Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cec04g0836 | ATGGCTTCCCAAACAGAGCCTTGGCTAATGGAAAACGGAAGCCTCAAGCGTTTAACCAAAGAGCATCGACATGGCCATGGTCGAACAGCTCACAACATGTCGTCCTCTTCCTTACGCAAAAAGTCCGATCTAACCCTCGTCTCCAAAGTCCAATTCGGCTGTCTCCGCAAGTTTCTTATCAATCTTCAGGAGGTCATTTTGGGAACTAAACTTTCCATTCTCTTCCCTGCGATTCCGCTTGCTATTGTCGCTCAGAGTTTTGGCTTTGGAAGACCTTGGATTTTTGCATTAAGCTTGCTTGGCCTCACGCCATTGGCTGAACGTGTCAGCTTTCTGACCGAGCAAATCGCTTATTTCACGGGCCCAACAGTTGGGGGGCTTTTGAATGCAACATGTGGAAATGCAACGGAGCTGATAATTGCAATTCTTGCACTGACACAAAGAAAGATAGACGTGGTGAAGTATTCTCTTTTGGGTTCTGTTCTTTCAAACCTTCTTCTTGTTCTTGGAACCTCTCTCTTTTGTGGTGGCATTGCAAATCTTAGAAGGGAGCAGAATTATGACAGAAGGCAAGCTGATGTCAACTCCCTGATGCTGATGCTTTCGTTACTGTGTCACCTATTGCCGTTATTGTTTGGCTACGCCGCCTCCTCCGCCTCCACGGCCGCCGCCTCCACCCTCCACCTGTCCAGAGCCAGCAGCATTGTAATGCTCTCCGCTTACATCGCTTACTTGGTCTTCCAACTTTGGACTCATCGACAACTATTTGAAGCTGAGGAAGCTGAAGACGACGACGCTCCTGAAGAAGAGGCAGTGATTGGATTCTGGAGCGCATTTGCATGGCTTGCAGGAATGACACTCCTTATTGCTTTGCTGTCCGAATACGTTGTCAACACAATTGAGGAAGCATCTACTACTTGGGGTTTGTCAGTGAGTTTCCTTAGCATAATCTTGCTCCCTATAGTCGGAAATGCGGCCGAACACGCCGGGGCTATCATATTTGCCTTCAAGAATAAGTTGGACATATCTTTAGGGGTTGCTTTGGGATCTGCAACACAAATTGCACTGTTTGTGATTCCACTTTGTGTGATAGTTGCTTGGACAATGGGAGTGGACATGGACCTGAATTTCAACCTGATGGAAACAGGGTCACTTGGATTGGCCATTATTGCCACAGCCTTCACTTTACAAGATGGAACCTCTCACTATATTAAAGGCCTTGTTCTTCTTCTTTGCTACATTATCATTGCTGCTTGCTTCTTTGTTTCCAAGACACAAGAAGATAACGACAATACTCCCAACTTGAGACTCCAATCTTCAAACCAAGCAATCTTCAGAGCTTGA | 1344 | 46.28 | MASQTEPWLMENGSLKRLTKEHRHGHGRTAHNMSSSSLRKKSDLTLVSKVQFGCLRKFLINLQEVILGTKLSILFPAIPLAIVAQSFGFGRPWIFALSLLGLTPLAERVSFLTEQIAYFTGPTVGGLLNATCGNATELIIAILALTQRKIDVVKYSLLGSVLSNLLLVLGTSLFCGGIANLRREQNYDRRQADVNSLMLMLSLLCHLLPLLFGYAASSASTAAASTLHLSRASSIVMLSAYIAYLVFQLWTHRQLFEAEEAEDDDAPEEEAVIGFWSAFAWLAGMTLLIALLSEYVVNTIEEASTTWGLSVSFLSIILLPIVGNAAEHAGAIIFAFKNKLDISLGVALGSATQIALFVIPLCVIVAWTMGVDMDLNFNLMETGSLGLAIIATAFTLQDGTSHYIKGLVLLLCYIIIAACFFVSKTQEDNDNTPNLRLQSSNQAIFRA | 447 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 28101446 | 28107034 | + | CePI673135_04g008360.1 | Cec04g0836 | 200318 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cec04g0836 | 447 | FunFam | Vacuolar cation/proton exchanger | 122 | 266 | - | - | |
Cec04g0836 | 447 | NCBIfam | calcium/proton exchanger | 76 | 421 | IPR004798 | GO:0006816(InterPro)|GO:0015369(InterPro) | |
Cec04g0836 | 447 | FunFam | Vacuolar cation/proton exchanger | 267 | 422 | - | - | |
Cec04g0836 | 447 | PANTHER | VACUOLAR CALCIUM ION TRANSPORTER | 23 | 425 | IPR004713 | GO:0006812(InterPro)|GO:0006874(PANTHER)|GO:0008324(InterPro)|GO:0009705(PANTHER)|GO:0015369(PANTHER)|GO:0016020(InterPro)|GO:0070588(PANTHER) | |
Cec04g0836 | 447 | Gene3D | - | 122 | 422 | IPR044880 | - | |
Cec04g0836 | 447 | Pfam | Sodium/calcium exchanger protein | 93 | 250 | IPR004837 | GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cec04g0836 | 447 | Pfam | Sodium/calcium exchanger protein | 278 | 421 | IPR004837 | GO:0016020(InterPro)|GO:0055085(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cec02g1110 | Cec-Chr2:24132864 | Cec04g0836 | Cec-Chr4:28101446 | 5.10E-93 | transposed | |
Cec07g1539 | Cec-Chr7:30966589 | Cec04g0836 | Cec-Chr4:28101446 | 8.60E-92 | transposed | |
Cec10g0414 | Cec-Chr10:4972194 | Cec04g0836 | Cec-Chr4:28101446 | 5.10E-94 | transposed | |
Cec10g2206 | Cec-Chr10:36470850 | Cec04g0836 | Cec-Chr4:28101446 | 4.00E-163 | wgd | |
Cec03g0075 | Cec-Chr3:776777 | Cec04g0836 | Cec-Chr4:28101446 | 2.20E-124 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cec04g0836 | K07300 | - | csv:101213857 | 788.104 |