Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g0801 ATGACGTCTGAGAATTCTAGTGGAGAAAAGACATCAAGAAAGAGGCGAAATGGGTATGTTTCTGTAGTGGACACTTTGAACAAGTGGAAGAAGTTGAACAATCAATTGGAGGATTTGGCAAAAGATGGAGTAGAAGAAATTCGTAGAGTTCCAGCCAAGGGCTCTAAGAAGGGTTGCATGAGAGGGAAAGGAGGTCCTCAGAATTCAGATTGTAATTTCAGAGGTGTTAGACAGAGGACTTGGGGAAAGTGGGTGGCTGAAATTAGAGAGCCAATTGCTAGTAATAATACCCGTGTGAAGAAGAAAGGCAGTCGTTTATGGCTTGGCACTTTTGCCACTGCTCATCAGGCTGCTCTTGCTTATGATGAAGCTGCTAAAGCCATGTATGGCCCTTTTGCCCGTCTCAATTTTCCTGATTCTTCATCTTCTCCTCTGAAACCAGTAATAGTAGAGCATTCTGATTCGATATCCCCAGTTGCTTCTTCCTCCTCGTCTTCTTCCATTTTCAATGGACCATCTGCAGAGAAAATGCACTGCTGTTATTCAATGGATAAGCAAGAGAATTGTGGGTATGAATCAATGGAGGAACTGAAGGTGAAAGTGGAAGAAACAGCAAGAAATAGAGTCAATTACACAGATGCTACATTTTATGATTCTAACATTGGTAACAGATTAACAGAAGGGAATATCAAGGAAGGATTAGCTGATGTTGTAAGAAGTAATGATATTAATAGAGATAGCCATGATCAGAATGACCCTTCTGAGCTTTGTTTCAAATTTGAAGCTATGGATACAAATGGCTGCAATGACTTAAACGAATGCAATCAATATGTGCTACAGAAGTTTCAAAGTGATCCATATGCAAGAACTTACTGGATTCCGGCTGAGTGGAAGATCGGCGATCTTGGGTCCGCACCGGTGATGGAAGGAAAGCCAATGGAGATAGAGAGCTATGGAGATTGTATGGCCTTCAACCGTGATCTGAGTTTGTTGCTGGATCGGCAAAAACACATGGGAGTTGGAGACCAAAGAGTTGATGATTGTAACTTCGAGTTTTTGAGACCTGATTATGATTTTGGGTTGGAGGAGGAACGCAAGTGGCTTGATTTATGGTTCCGTGGATGA 1125 41.96 MTSENSSGEKTSRKRRNGYVSVVDTLNKWKKLNNQLEDLAKDGVEEIRRVPAKGSKKGCMRGKGGPQNSDCNFRGVRQRTWGKWVAEIREPIASNNTRVKKKGSRLWLGTFATAHQAALAYDEAAKAMYGPFARLNFPDSSSSPLKPVIVEHSDSISPVASSSSSSSIFNGPSAEKMHCCYSMDKQENCGYESMEELKVKVEETARNRVNYTDATFYDSNIGNRLTEGNIKEGLADVVRSNDINRDSHDQNDPSELCFKFEAMDTNGCNDLNECNQYVLQKFQSDPYARTYWIPAEWKIGDLGSAPVMEGKPMEIESYGDCMAFNRDLSLLLDRQKHMGVGDQRVDDCNFEFLRPDYDFGLEEERKWLDLWFRG 374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27680416 27681714 + CePI673135_04g008010.1 Cec04g0801 200283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g0801 374 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 6 284 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006950(PANTHER)|GO:0045893(PANTHER)
Cec04g0801 374 SUPERFAMILY DNA-binding domain 72 140 IPR016177 GO:0003677(InterPro)
Cec04g0801 374 CDD AP2 71 140 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec04g0801 374 Gene3D AP2/ERF domain 72 139 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec04g0801 374 ProSiteProfiles AP2/ERF domain profile. 72 138 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec04g0801 374 SMART rav1_2 72 144 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec04g0801 374 FunFam Ethylene-responsive transcription factor 2 71 139 - -
Cec04g0801 374 Pfam AP2 domain 72 130 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec04g0801 374 Coils Coil 194 214 - -
Cec04g0801 374 PRINTS Ethylene responsive element binding protein signature 104 120 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec04g0801 374 PRINTS Ethylene responsive element binding protein signature 73 84 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g0801 Cec-Chr4:27680416 Cec05g2048 Cec-Chr5:32402836 1.60E-28 dispersed
Cec02g1167 Cec-Chr2:27243656 Cec04g0801 Cec-Chr4:27680416 2.90E-20 transposed
Cec11g0623 Cec-Chr11:6865524 Cec04g0801 Cec-Chr4:27680416 3.40E-08 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29304 PF00847 AP2 7.50E-15 CL0081 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g0801 - - - 0.0