Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cec04g0801 | ATGACGTCTGAGAATTCTAGTGGAGAAAAGACATCAAGAAAGAGGCGAAATGGGTATGTTTCTGTAGTGGACACTTTGAACAAGTGGAAGAAGTTGAACAATCAATTGGAGGATTTGGCAAAAGATGGAGTAGAAGAAATTCGTAGAGTTCCAGCCAAGGGCTCTAAGAAGGGTTGCATGAGAGGGAAAGGAGGTCCTCAGAATTCAGATTGTAATTTCAGAGGTGTTAGACAGAGGACTTGGGGAAAGTGGGTGGCTGAAATTAGAGAGCCAATTGCTAGTAATAATACCCGTGTGAAGAAGAAAGGCAGTCGTTTATGGCTTGGCACTTTTGCCACTGCTCATCAGGCTGCTCTTGCTTATGATGAAGCTGCTAAAGCCATGTATGGCCCTTTTGCCCGTCTCAATTTTCCTGATTCTTCATCTTCTCCTCTGAAACCAGTAATAGTAGAGCATTCTGATTCGATATCCCCAGTTGCTTCTTCCTCCTCGTCTTCTTCCATTTTCAATGGACCATCTGCAGAGAAAATGCACTGCTGTTATTCAATGGATAAGCAAGAGAATTGTGGGTATGAATCAATGGAGGAACTGAAGGTGAAAGTGGAAGAAACAGCAAGAAATAGAGTCAATTACACAGATGCTACATTTTATGATTCTAACATTGGTAACAGATTAACAGAAGGGAATATCAAGGAAGGATTAGCTGATGTTGTAAGAAGTAATGATATTAATAGAGATAGCCATGATCAGAATGACCCTTCTGAGCTTTGTTTCAAATTTGAAGCTATGGATACAAATGGCTGCAATGACTTAAACGAATGCAATCAATATGTGCTACAGAAGTTTCAAAGTGATCCATATGCAAGAACTTACTGGATTCCGGCTGAGTGGAAGATCGGCGATCTTGGGTCCGCACCGGTGATGGAAGGAAAGCCAATGGAGATAGAGAGCTATGGAGATTGTATGGCCTTCAACCGTGATCTGAGTTTGTTGCTGGATCGGCAAAAACACATGGGAGTTGGAGACCAAAGAGTTGATGATTGTAACTTCGAGTTTTTGAGACCTGATTATGATTTTGGGTTGGAGGAGGAACGCAAGTGGCTTGATTTATGGTTCCGTGGATGA | 1125 | 41.96 | MTSENSSGEKTSRKRRNGYVSVVDTLNKWKKLNNQLEDLAKDGVEEIRRVPAKGSKKGCMRGKGGPQNSDCNFRGVRQRTWGKWVAEIREPIASNNTRVKKKGSRLWLGTFATAHQAALAYDEAAKAMYGPFARLNFPDSSSSPLKPVIVEHSDSISPVASSSSSSSIFNGPSAEKMHCCYSMDKQENCGYESMEELKVKVEETARNRVNYTDATFYDSNIGNRLTEGNIKEGLADVVRSNDINRDSHDQNDPSELCFKFEAMDTNGCNDLNECNQYVLQKFQSDPYARTYWIPAEWKIGDLGSAPVMEGKPMEIESYGDCMAFNRDLSLLLDRQKHMGVGDQRVDDCNFEFLRPDYDFGLEEERKWLDLWFRG | 374 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 27680416 | 27681714 | + | CePI673135_04g008010.1 | Cec04g0801 | 200283 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cec04g0801 | 374 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C | 6 | 284 | - | GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006950(PANTHER)|GO:0045893(PANTHER) | |
Cec04g0801 | 374 | SUPERFAMILY | DNA-binding domain | 72 | 140 | IPR016177 | GO:0003677(InterPro) | |
Cec04g0801 | 374 | CDD | AP2 | 71 | 140 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec04g0801 | 374 | Gene3D | AP2/ERF domain | 72 | 139 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec04g0801 | 374 | ProSiteProfiles | AP2/ERF domain profile. | 72 | 138 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec04g0801 | 374 | SMART | rav1_2 | 72 | 144 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec04g0801 | 374 | FunFam | Ethylene-responsive transcription factor 2 | 71 | 139 | - | - | |
Cec04g0801 | 374 | Pfam | AP2 domain | 72 | 130 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec04g0801 | 374 | Coils | Coil | 194 | 214 | - | - | |
Cec04g0801 | 374 | PRINTS | Ethylene responsive element binding protein signature | 104 | 120 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec04g0801 | 374 | PRINTS | Ethylene responsive element binding protein signature | 73 | 84 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cec04g0801 | Cec-Chr4:27680416 | Cec05g2048 | Cec-Chr5:32402836 | 1.60E-28 | dispersed | |
Cec02g1167 | Cec-Chr2:27243656 | Cec04g0801 | Cec-Chr4:27680416 | 2.90E-20 | transposed | |
Cec11g0623 | Cec-Chr11:6865524 | Cec04g0801 | Cec-Chr4:27680416 | 3.40E-08 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
29304 | PF00847 | AP2 | 7.50E-15 | CL0081 | Cec | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cec04g0801 | - | - | - | 0.0 |