Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g0772 ATGGCGGTTTCTCCCCACTCTTTTCCGCCGAGGAAACGGCGGCCGTCCGCCGCCGCTTTCGTCTCTCCCAAACTCTCCGTCCCAATCCTCCTCGAATCCCTTCTCTCTCTCTCCCAAGAAATCTCCGGCATGAAACCACTCCAATTCCTCCTCAACCGTTACTCCAATTCCATGATTCACAAATCAAGATTGCTTGAGATTTTCCTCGACGACCTCCGCCGCAACCGGATCGTTTCGTTCTCCGCCTCCGCCTCCCTCTGTCTCGAAGAAATGTACATCGTTTTACAGAGAATCAAGACGTTGATTGAAGATTGTTCTAACGGAAGCAAGATGTGGTTACTCACACAGAATGAATCCATCGCCAATAATTTCCACGAACTCACTTTGGATTTATCGACTCTGCTCGATATCTTCCCTGTCAAAGACGCTGAATTAACCGAAGACGTTGAAGAATTGTTTTACCTCTTGAGAAATCAGTGCTCTGAATCCGCCGCTTTCCTCGATCCAAGAGATGAAACTCTCCGATTCAGATTATTGAAGATGATCGATCGAATCAAAGACGAAATCGTTCCGGATTATTCCGAATTGTCAGAGATTTTCTCCAGGATTGATATTCGCGATTCGTCGAGTTGTAGAGAGGAAATCGAGAATCTGGAAGATGAAATTCAGAATCAAACCGATGAGAAATCGAGATCTGACGTGATTGCGTTGATCGGATTAGTTCGTTACGCGAAATGCGTTTTATATGGAGCATCGACGGCGGAATATGGTTTCCGGCGGAAAGATTCAATTTCCGATTTGCCTGTACCGGCGGATTTCAGATGTCCGATTAGTTTGGATTTAATGCAAGACCCTGTTGTCGTGGCAACAGGACATACGTACGATCGTGCGGCGATAACTCTGTGGATTGAATCTGGGCATACCACCTGTCCGAAGACAGGTCAGACTCTGGCCCACACGAACCTAATTCCGAACCGAGCATTGAAAAATTTGATTGCGATGTGGTGCCGTCAAGAGAGAATTCCGTTTGATGTAACGGAAAGTAATAAAGAGAGAGTCAACGACGTCACGTTAAATAAAGCGGCGTTAGAAGCAATGAGAATGACGGCAACGTTTCTCGTTAACAAACTCGCCACGTCAGCTAATTCTTCTGTGAACGACGTCGTTTACGAGCTTCGTGTTTTGGCTAAAACAGATTCCGGCAGCCGTGGATATATCGCTCAAGCCGGAGCTCTGCCGTTACTCGTCCGATATCTCAACTCCGACAACCCGATTCTCCAAGTGAACGCCGTCACCACGGTGCTCAACCTCTCGATTTTCGAAGCCAACAAATCGCTGATAATGGAAACCGACGGCGCGCTGATCGGAGTGATCGAGGTACTCCGGTCCGGCGCTACCTGGGAAGCGAAAGGTAACGCCGCTGCCACCATATTCAGCCTCTCCAGTATCCATTCTTACCGGCGGAGATTGGGAAGGAAGACACGTGTCATAAAGGGATTGCTTGATTTGGCTAAAGATGGGCCGATTAATTCGAAGAGGGATGCTCTGGTTACCATTTTGACATTAGCCGGCGATAGGGAGACCGTCGGGAGATTAATCGAAGGTGGGATTATGGAGACGGTAAGTCATCTGATGAACAGCCTGCCGGAGGAGGCGGTGACGATTCTGGAAGTGGTGGTGAGAAAAGGGGGATTTGTGGCGATTGCTTCGGGATTTTATCTGATTAAGAAATTGGGGGCGGTGTTGAGAGAAGGCTCCGATAGGGCCAGAGAAAGCGCCGCCGCGGCGCTGGTGACAATGTGCCGGCAAGGTGGGTCGGAGATGGTGACGGAGTTGGCGTCGATGGCCGGGATTGAGAGAGTCATTTGGGAACAGATGGGGAGTGGGACAATTAGAGGGCGGCGGAAGGCAGCGTCGCTGTTGAGAATACTCCGGCGATGGGCGGCGGGTTTGGATGTAATAGGTGGTGCCGGAGGAGATTCCTTAACGGTTACTTCGTCGAGAATCGGCGGCGACTCAACCACCATTGTTAGTTCGTCAAGAGGAGCAACTGTGCATAGCTAG 2064 49.81 MAVSPHSFPPRKRRPSAAAFVSPKLSVPILLESLLSLSQEISGMKPLQFLLNRYSNSMIHKSRLLEIFLDDLRRNRIVSFSASASLCLEEMYIVLQRIKTLIEDCSNGSKMWLLTQNESIANNFHELTLDLSTLLDIFPVKDAELTEDVEELFYLLRNQCSESAAFLDPRDETLRFRLLKMIDRIKDEIVPDYSELSEIFSRIDIRDSSSCREEIENLEDEIQNQTDEKSRSDVIALIGLVRYAKCVLYGASTAEYGFRRKDSISDLPVPADFRCPISLDLMQDPVVVATGHTYDRAAITLWIESGHTTCPKTGQTLAHTNLIPNRALKNLIAMWCRQERIPFDVTESNKERVNDVTLNKAALEAMRMTATFLVNKLATSANSSVNDVVYELRVLAKTDSGSRGYIAQAGALPLLVRYLNSDNPILQVNAVTTVLNLSIFEANKSLIMETDGALIGVIEVLRSGATWEAKGNAAATIFSLSSIHSYRRRLGRKTRVIKGLLDLAKDGPINSKRDALVTILTLAGDRETVGRLIEGGIMETVSHLMNSLPEEAVTILEVVVRKGGFVAIASGFYLIKKLGAVLREGSDRARESAAAALVTMCRQGGSEMVTELASMAGIERVIWEQMGSGTIRGRRKAASLLRILRRWAAGLDVIGGAGGDSLTVTSSRIGGDSTTIVSSSRGATVHS 687
