Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cec04g0877 | ATGAACAGGAGCCTTATTAATTCCCATCTCGATGTTGGATTCTTGTCCGCGTGGAAAGCTTTAGAGACGGCCGGAGCTGATTTGGAGAAAGAGTGGCAGCGGGCGGCGGCGGTGGCAACGGCGGAGAGGGGAAGTGGAGTTGGTGAAGTGAAGGTGAAGTTGGAGAGAGAATGTAGGATTTGCCATTTGGGTTTAGAGAGCAATAGCAGTGAGTTTGGAGTTGGAATTGAATTGGGTTGTTGTTGTAAGAATGATTTGGGTGCTGCCCACAAGCATTGTGCTGAGGCTTGGTTCAAAATCAGAGGAAACAAGACATGTGAGATATGTCATTCTATTGTAAGAAATGTAATGGTAGCACATGAATTTGAACAAACGGAGCAAGTCCATGGGTCGAACAATGGGACGGTATCAACGGCCACGGTTGCAGCGTCGGTGGCTGCCGCTCCTAGTGGTGGCCGGAGCTTTTGGCATGTTCACAGAGTCCTTAATTTTCTTCTTGCTTGTATGGTATTTGCTTTTGTCATATCTTGGCTCTTTCATTTCAATGTGCCATCATAA | 558 | 46.95 | MNRSLINSHLDVGFLSAWKALETAGADLEKEWQRAAAVATAERGSGVGEVKVKLERECRICHLGLESNSSEFGVGIELGCCCKNDLGAAHKHCAEAWFKIRGNKTCEICHSIVRNVMVAHEFEQTEQVHGSNNGTVSTATVAASVAAAPSGGRSFWHVHRVLNFLLACMVFAFVISWLFHFNVPS | 185 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 28513308 | 28516947 | + | CePI673135_04g008770.1 | Cec04g0877 | 200359 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cec04g0877 | 185 | SUPERFAMILY | RING/U-box | 55 | 113 | - | - | |
Cec04g0877 | 185 | PANTHER | ZINC FINGER, RING-CH-TYPE | 36 | 184 | - | - | |
Cec04g0877 | 185 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 44 | 119 | IPR013083 | - | |
Cec04g0877 | 185 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 50 | 116 | IPR011016 | GO:0008270(InterPro) | |
Cec04g0877 | 185 | SMART | ringv_2 | 57 | 110 | IPR011016 | GO:0008270(InterPro) | |
Cec04g0877 | 185 | Pfam | RING-variant domain | 58 | 109 | IPR011016 | GO:0008270(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cec04g0877 | Cec-Chr4:28513308 | Cec04g2090 | Cec-Chr4:38871210 | 3.50E-16 | dispersed | |
Cec10g2171 | Cec-Chr10:36177429 | Cec04g0877 | Cec-Chr4:28513308 | 1.90E-41 | wgd | |
Cec11g0670 | Cec-Chr11:7427420 | Cec04g0877 | Cec-Chr4:28513308 | 8.00E-30 | wgd | |
Cec03g0099 | Cec-Chr3:1048323 | Cec04g0877 | Cec-Chr4:28513308 | 2.60E-28 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cec04g0877 | - | - | - | 0.0 |