin_7 233 317 IPR013763 -
Cec04g0653 457 SMART cyclin_7 330 414 IPR013763 -
Cec04g0653 457 CDD CYCLIN_AtCycB-like_rpt1 176 321 - -
Cec04g0653 457 SUPERFAMILY Cyclin-like 327 447 IPR036915 -
Cec04g0653 457 Gene3D - 213 324 - -
Cec04g0653 457 Pfam Cyclin, N-terminal domain 199 323 IPR006671 -
Cec04g0653 457 ProSitePatterns Cyclins signature. 228 259 IPR048258 -
Cec04g0653 457 SMART Cyclin_C_2 326 445 IPR004367 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g2373 Cec-Chr2:41000627 Cec04g0653 Cec-Chr4:25420608 8.00E-111 dispersed
Cec04g0653 Cec-Chr4:25420608 Cec11g1912 Cec-Chr11:33326601 1.70E-67 dispersed
Cec04g0653 Cec-Chr4:25420608 Cec05g1888 Cec-Chr5:30937193 2.90E-43 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g0653 K21777 - csv:101217210 750.355