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27156672 27158735 - CePI673135_04g007720.1 Cec04g0772 200254

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g0772 687 CDD RING-Ubox_PUB 270 322 IPR045210 -
Cec04g0772 687 Gene3D - 54 141 IPR036537 GO:0007166(InterPro)
Cec04g0772 687 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 410 452 IPR000225 GO:0005515(InterPro)
Cec04g0772 687 Pfam Armadillo/beta-catenin-like repeat 403 438 IPR000225 GO:0005515(InterPro)
Cec04g0772 687 SUPERFAMILY ARM repeat 372 644 IPR016024 -
Cec04g0772 687 Gene3D - 370 647 IPR011989 -
Cec04g0772 687 ProSiteProfiles U-box domain profile. 268 342 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cec04g0772 687 FunFam RING-type E3 ubiquitin transferase 268 342 - -
Cec04g0772 687 Coils Coil 208 235 - -
Cec04g0772 687 Pfam U-box domain 269 340 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cec04g0772 687 PANTHER U BOX DOMAIN-CONTAINING 52 648 - -
Cec04g0772 687 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 253 350 IPR013083 -
Cec04g0772 687 SMART Ubox_2 272 335 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cec04g0772 687 SUPERFAMILY RING/U-box 260 341 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g0772 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec03g0670 Cec-Chr3:7230248 Cec04g0772 Cec-Chr4:27156672 2.80E-101 dispersed
Cec04g0772 Cec-Chr4:27156672 Cec11g0628 Cec-Chr11:6917208 3.70E-95 dispersed
Cec04g0772 Cec-Chr4:27156672 Cec01g1479 Cec-Chr1:29459134 5.40E-78 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g376 Blo01g01030 . Bda01g00060 . . . . . . . Cma03g00299 Cma07g01227 Car03g00261 Car07g01182 Sed14g0585 Cpe10g00996 . Bhi03g02213 Tan03g0722 Cmetu08g1604 . Hepe04g0691 . . Cla04g00653 Cam04g0651 Cec04g0772 Cco04g0823 Clacu04g0698 Cmu04g0693 Cre04g0745 . Cone10ag0439 . . Lsi01g01607 Csa04g01681 Chy08g00584 . . . . . . . Bma01g01714 . . Cmo03g00311 Cmo07g01269 . . . . . Cpe19g00149 . . . . . . . . . . . . . . . . . Cme08g02117
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec10g1556 . 1 1041 U-box Gene Family AT5G15400 75.9 0.0e+00 1573.5
