Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g0849 ATGGCCACCGCCGCCGCAACCTCTTCCTTCATCGGAACACGCCTCGCCGAATTACGGCCGAGTTCCGGTCGAGTCCAAGCCCGATTCGGATTCGGGAAGAAGAAGACTCCGGCGAAGAAATCGCCGTCGTCGAAGACGATATCCAACCGGCCGTTGTGGTTTCCGGGAGCAAAGGCGCCGGAATGGCTGGACGGAAGCTTGGTCGGGGACTACGGATTCGATCCGTTCGGGTTGGGGAAACCGGCAGAGTATTTGCAGTATGATTTGGACTCGTTGGATCAGAACTTGGCGAAGAATGTGGCGGGAGATATTATCGGGACGAGATTTGAGAGCGCGGAAGTGAAATCGACCCCGTTTCAGCCGTACACGGAGGTTTTTGGATTGCAGAGATTCCGCGAGTGCGAGCTAATCCATGGAAGGTGGGCAATGCTTGCCACACTCGGTGCTCTCTCTGTGGAATGGCTCACCGGTGTCACGTGGCAAGACGCCGGAAAAGTAGAACTAGTGGAAGGTTCATCCTACCTAGGGCAGCCACTTCCCTTCTCCCTCACCACGCTGATTTGGATCGAAGTTCTAGTGATCGGTTACATCGAGTTTCAAAGGAATGCGGAGTTAGACCCAGAGAAGAGGTTGTATCCAGGAGGCAAGTATTTCGACCCCTTGGGCTTAGCCGAGGACCCCGAAAAGAAAGCCGTCCTACAGTTGGCCGAGATCAAGCACGCTCGCCTAGCCATGGTTGCCTTCCTTGGGTTCGCAGTTCAGGCTGCTGTTACTGGCAAAGGCCCACTCAACAACTGGGCTACCCATCTCAGTGACCCTCTCCACACCACTATTATTGACAACTTCTCTTCTTCTTAA 858 54.55 MATAAATSSFIGTRLAELRPSSGRVQARFGFGKKKTPAKKSPSSKTISNRPLWFPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFESAEVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKYFDPLGLAEDPEKKAVLQLAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSSS 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 28229799 28232023 - CePI673135_04g008490.1 Cec04g0849 200331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g0849 285 Pfam Chlorophyll A-B binding protein 59 255 IPR022796 -
Cec04g0849 285 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 5 279 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0009941(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro)
Cec04g0849 285 Gene3D Chlorophyll a/b binding protein domain 53 285 - -
Cec04g0849 285 FunFam Chlorophyll a-b binding protein, chloroplastic 108 284 - -
Cec04g0849 285 SUPERFAMILY Chlorophyll a-b binding protein 44 283 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g0849 Cec-Chr4:28229799 Cec10g2202 Cec-Chr10:36452102 3.40E-135 dispersed
Cec04g0849 Cec-Chr4:28229799 Cec04g2142 Cec-Chr4:39269986 2.00E-26 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g0849 K08915 - csv:101208740 544.658