Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g0725 ATGGCAGAATTAGATCAAGAAGTAGTTGACCCTCCTCCCTTCTTTCTCTGTCCCATCTCTTTGCACATCATGAAAGACCCCGTCACGATCGCCTCCGGCATAACCTACGACCGAGAAAACATCGAGAAATGGTTGTTTTCCGACAAACACAAGACGTGCCCTGTCTCACAAGTTGTCTTGTCGGATTTCAACATCACTCCCAACCATACTTTAAGACGAGTTATTCAAGCTTGGTGCACAGTCAACGCTTGTAGTGGCATCGAGAGGATGCCAACACCCAAACCTCCGGTCGACAGGAAACAAGTCGTTAGGATTCTCGCTGATGCCAAGTTATCTCCTTTCTCTCAGCAGAATTGTCTTCGTCGTCTTCGATCTATCGCTGCGGCGAATGAAACTAATAAACGTTGCATGGAATCTGCTGGAGCTGTGGAGTTCTTGGCTGGGCTTGTGTGTAGTTCTGCAACCAACGTGGAGTCTGGCTTTGAAGATTACGCGTTTGACGACATGTCGGCAAATTTGGGGGATGAGGCTTTGAGCATTCTTCACAAACTCCAGATCTCCGAATCCGCTCTCAAATTTCTGCTCTCCAACAATGGCGGCATCTTCATCTCCACCTTAACCAAAATCTTGCAAAACCGAAGCTATTCCTCCCGAGCGTATTCAATAATGCTTCTCAATTCAATGTTCGAAGTCGCAGATCAGGTTCAAATCCTCAGTCTCACCGCCGATTTCTTCATCGAAATCGTCCAAATCCTTAAAGATCAGATCTCCAAACAAGCCTCGAAATCGGCATTGAAATTGCTAATCGGTGTCTGTTCAAGTTCCAGAAACAGAGTAAAGGCGGTTCAAGCCGGTGCGGTTCCGGTTCTGATCGATCTCCTTCTCGATCTCGATTCGTCGGAGAAGCGTTTGTGCGAGATGATTCTCGTGGTGCTTGATCTGCTGTGTGGCTGCGCCGATGGCAGGGCGGAGCTGTTGAATCACGCGGCGGGGATCGCCGTCGTGTCGAAGAAGATTTTGAGAGTTTCGTCGCTCGGAAGTGAGAAGGCGGTTGGGATCTTATGGTCCGTTGCGAGATTCTCGGCGAGCCAAACCGTGGTTCAGGAAATGCTGCGGCTGGGAGTTGTGACGAAGCTTTGTTTTCTGCTTCAAGTGGTAGACGCGGGAGCGAAAGCGAAAGAGAAAGCTAAAGAGATTCTGAAGCTTCATGGTCGGCCATGGCGGAATTCTTCTTGTTTGCCTTCGAGTCTGCGATCATCTTATCCACAACATTAG 1275 48.86 MAELDQEVVDPPPFFLCPISLHIMKDPVTIASGITYDRENIEKWLFSDKHKTCPVSQVVLSDFNITPNHTLRRVIQAWCTVNACSGIERMPTPKPPVDRKQVVRILADAKLSPFSQQNCLRRLRSIAAANETNKRCMESAGAVEFLAGLVCSSATNVESGFEDYAFDDMSANLGDEALSILHKLQISESALKFLLSNNGGIFISTLTKILQNRSYSSRAYSIMLLNSMFEVADQVQILSLTADFFIEIVQILKDQISKQASKSALKLLIGVCSSSRNRVKAVQAGAVPVLIDLLLDLDSSEKRLCEMILVVLDLLCGCADGRAELLNHAAGIAVVSKKILRVSSLGSEKAVGILWSVARFSASQTVVQEMLRLGVVTKLCFLLQVVDAGAKAKEKAKEILKLHGRPWRNSSCLPSSLRSSYPQH 424
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26416301 26418720 - CePI673135_04g007250.1 Cec04g0725 200207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g0725 424 ProSiteProfiles U-box domain profile. 10 85 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cec04g0725 424 SUPERFAMILY ARM repeat 103 389 IPR016024 -
Cec04g0725 424 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 87 IPR013083 -
Cec04g0725 424 SMART Ubox_2 14 78 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cec04g0725 424 SUPERFAMILY RING/U-box 3 85 - -
Cec04g0725 424 CDD RING-Ubox_PUB 12 63 IPR045210 -
Cec04g0725 424 Gene3D - 99 406 IPR011989 -
Cec04g0725 424 Pfam U-box domain 12 80 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cec04g0725 424 PANTHER WDSAM1 PROTEIN 7 416 IPR045185 GO:0061630(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g2358 Cec-Chr2:40813868 Cec04g0725 Cec-Chr4:26416301 3.50E-98 dispersed
Cec04g0725 Cec-Chr4:26416301 Cec05g0305 Cec-Chr5:2486846 4.00E-55 dispersed
Cec04g0725 Cec-Chr4:26416301 Cec10g1844 Cec-Chr10:33283467 9.90E-115 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g0725 - - - 0.0