Cec02g1312 . 213 857 U-box Gene Family AT2G23140 66.5 5.5e-125 445.3
Cec08g1778 . 1 780 U-box Gene Family AT1G24330 59.3 3.5e-243 838.2
Cec11g1438 . 1 755 U-box Gene Family AT1G24330 58.3 7.6e-230 793.9
Cec08g1778 . 1 779 U-box Gene Family AT1G67530 59.3 1.5e-241 832.8
Cec11g1438 . 1 756 U-box Gene Family AT1G67530 57.3 5.2e-226 781.2
Cec04g1948 . 1 362 U-box Gene Family AT4G21350 62.3 1.4e-120 429.9
Cec07g0255 . 135 460 U-box Gene Family AT3G07360 55.3 3.8e-82 302.0
Cec07g0695 . 265 452 U-box Gene Family AT1G71020 70.9 1.1e-72 271.2
Cec01g0614 . 253 452 U-box Gene Family AT1G71020 55.9 5.0e-54 209.1
Cec03g0157 . 258 427 U-box Gene Family AT1G71020 57.8 9.1e-48 188.3
Cec05g2340 . 249 414 U-box Gene Family AT1G71020 57.4 5.9e-47 185.7
Cec02g2133 . 255 425 U-box Gene Family AT1G71020 57.6 1.0e-46 184.9
Cec07g0695 . 16 656 U-box Gene Family AT1G23030 56.6 1.1e-109 394.4
Cec01g0614 . 18 642 U-box Gene Family AT1G23030 51.9 6.3e-86 315.5
Cec03g0157 . 93 644 U-box Gene Family AT2G28830 59.2 5.4e-103 372.1
Cec02g2133 . 93 635 U-box Gene Family AT2G28830 50.8 1.2e-99 360.9
Cec03g0157 . 1 634 U-box Gene Family AT3G46510 70.7 5.8e-170 594.7
Cec02g2133 . 1 638 U-box Gene Family AT3G46510 66.7 1.3e-158 557.0
Cec05g2340 . 16 623 U-box Gene Family AT3G46510 58.6 5.0e-121 432.2
Cec05g2340 . 12 625 U-box Gene Family AT3G54850 68.3 8.6e-163 570.9
Cec02g2133 . 13 628 U-box Gene Family AT3G54850 57.3 2.3e-115 413.3
Cec03g0157 . 8 627 U-box Gene Family AT3G54850 55.7 6.9e-104 375.2
Cec02g1026 . 92 644 U-box Gene Family AT5G42340 64.7 9.4e-128 454.5
Cec04g0772 . 9 669 U-box Gene Family AT5G01830 57.1 8.8e-198 687.2
Cec03g0670 . 1 714 U-box Gene Family AT1G29340 67.9 3.2e-246 848.2
Cec05g1298 . 27 442 U-box Gene Family AT5G37490 51.2 9.9e-110 394.0
Cec04g0725 . 4 422 U-box Gene Family AT3G52450 52.6 4.0e-119 425.2
Cec10g1844 . 1 403 U-box Gene Family AT3G52450 50.9 3.0e-114 409.1
Cec10g1844 . 1 403 U-box Gene Family AT2G35930 55.8 3.4e-120 428.7
Cec04g0725 . 7 422 U-box Gene Family AT2G35930 51.2 1.0e-116 417.2
Cec02g2358 . 1 385 U-box Gene Family AT2G35930 50.3 3.7e-106 382.1
Cec05g1187 . 9 424 U-box Gene Family AT3G19380 64.2 5.7e-147 517.7
Cec05g1187 . 1 424 U-box Gene Family AT1G49780 64.3 1.7e-151 532.7
Cec04g1242 . 1 407 U-box Gene Family AT5G64660 53.9 2.4e-121 432.6
Cec04g1242 . 1 407 U-box Gene Family AT5G09800 50.8 1.4e-105 380.2
Cec05g2899 . 1 454 U-box Gene Family AT3G49810 63.2 2.1e-155 545.8
Cec08g1724 . 1 454 U-box Gene Family AT3G49810 62.8 2.0e-153 539.3
