Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g0877 ATGAACAGGAGCCTTATTAATTCCCATCTCGATGTTGGATTCTTGTCCGCGTGGAAAGCTTTAGAGACGGCCGGAGCTGATTTGGAGAAAGAGTGGCAGCGGGCGGCGGCGGTGGCAACGGCGGAGAGGGGAAGTGGAGTTGGTGAAGTGAAGGTGAAGTTGGAGAGAGAATGTAGGATTTGCCATTTGGGTTTAGAGAGCAATAGCAGTGAGTTTGGAGTTGGAATTGAATTGGGTTGTTGTTGTAAGAATGATTTGGGTGCTGCCCACAAGCATTGTGCTGAGGCTTGGTTCAAAATCAGAGGAAACAAGACATGTGAGATATGTCATTCTATTGTAAGAAATGTAATGGTAGCACATGAATTTGAACAAACGGAGCAAGTCCATGGGTCGAACAATGGGACGGTATCAACGGCCACGGTTGCAGCGTCGGTGGCTGCCGCTCCTAGTGGTGGCCGGAGCTTTTGGCATGTTCACAGAGTCCTTAATTTTCTTCTTGCTTGTATGGTATTTGCTTTTGTCATATCTTGGCTCTTTCATTTCAATGTGCCATCATAA 558 46.95 MNRSLINSHLDVGFLSAWKALETAGADLEKEWQRAAAVATAERGSGVGEVKVKLERECRICHLGLESNSSEFGVGIELGCCCKNDLGAAHKHCAEAWFKIRGNKTCEICHSIVRNVMVAHEFEQTEQVHGSNNGTVSTATVAASVAAAPSGGRSFWHVHRVLNFLLACMVFAFVISWLFHFNVPS 185
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 28513308 28516947 + CePI673135_04g008770.1 Cec04g0877 200359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g0877 185 SUPERFAMILY RING/U-box 55 113 - -
Cec04g0877 185 PANTHER ZINC FINGER, RING-CH-TYPE 36 184 - -
Cec04g0877 185 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 44 119 IPR013083 -
Cec04g0877 185 ProSiteProfiles Zinc finger RING-CH-type profile. 50 116 IPR011016 GO:0008270(InterPro)
Cec04g0877 185 SMART ringv_2 57 110 IPR011016 GO:0008270(InterPro)
Cec04g0877 185 Pfam RING-variant domain 58 109 IPR011016 GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g0877 Cec-Chr4:28513308 Cec04g2090 Cec-Chr4:38871210 3.50E-16 dispersed
Cec10g2171 Cec-Chr10:36177429 Cec04g0877 Cec-Chr4:28513308 1.90E-41 wgd
Cec11g0670 Cec-Chr11:7427420 Cec04g0877 Cec-Chr4:28513308 8.00E-30 wgd
Cec03g0099 Cec-Chr3:1048323 Cec04g0877 Cec-Chr4:28513308 2.60E-28 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g0877 - - - 0.0