Cec08g1724 . 1 454 U-box Gene Family AT5G65920 64.1 1.1e-153 540.0
Cec05g2899 . 1 454 U-box Gene Family AT5G65920 61.5 5.5e-148 521.2
Cec05g0177 . 1 872 U-box Gene Family AT2G45910 52.5 3.6e-233 805.1
Cec11g0176 . 47 769 U-box Gene Family AT2G19410 50.9 1.1e-210 730.3
Cec09g1985 . 1 551 U-box Gene Family AT5G40140 54.3 8.7e-95 344.7
Cec01g1494 . 29 498 U-box Gene Family AT5G40140 51.9 1.5e-54 211.1
Cec08g0964 . 26 834 U-box Gene Family AT1G76390 61.3 7.9e-270 926.8
Cec08g0964 . 35 834 U-box Gene Family AT1G20780 61.8 7.0e-279 956.8
Cec08g1778 . 1 782 U-box Gene Family AT1G27910 62.3 1.0e-266 916.4
Cec11g1438 . 1 767 U-box Gene Family AT1G27910 62.4 2.0e-262 902.1
Cec04g1448 . 438 1029 U-box Gene Family AT5G67530 73.8 2.4e-260 894.8
Cec05g0245 . 656 813 U-box Gene Family AT5G67530 52.5 3.1e-45 180.3
Cec10g1892 . 12 162 U-box Gene Family AT5G67530 50.3 9.2e-42 168.7
Cec01g0462 . 176 634 U-box Gene Family AT5G51270 59.0 3.2e-146 516.2
Cec05g0458 . 1 517 U-box Gene Family AT1G04510 74.0 3.4e-221 764.6
Cec05g0458 . 1 486 U-box Gene Family AT2G33340 73.4 1.4e-208 722.6
Cec07g0254 . 10 278 U-box Gene Family AT3G07370 66.9 4.9e-102 367.9
Cec10g1556 . 1 1041 U-box Gene Family AT5G15400 75.9 0.0e+00 1573.5
Cec02g1312 . 213 857 U-box Gene Family AT2G23140 66.5 5.5e-125 445.3
Cec08g1778 . 1 780 U-box Gene Family AT1G24330 59.3 3.5e-243 838.2
Cec11g1438 . 1 755 U-box Gene Family AT1G24330 58.3 7.6e-230 793.9
Cec08g1778 . 1 779 U-box Gene Family AT1G67530 59.3 1.5e-241 832.8
Cec11g1438 . 1 756 U-box Gene Family AT1G67530 57.3 5.2e-226 781.2
Cec04g1948 . 1 362 U-box Gene Family AT4G21350 62.3 1.4e-120 429.9
Cec07g0255 . 135 460 U-box Gene Family AT3G07360 55.3 3.8e-82 302.0
Cec07g0695 . 265 452 U-box Gene Family AT1G71020 70.9 1.1e-72 271.2
Cec01g0614 . 253 452 U-box Gene Family AT1G71020 55.9 5.0e-54 209.1
Cec03g0157 . 258 427 U-box Gene Family AT1G71020 57.8 9.1e-48 188.3
Cec05g2340 . 249 414 U-box Gene Family AT1G71020 57.4 5.9e-47 185.7
Cec02g2133 . 255 425 U-box Gene Family AT1G71020 57.6 1.0e-46 184.9
Cec07g0695 . 16 656 U-box Gene Family AT1G23030 56.6 1.1e-109 394.4
Cec01g0614 . 18 642 U-box Gene Family AT1G23030 51.9 6.3e-86 315.5
Cec03g0157 . 93 644 U-box Gene Family AT2G28830 59.2 5.4e-103 372.1
Cec02g2133 . 93 635 U-box Gene Family AT2G28830 50.8 1.2e-99 360.9
Cec03g0157 . 1 634 U-box Gene Family AT3G46510 70.7 5.8e-170 594.7
Cec02g2133 . 1 638 U-box Gene Family AT3G46510 66.7 1.3e-158 557.0
Cec05g2340 . 16 623 U-box Gene Family AT3G46510 58.6 5.0e-121 432.2
Cec05g2340 . 12 625 U-box Gene Family AT3G54850 68.3 8.6e-163 570.9
Cec02g2133 . 13 628 U-box Gene Family AT3G54850 57.3 2.3e-115 413.3
Cec03g0157 . 8 627 U-box Gene Family AT3G54850 55.7 6.9e-104 375.2
Cec02g1026 . 92 644 U-box Gene Family AT5G42340 64.7 9.4e-128 454.5
Cec04g0772 . 9 669 U-box Gene Family AT5G01830 57.1 8.8e-198 687.2
Cec03g0670 . 1 714 U-box Gene Family AT1G29340 67.9 3.2e-246 848.2
Cec05g1298 . 27 442 U-box Gene Family AT5G37490 51.2 9.9e-110 394.0
Cec04g0725 . 4 422 U-box Gene Family AT3G52450 52.6 4.0e-119 425.2
Cec10g1844 . 1 403 U-box Gene Family AT3G52450 50.9 3.0e-114 409.1
Cec10g1844 . 1 403 U-box Gene Family AT2G35930 55.8 3.4e-120 428.7
Cec04g0725 . 7 422 U-box Gene Family AT2G35930 51.2 1.0e-116 417.2
Cec02g2358 . 1 385 U-box Gene Family AT2G35930 50.3 3.7e-106 382.1
Cec05g1187 . 9 424 U-box Gene Family AT3G19380 64.2 5.7e-147 517.7
Cec05g1187 . 1 424 U-box Gene Family AT1G49780 64.3 1.7e-151 532.7
Cec04g1242 . 1 407 U-box Gene Family AT5G64660 53.9 2.4e-121 432.6
Cec04g1242 . 1 407 U-box Gene Family AT5G09800 50.8 1.4e-105 380.2
Cec05g2899 . 1 454 U-box Gene Family AT3G49810 63.2 2.1e-155 545.8
Cec08g1724 . 1 454 U-box Gene Family AT3G49810 62.8 2.0e-153 539.3
Cec08g1724 . 1 454 U-box Gene Family AT5G65920 64.1 1.1e-153 540.0
Cec05g2899 . 1 454 U-box Gene Family AT5G65920 61.5 5.5e-148 521.2
Cec05g0177 . 1 872 U-box Gene Family AT2G45910 52.5 3.6e-233 805.1
Cec11g0176 . 47 769 U-box Gene Family AT2G19410 50.9 1.1e-210 730.3
Cec09g1985 . 1 551 U-box Gene Family AT5G40140 54.3 8.7e-95 344.7
Cec01g1494 . 29 498 U-box Gene Family AT5G40140 51.9 1.5e-54 211.1
Cec08g0964 . 26 834 U-box Gene Family AT1G76390 61.3 7.9e-270 926.8
Cec08g0964 . 35 834 U-box Gene Family AT1G20780 61.8 7.0e-279 956.8
Cec08g1778 . 1 782 U-box Gene Family AT1G27910 62.3 1.0e-266 916.4
Cec11g1438 . 1 767 U-box Gene Family AT1G27910 62.4 2.0e-262 902.1
Cec04g1448 . 438 1029 U-box Gene Family AT5G67530 73.8 2.4e-260 894.8
Cec05g0245 . 656 813 U-box Gene Family AT5G67530 52.5 3.1e-45 180.3
Cec10g1892 . 12 162 U-box Gene Family AT5G67530 50.3 9.2e-42 168.7
Cec01g0462 . 176 634 U-box Gene Family AT5G51270 59.0 3.2e-146 516.2
Cec05g0458 . 1 517 U-box Gene Family AT1G04510 74.0 3.4e-221 764.6
Cec05g0458 . 1 486 U-box Gene Family AT2G33340 73.4 1.4e-208 722.6
Cec07g0254 . 10 278 U-box Gene Family AT3G07370 66.9 4.9e-102 367.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009140 1 1 1 1 0 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 0 2 1 1 33